View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7894_low_10 (Length: 528)
Name: NF7894_low_10
Description: NF7894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7894_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 489; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 18 - 510
Target Start/End: Original strand, 30467463 - 30467955
Alignment:
| Q |
18 |
ataagtgataaagtgatcggcagtttttccacactgccaaaaccatgagatggagagaagatagtttacatagtggaagaatttagcattttcttaatca |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30467463 |
ataagtgataaagtgatcggcagtttttccacactgccaaaaccatgagatggagagaagatagtttacatagtggaagaatttagcattttcttaatca |
30467562 |
T |
|
| Q |
118 |
agcagagtaaccaagatcacatattattaaaaatccaattgttcttagtgttgtctaatctcatcatcaaccctcttttactttaacaactttgattata |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30467563 |
agcagagtaaccaagatcacatattattaaaaatccaattgttcttagtgttgtctaatctcatcatcaaccctcttttactttaacaactttgattata |
30467662 |
T |
|
| Q |
218 |
agttatgccctaataggaaatcactaggatggccaagaaacgttggacttacttctttgagaaaatattcgagtgcttacacctttatcatctttccgtt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
30467663 |
agttatgccctaataggaaatcactaggatggccaagaaacgttggacttacttctttgagaaaatattcgagtgcttacacctttattatctttccgtt |
30467762 |
T |
|
| Q |
318 |
gatcaatatttaaacgacacatccatgtgcaattaatcgcttattatatcaccatgttgaaacacaagaatatcgtctcacgtgggaccttatagaatct |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30467763 |
gatcaatatttaaacgacacatccatgtgcaattaatcgcttattatatcaccatgttgaaacacaagaatatcgtctcacgtgggaccttatagaatct |
30467862 |
T |
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| Q |
418 |
catgttaaataccattaccattctcaattaacaacctcatcaaaaccatcatcatcacttaactagttttaattaattctctcttgccctata |
510 |
Q |
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| T |
30467863 |
catgttaaataccattaccattctcaattaacaacctcatcaaaaccatcatcatcacttaactagttttaattaattctctcttgccctata |
30467955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 33 - 181
Target Start/End: Original strand, 16648204 - 16648352
Alignment:
| Q |
33 |
atcggcagtttttccacactgccaaaaccatgagatggagagaagatagtttacatagtggaagaatttagcattttcttaatcaagcagagtaaccaag |
132 |
Q |
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|||| |||||||||||||| ||||||| |||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
16648204 |
atcgccagtttttccacacagccaaaaacatgagatggagagaagacagtttacgtagtggaagaatttagcattatcttaatcaagcagagtaaccaag |
16648303 |
T |
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| Q |
133 |
atcacatattattaaaaatccaattgttcttagtgttgtctaatctcat |
181 |
Q |
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| T |
16648304 |
attacatataattaaaaatccaattactcttagtgttttctaatctcat |
16648352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 19 - 112
Target Start/End: Original strand, 45863514 - 45863610
Alignment:
| Q |
19 |
taagtgataaagtgatcggcagtttttccacactgccaaaaccatgagatg---gagagaagatagtttacatagtggaagaatttagcattttctt |
112 |
Q |
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|||||| ||||||||||||||||||||| |||| ||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||| |
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| T |
45863514 |
taagtggtaaagtgatcggcagtttttcgacacagccaaaaacatgagatgcaggagagaagatagtttacatagtagaagaatttagcattttctt |
45863610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 232 - 303
Target Start/End: Original strand, 45863863 - 45863935
Alignment:
| Q |
232 |
aggaaatcactaggatggccaagaaacgttggactt-acttctttgagaaaatattcgagtgcttacaccttt |
303 |
Q |
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|||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
45863863 |
aggaaatcactaggataaccaagagacgttggactttacttctttgagaaaatattcgagtgcttacaccttt |
45863935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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