View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7894_low_11 (Length: 512)

Name: NF7894_low_11
Description: NF7894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7894_low_11
NF7894_low_11
[»] chr1 (19 HSPs)
chr1 (17-496)||(42788987-42789438)
chr1 (344-436)||(33910290-33910382)
chr1 (346-409)||(24910594-24910657)
chr1 (344-409)||(51251971-51252036)
chr1 (346-436)||(45692270-45692360)
chr1 (380-429)||(35375715-35375764)
chr1 (301-429)||(39256156-39256296)
chr1 (345-427)||(16529014-16529096)
chr1 (227-284)||(20493943-20494000)
chr1 (227-282)||(5155169-5155224)
chr1 (227-282)||(8211472-8211527)
chr1 (361-436)||(13243208-13243283)
chr1 (376-429)||(11072853-11072906)
chr1 (227-284)||(29707945-29708002)
chr1 (301-350)||(33910388-33910437)
chr1 (369-429)||(9961731-9961791)
chr1 (301-349)||(24910666-24910714)
chr1 (346-382)||(29390158-29390194)
chr1 (346-382)||(33474920-33474956)
[»] chr2 (21 HSPs)
chr2 (227-350)||(42785142-42785265)
chr2 (36-146)||(42785322-42785432)
chr2 (344-429)||(18360277-18360362)
chr2 (346-436)||(11376360-11376450)
chr2 (346-429)||(9811795-9811878)
chr2 (22-93)||(18357157-18357228)
chr2 (346-429)||(36412882-36412965)
chr2 (351-429)||(44979296-44979374)
chr2 (344-429)||(25297777-25297862)
chr2 (346-429)||(16579045-16579128)
chr2 (346-429)||(19936646-19936729)
chr2 (227-284)||(9811572-9811629)
chr2 (227-284)||(16578827-16578884)
chr2 (227-284)||(36413474-36413531)
chr2 (346-409)||(20420833-20420896)
chr2 (177-212)||(42785283-42785318)
chr2 (346-408)||(34910788-34910850)
chr2 (344-382)||(44035786-44035824)
chr2 (310-350)||(20420785-20420825)
chr2 (301-349)||(25297869-25297917)
chr2 (310-350)||(36412973-36413013)
[»] chr5 (32 HSPs)
chr5 (36-146)||(35359216-35359327)
chr5 (177-409)||(35359331-35359559)
chr5 (28-93)||(17084997-17085062)
chr5 (344-429)||(32520746-32520831)
chr5 (344-436)||(12680589-12680681)
chr5 (358-429)||(12165464-12165535)
chr5 (366-429)||(36176641-36176704)
chr5 (351-429)||(10174538-10174616)
chr5 (346-396)||(9161459-9161509)
chr5 (224-284)||(30002189-30002249)
chr5 (350-409)||(2226424-2226483)
chr5 (346-429)||(23781183-23781266)
chr5 (346-429)||(23868136-23868219)
chr5 (346-437)||(35893493-35893584)
chr5 (366-429)||(36176410-36176473)
chr5 (227-284)||(667458-667515)
chr5 (227-284)||(8409180-8409237)
chr5 (227-284)||(15068652-15068709)
chr5 (346-422)||(27885675-27885751)
chr5 (344-396)||(36103165-36103217)
chr5 (346-409)||(666873-666936)
chr5 (346-429)||(8409391-8409474)
chr5 (346-429)||(11917860-11917943)
chr5 (346-409)||(15068881-15068944)
chr5 (346-409)||(38334356-38334419)
chr5 (344-387)||(38434162-38434205)
chr5 (346-429)||(42545860-42545943)
chr5 (390-436)||(36568268-36568314)
chr5 (227-284)||(701411-701468)
chr5 (227-264)||(11917597-11917634)
chr5 (227-284)||(27886260-27886317)
chr5 (343-392)||(30265356-30265405)
[»] chr4 (25 HSPs)
chr4 (36-147)||(5261663-5261774)
chr4 (36-146)||(51394993-51395103)
chr4 (272-429)||(5261376-5261545)
chr4 (272-350)||(51395223-51395301)
chr4 (344-429)||(10219150-10219235)
chr4 (346-429)||(42558138-42558221)
chr4 (344-429)||(26477714-26477799)
chr4 (344-429)||(48996556-48996641)
chr4 (346-429)||(29643292-29643375)
chr4 (346-429)||(30193501-30193584)
chr4 (346-429)||(50570543-50570626)
chr4 (228-283)||(51395162-51395217)
chr4 (346-422)||(36078739-36078815)
chr4 (346-429)||(29640050-29640133)
chr4 (344-429)||(32137169-32137257)
chr4 (380-429)||(4643005-4643054)
chr4 (227-264)||(5261570-5261607)
chr4 (227-284)||(29636965-29637022)
chr4 (301-415)||(40899619-40899745)
chr4 (227-284)||(50570792-50570849)
chr4 (358-429)||(8176133-8176204)
chr4 (237-284)||(42557925-42557972)
chr4 (227-284)||(36077754-36077811)
chr4 (301-350)||(52345129-52345178)
chr4 (369-429)||(46471956-46472016)
[»] chr7 (33 HSPs)
chr7 (40-145)||(1335585-1335690)
chr7 (346-429)||(42910202-42910285)
chr7 (344-429)||(36509109-36509194)
chr7 (344-429)||(36921077-36921162)
chr7 (28-93)||(7760402-7760467)
chr7 (272-436)||(1335813-1335969)
chr7 (358-429)||(10070044-10070115)
chr7 (346-429)||(10672234-10672317)
chr7 (344-409)||(31876187-31876252)
chr7 (349-429)||(47903701-47903781)
chr7 (346-429)||(5933097-5933180)
chr7 (346-429)||(8768251-8768334)
chr7 (346-429)||(11205963-11206046)
chr7 (301-429)||(24360816-24360954)
chr7 (366-429)||(43429667-43429730)
chr7 (346-429)||(47070083-47070166)
chr7 (354-436)||(22366927-22367009)
chr7 (346-423)||(12118015-12118092)
chr7 (30-93)||(10069471-10069534)
chr7 (346-409)||(13852785-13852848)
chr7 (227-284)||(3213056-3213113)
chr7 (227-284)||(8768851-8768908)
chr7 (227-284)||(11206202-11206259)
chr7 (227-284)||(47069860-47069917)
chr7 (227-284)||(47204291-47204348)
chr7 (346-409)||(3211747-3211810)
chr7 (346-408)||(18672762-18672824)
chr7 (344-429)||(27054248-27054334)
chr7 (346-408)||(32824065-32824127)
chr7 (227-284)||(11216419-11216476)
chr7 (227-284)||(12117786-12117843)
chr7 (301-350)||(43429590-43429639)
chr7 (369-429)||(29628754-29628814)
[»] scaffold0013 (1 HSPs)
scaffold0013 (344-427)||(106512-106595)
[»] chr6 (9 HSPs)
chr6 (344-429)||(25137620-25137705)
chr6 (346-436)||(10390554-10390644)
chr6 (346-429)||(35039459-35039542)
chr6 (343-429)||(13801503-13801589)
chr6 (346-429)||(12270961-12271044)
chr6 (227-284)||(12270738-12270795)
chr6 (301-350)||(33550745-33550794)
chr6 (227-284)||(5866940-5866997)
chr6 (301-350)||(10390652-10390701)
[»] chr3 (18 HSPs)
chr3 (344-429)||(48032662-48032747)
chr3 (358-436)||(6003907-6003985)
chr3 (342-429)||(21586373-21586460)
chr3 (31-120)||(9827513-9827601)
chr3 (346-429)||(4669178-4669261)
chr3 (346-429)||(51149253-51149336)
chr3 (346-409)||(10369666-10369729)
chr3 (346-429)||(35401755-35401838)
chr3 (227-281)||(9817756-9817810)
chr3 (351-429)||(33361373-33361451)
chr3 (227-284)||(35402044-35402101)
chr3 (358-429)||(27641743-27641814)
chr3 (344-382)||(39098395-39098433)
chr3 (227-284)||(4669433-4669490)
chr3 (227-284)||(10369403-10369460)
chr3 (227-284)||(34794775-34794832)
chr3 (310-350)||(33361320-33361360)
chr3 (310-350)||(35401846-35401886)
[»] chr8 (10 HSPs)
chr8 (346-429)||(14549702-14549785)
chr8 (344-437)||(44673201-44673294)
chr8 (351-436)||(6200450-6200535)
chr8 (344-436)||(3682390-3682482)
chr8 (227-284)||(3006407-3006464)
chr8 (344-429)||(18169553-18169637)
chr8 (344-429)||(18633119-18633203)
chr8 (343-429)||(3006158-3006244)
chr8 (227-264)||(5803100-5803137)
chr8 (376-429)||(12659752-12659805)
[»] scaffold0029 (2 HSPs)
scaffold0029 (344-425)||(40099-40180)
scaffold0029 (358-425)||(47295-47362)
[»] scaffold0059 (2 HSPs)
scaffold0059 (344-427)||(69058-69141)
scaffold0059 (344-427)||(77164-77247)
[»] scaffold0308 (2 HSPs)
scaffold0308 (227-284)||(5727-5784)
scaffold0308 (346-409)||(5458-5521)


Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 17 - 496
Target Start/End: Complemental strand, 42789438 - 42788987
Alignment:
Q  17 aatatttgtgttgccttagtatagtcatgtattacatgtgttataaattggcagaacataccaccaaagttatatgggtaactccatcatccaaaaataa 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  42789438 aatatttgtgttgccttagtatagtcatgtattacatgtgttataaattggcagaacatatctccaaagttatatgggtaactccatcatccaaaaataa 42789339  T
Q  117 catttcagtaccaaacaattttagatatctagcataaca-nnnnnnnnngggtcaaatatctagcataacattttagtaccaatcaattttaaatatccn 215  Q
    |||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||||||||||||||||||||||||     
T  42789338 catttcagtaccaaacaattttagatatctagcataacatttttttttttggtcaaatatctagcataacattttagtaccaatcaattttaaatatcca 42789239  T
Q  216 nnnnnnntaatttgaagttcgaaaataacattacaataccaataaaagtggtctatccaaaataacatttaaaaaccaataaaagttattctttcggttt 315  Q
            ||           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  42789238 --------aa-----------aaaataacattacaataccaataaaagtggtctatccaaaataacatttaaaaaccaataaaagttattctttcagttt 42789158  T
Q  316 ggttttgttcggttcgatttctgagatgcaaaccgaaccgcacggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttgaaattt 415  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||| |||||          ||||| |||| || ||||||| |||||    
T  42789157 ggttttgttcggttcggtttctgagatgcaaaccgaaccgtacggttcagtgcaaaaatcatc----------cgaactaaatatgattttttgcaattt 42789068  T
Q  416 cggtttggattggtatgatttaaagnnnnnnnattgggttgattcaattttttattgggtttgcattttatatgagaaagc 496  Q
    ||||||| |||||||||||||||||       ||||||||||||  |||||||||||||||||||| ||||||||||||||    
T  42789067 cggtttgaattggtatgatttaaagtttttttattgggttgatttgattttttattgggtttgcatgttatatgagaaagc 42788987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 344 - 436
Target Start/End: Complemental strand, 33910382 - 33910290
Alignment:
Q  344 caaaccgaaccgcacggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttgaaatttcggtttggattggtatgattt 436  Q
    ||||||||||||| ||||||| |||||||||||||| ||||||| |||||||| || |||||||||  |||||||||||||||||| ||||||    
T  33910382 caaaccgaaccgcgcggttcagtgcaaaagtcatccaaattcatccgaaccaagtgcggttttttgcgatttcggtttggattggtttgattt 33910290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 346 - 409
Target Start/End: Complemental strand, 24910657 - 24910594
Alignment:
Q  346 aaccgaaccgcacggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttg 409  Q
    |||||||| ||||||||||||||||||||||||||||||||| |||||||| || |||||||||    
T  24910657 aaccgaactgcacggttcaatgcaaaagtcatccgaattcatccgaaccaagtgcggttttttg 24910594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 344 - 409
Target Start/End: Complemental strand, 51252036 - 51251971
Alignment:
Q  344 caaaccgaaccgcacggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttg 409  Q
    |||||||||| || ||||||| |||||||||||||||||||||| ||||||||||| |||||||||    
T  51252036 caaaccgaactgcgcggttcattgcaaaagtcatccgaattcatccgaaccaaatgcggttttttg 51251971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 346 - 436
Target Start/End: Original strand, 45692270 - 45692360
Alignment:
Q  346 aaccgaaccgcacggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttgaaatttcggtttggattggtatgattt 436  Q
    ||||||||||  ||||||| |||||||||||||| ||||||| |||||||| ||  ||||||||   ||||| ||||||||||| ||||||    
T  45692270 aaccgaaccgtgcggttcagtgcaaaagtcatccaaattcatccgaaccaagtgcagttttttgccgtttcgatttggattggtttgattt 45692360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 380 - 429
Target Start/End: Original strand, 35375715 - 35375764
Alignment:
Q  380 gaattcattcgaaccaaatgtggttttttgaaatttcggtttggattggt 429  Q
    |||| |||||||||||||||||||||||||  ||||||||||||||||||    
T  35375715 gaatacattcgaaccaaatgtggttttttgcgatttcggtttggattggt 35375764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 301 - 429
Target Start/End: Complemental strand, 39256296 - 39256156
Alignment:
Q  301 ttattctttcggtttggttttgttcggttcgatttctgagatgcaaaccg------------aaccgcacggttcaatgcaaaagtcatccgaattcatt 388  Q
    |||||||| ||||||||||| ||| |||||| || |||||||||||||||            |||||| | ||||| |||||||||||||| |||||||     
T  39256296 ttattcttgcggtttggtttggtttggttcggttgctgagatgcaaaccgcaaaccgaaccaaaccgcgcagttcagtgcaaaagtcatccaaattcatc 39256197  T
Q  389 cgaaccaaatgtggttttttgaaatttcggtttggattggt 429  Q
    |||||||| |  |||||||||   |||||||||||||||||    
T  39256196 cgaaccaagtacggttttttgtggtttcggtttggattggt 39256156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 345 - 427
Target Start/End: Complemental strand, 16529096 - 16529014
Alignment:
Q  345 aaaccgaaccgcacggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttgaaatttcggtttggattg 427  Q
    ||||||||| || | ||||| |||||||| ||||||||||||| |||||||| ||  |||||||| | ||||| |||||||||    
T  16529096 aaaccgaactgcgctgttcagtgcaaaagccatccgaattcatacgaaccaagtgcagttttttgcagtttcgatttggattg 16529014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 227 - 284
Target Start/End: Original strand, 20493943 - 20494000
Alignment:
Q  227 ttgaagttcgaaaataacattacaataccaataaaagtggtctatccaaaataacatt 284  Q
    ||||||||| |||||| |||||||||||||||||||||  | |||| |||||||||||    
T  20493943 ttgaagttccaaaatagcattacaataccaataaaagttatttatctaaaataacatt 20494000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 282
Target Start/End: Complemental strand, 5155224 - 5155169
Alignment:
Q  227 ttgaagttcgaaaataacattacaataccaataaaagtggtctatccaaaataaca 282  Q
    ||||||||| |||||| |||||||||||||||||||||  | |||| |||||||||    
T  5155224 ttgaagttccaaaatagcattacaataccaataaaagttatttatctaaaataaca 5155169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 282
Target Start/End: Original strand, 8211472 - 8211527
Alignment:
Q  227 ttgaagttcgaaaataacattacaataccaataaaagtggtctatccaaaataaca 282  Q
    ||||||||| |||||| |||||||||||||||||||||  | |||| |||||||||    
T  8211472 ttgaagttccaaaatagcattacaataccaataaaagttatttatctaaaataaca 8211527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 361 - 436
Target Start/End: Original strand, 13243208 - 13243283
Alignment:
Q  361 ttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttgaaatttcggtttggattggtatgattt 436  Q
    |||| |||||||||| || |||||||| ||||||||||| | |||||||   ||| ||||||||||||| ||||||    
T  13243208 ttcagtgcaaaagtcgtctgaattcatccgaaccaaatgcgattttttgcggttttggtttggattggtttgattt 13243283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 429
Target Start/End: Complemental strand, 11072906 - 11072853
Alignment:
Q  376 atccgaattcattcgaaccaaatgtggttttttgaaatttcggtttggattggt 429  Q
    |||||| | ||| ||||||||||| ||||||||| | |||||||||||||||||    
T  11072906 atccgattacatccgaaccaaatgcggttttttgcagtttcggtttggattggt 11072853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 284
Target Start/End: Complemental strand, 29708002 - 29707945
Alignment:
Q  227 ttgaagttcgaaaataacattacaataccaataaaagtggtctatccaaaataacatt 284  Q
    ||||||||| |||||| |||||||||||||||||||||  | |||  |||||||||||    
T  29708002 ttgaagttccaaaatagcattacaataccaataaaagttatttatataaaataacatt 29707945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 350
Target Start/End: Complemental strand, 33910437 - 33910388
Alignment:
Q  301 ttattctttcggtttggttttgttcggttcgatttctgagatgcaaaccg 350  Q
    |||||||| ||||||||||| ||| |||| |||| |||||||||||||||    
T  33910437 ttattcttgcggtttggtttggtttggtttgattactgagatgcaaaccg 33910388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 369 - 429
Target Start/End: Complemental strand, 9961791 - 9961731
Alignment:
Q  369 aaaagtcatccgaattcattcgaaccaaatgtggttttttgaaatttcggtttggattggt 429  Q
    |||||| |||||||| ||| | ||||||||| ||||||||| | |||| ||||||||||||    
T  9961791 aaaagtgatccgaatacatccaaaccaaatgcggttttttgcagtttcagtttggattggt 9961731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 301 - 349
Target Start/End: Complemental strand, 24910714 - 24910666
Alignment:
Q  301 ttattctttcggtttggttttgttcggttcgatttctgagatgcaaacc 349  Q
    |||||||| ||||||||||| ||| |||||| || ||||||||||||||    
T  24910714 ttattcttccggtttggtttggtttggttcggttgctgagatgcaaacc 24910666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 346 - 382
Target Start/End: Original strand, 29390158 - 29390194
Alignment:
Q  346 aaccgaaccgcacggttcaatgcaaaagtcatccgaa 382  Q
    ||||||||||| ||||||| |||||||||||||||||    
T  29390158 aaccgaaccgcgcggttcagtgcaaaagtcatccgaa 29390194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 346 - 382
Target Start/End: Original strand, 33474920 - 33474956
Alignment:
Q  346 aaccgaaccgcacggttcaatgcaaaagtcatccgaa 382  Q
    ||||||||||| ||||||| |||||||||||||||||    
T  33474920 aaccgaaccgcgcggttcagtgcaaaagtcatccgaa 33474956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 2e-44; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 227 - 350
Target Start/End: Complemental strand, 42785265 - 42785142
Alignment:
Q  227 ttgaagttcgaaaataacattacaataccaataaaagtggtctatccaaaataacatttaaaaaccaataaaagttattctttcggtttggttttgttcg 326  Q
    ||||||||| ||||||||||||||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||| |    
T  42785265 ttgaagttccaaaataacattacaataccaataaaagttatctatccaaaataacatttaagaaccaataaaagttattcttacggtttggtttggtttg 42785166  T
Q  327 gttcgatttctgagatgcaaaccg 350  Q
    ||||| ||||||||||||||||||    
T  42785165 gttcggtttctgagatgcaaaccg 42785142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 36 - 146
Target Start/End: Complemental strand, 42785432 - 42785322
Alignment:
Q  36 tatagtcatgtattacatgtgttataaattggcagaacataccaccaaagttatatgggtaactccatcatccaaaaataacatttcagtaccaaacaat 135  Q
    |||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||| |||| ||||||||    
T  42785432 tatagtcatgtattacatgtgtcataaagtggcataacataccaccaaagttatatggttaactccatcatccaaaattaacattttagtatcaaacaat 42785333  T
Q  136 tttagatatct 146  Q
    |||||||||||    
T  42785332 tttagatatct 42785322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 344 - 429
Target Start/End: Original strand, 18360277 - 18360362
Alignment:
Q  344 caaaccgaaccgcacggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttgaaatttcggtttggattggt 429  Q
    |||||||||||||  ||||||||||||||||||| |||||| || |||||||| || ||||||||| |||||||||||||||||||    
T  18360277 caaaccgaaccgcgtggttcaatgcaaaagtcattcgaatttatccgaaccaagtgcggttttttggaatttcggtttggattggt 18360362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 346 - 436
Target Start/End: Original strand, 11376360 - 11376450
Alignment:
Q  346 aaccgaaccgcacggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttgaaatttcggtttggattggtatgattt 436  Q
    ||||||||||| ||||||| ||||||||||||| |||||||| |||||||| || ||||||| |   ||| ||||||||||||| ||||||    
T  11376360 aaccgaaccgcgcggttcagtgcaaaagtcatctgaattcatccgaaccaagtgcggtttttcgcggttttggtttggattggtttgattt 11376450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 346 - 429
Target Start/End: Original strand, 9811795 - 9811878
Alignment:
Q  346 aaccgaaccgcacggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttgaaatttcggtttggattggt 429  Q
    ||||||||||| ||||||| |  |||||||||||||| |||| |||||||| || |||||||||   |||||||||||||||||    
T  9811795 aaccgaaccgcgcggttcagtctaaaagtcatccgaactcatccgaaccaagtgcggttttttgcggtttcggtttggattggt 9811878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 93
Target Start/End: Original strand, 18357157 - 18357228
Alignment:
Q  22 ttgtgttgccttagtatagtcatgtattacatgtgttataaattggcagaacataccaccaaagttatatgg 93  Q
    |||| |||||||| |||||||||||||||| ||||| |||||  | |||||||||||||||||||| |||||    
T  18357157 ttgttttgccttaatatagtcatgtattacctgtgtcataaaccgacagaacataccaccaaagttttatgg 18357228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 346 - 429
Target Start/End: Complemental strand, 36412965 - 36412882
Alignment:
Q  346 aaccgaaccgcacggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttgaaatttcggtttggattggt 429  Q
    ||||||||||||||||||| |  |||||||||||||| |||| |||||||| || |||||||||   ||||||||||| |||||    
T  36412965 aaccgaaccgcacggttcagtctaaaagtcatccgaactcatccgaaccaagtgcggttttttgcggtttcggtttgggttggt 36412882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 351 - 429
Target Start/End: Complemental strand, 44979374 - 44979296
Alignment:
Q  351 aaccgcacggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttgaaatttcggtttggattggt 429  Q
    |||||| ||||||| ||||||| |||||||||||||| |||||||| || |||||||||   ||| |||||||||||||    
T  44979374 aaccgcgcggttcagtgcaaaattcatccgaattcatccgaaccaagtgcggttttttgcggttttggtttggattggt 44979296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 344 - 429
Target Start/End: Complemental strand, 25297862 - 25297777
Alignment:
Q  344 caaaccgaaccgcacggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttgaaatttcggtttggattggt 429  Q
    ||||||||||||  |||||||| ||||||||||||||||||||| |||| ||| || ||||||||    |||| ||||||||||||    
T  25297862 caaaccgaaccgtgcggttcaaagcaaaagtcatccgaattcatccgaatcaagtgcggttttttacggtttcagtttggattggt 25297777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 346 - 429
Target Start/End: Original strand, 16579045 - 16579128
Alignment:
Q  346 aaccgaaccgcacggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttgaaatttcggtttggattggt 429  Q
    ||||||||||| ||||||| |  |||||||||||||| |||| |||||||| || | |||||||   |||||||||||||||||    
T  16579045 aaccgaaccgcgcggttcagtctaaaagtcatccgaactcatccgaaccaagtgcgattttttgcggtttcggtttggattggt 16579128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 346 - 429
Target Start/End: Complemental strand, 19936729 - 19936646
Alignment:
Q  346 aaccgaaccgcacggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttgaaatttcggtttggattggt 429  Q
    ||||||||||| | ||||| || ||||| |||| |||||||| |||||||| || |||||||||   |||||||||||||||||    
T  19936729 aaccgaaccgcgcagttcagtgaaaaagacatctgaattcatccgaaccaagtgcggttttttgcggtttcggtttggattggt 19936646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 227 - 284
Target Start/End: Original strand, 9811572 - 9811629
Alignment:
Q  227 ttgaagttcgaaaataacattacaataccaataaaagtggtctatccaaaataacatt 284  Q
    ||||||||| |||||| |||||||||||||||||||||  | |||| |||||||||||    
T  9811572 ttgaagttccaaaatagcattacaataccaataaaagttatttatctaaaataacatt 9811629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 227 - 284
Target Start/End: Original strand, 16578827 - 16578884
Alignment:
Q  227 ttgaagttcgaaaataacattacaataccaataaaagtggtctatccaaaataacatt 284  Q
    ||||||||| |||||| |||||||||||||||||||||  | |||| |||||||||||    
T  16578827 ttgaagttccaaaatagcattacaataccaataaaagttatttatctaaaataacatt 16578884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 227 - 284
Target Start/End: Complemental strand, 36413531 - 36413474
Alignment:
Q  227 ttgaagttcgaaaataacattacaataccaataaaagtggtctatccaaaataacatt 284  Q
    ||||||||| |||||| |||||||||||||||||||||  | |||| |||||||||||    
T  36413531 ttgaagttccaaaatagcattacaataccaataaaagttatttatctaaaataacatt 36413474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 409
Target Start/End: Original strand, 20420833 - 20420896
Alignment:
Q  346 aaccgaaccgcacggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttg 409  Q
    ||||||||||| ||||||| |  |||||||||||||| |||| |||||||| || |||||||||    
T  20420833 aaccgaaccgcgcggttcagtctaaaagtcatccgaactcatccgaaccaagtgcggttttttg 20420896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 177 - 212
Target Start/End: Complemental strand, 42785318 - 42785283
Alignment:
Q  177 tagcataacattttagtaccaatcaattttaaatat 212  Q
    |||||||||||||||||||||| |||||||||||||    
T  42785318 tagcataacattttagtaccaagcaattttaaatat 42785283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 346 - 408
Target Start/End: Original strand, 34910788 - 34910850
Alignment:
Q  346 aaccgaaccgcacggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggtttttt 408  Q
    ||||||| ||| ||||| | ||||||||||||| |||||||| |||||||| |||| ||||||    
T  34910788 aaccgaaacgcgcggtttattgcaaaagtcatctgaattcatccgaaccaagtgtgatttttt 34910850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 344 - 382
Target Start/End: Original strand, 44035786 - 44035824
Alignment:
Q  344 caaaccgaaccgcacggttcaatgcaaaagtcatccgaa 382  Q
    ||||||||||||| ||||||| |||||||||||||||||    
T  44035786 caaaccgaaccgcgcggttcagtgcaaaagtcatccgaa 44035824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 310 - 350
Target Start/End: Original strand, 20420785 - 20420825
Alignment:
Q  310 cggtttggttttgttcggttcgatttctgagatgcaaaccg 350  Q
    ||||||||||| ||| ||||||||| |||||||||||||||    
T  20420785 cggtttggtttggtttggttcgattgctgagatgcaaaccg 20420825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 301 - 349
Target Start/End: Complemental strand, 25297917 - 25297869
Alignment:
Q  301 ttattctttcggtttggttttgttcggttcgatttctgagatgcaaacc 349  Q
    |||||||| ||||||||||| ||| |||||| || ||||||||||||||    
T  25297917 ttattcttgcggtttggtttggtttggttcggttgctgagatgcaaacc 25297869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 310 - 350
Target Start/End: Complemental strand, 36413013 - 36412973
Alignment:
Q  310 cggtttggttttgttcggttcgatttctgagatgcaaaccg 350  Q
    ||||||||||| ||| ||||||||| |||||||||||||||    
T  36413013 cggtttggtttggtttggttcgattgctgagatgcaaaccg 36412973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 88; Significance: 4e-42; HSPs: 32)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 36 - 146
Target Start/End: Original strand, 35359216 - 35359327
Alignment:
Q  36 tatagtcatgtattacatgtgttataaattggcagaacataccaccaaagttatatgggtaactccatcatccaaaaataacatttcagtaccaaac-aa 134  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||    
T  35359216 tatagtcatgtattacttgtgttataaactggcagaacataccaccaatgttatatgggtaactccatcatccaaaaataacattttagtaccaaacaaa 35359315  T
Q  135 ttttagatatct 146  Q
    ||||||||||||    
T  35359316 ttttagatatct 35359327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 177 - 409
Target Start/End: Original strand, 35359331 - 35359559
Alignment:
Q  177 tagcataacattttagtaccaatcaattttaaatatccnnnnnnnntaatttgaagttcgaaaataacattacaataccaataaaagtggtctatccaaa 276  Q
    |||||||||||||||||||||| ||||||||||||| |         || ||||||||| |||||||| |||||||||||||||||||  ||||||||||    
T  35359331 tagcataacattttagtaccaagcaattttaaatattcaaaaaaag-aacttgaagttccaaaataacgttacaataccaataaaagttatctatccaaa 35359429  T
Q  277 ataacatttaaaaaccaataaaagttattctttcggtttggttttgttcggttcgatttctgagatgcaaaccgaaccgcacggttcaatgcaaaagtca 376  Q
    ||||||||||| |||||||||||||||||||| ||||||||||| |||   || ||  |   |   ||||| |||||||||| ||||| ||||||| |||    
T  35359430 ataacatttaagaaccaataaaagttattcttgcggtttggtttggtt---tttgagatgcaaaccgcaaatcgaaccgcactgttcagtgcaaaaatca 35359526  T
Q  377 tccgaattcattcgaaccaaatgtggttttttg 409  Q
    ||||||||||| || ||||| || |||||||||    
T  35359527 tccgaattcatccgcaccaagtgcggttttttg 35359559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 28 - 93
Target Start/End: Complemental strand, 17085062 - 17084997
Alignment:
Q  28 tgccttagtatagtcatgtattacatgtgttataaattggcagaacataccaccaaagttatatgg 93  Q
    ||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  17085062 tgccttaatatagtcatgtattacatgtgtcataaactggcagaacataccaccaaagttatatgg 17084997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 344 - 429
Target Start/End: Complemental strand, 32520831 - 32520746
Alignment:
Q  344 caaaccgaaccgcacggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttgaaatttcggtttggattggt 429  Q
    ||||||||||||| ||||||| |||||||||||||||||||||| |||||||| || |||||||||   |||||||||||||||||    
T  32520831 caaaccgaaccgcgcggttcattgcaaaagtcatccgaattcatccgaaccaagtgcggttttttgcggtttcggtttggattggt 32520746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 344 - 436
Target Start/End: Complemental strand, 12680681 - 12680589
Alignment:
Q  344 caaaccgaaccgcacggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttgaaatttcggtttggattggtatgattt 436  Q
    |||||| |||||| ||||||| ||||||||||||||||||||||  ||||||| || |||||||||   |||| |||||||||||| ||||||    
T  12680681 caaaccaaaccgcgcggttcattgcaaaagtcatccgaattcatctgaaccaagtgcggttttttgcggtttcagtttggattggtttgattt 12680589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 358 - 429
Target Start/End: Complemental strand, 12165535 - 12165464
Alignment:
Q  358 cggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttgaaatttcggtttggattggt 429  Q
    ||||||| |||||||||||||||||||||| |||||||| || |||||||||   |||||||||||||||||    
T  12165535 cggttcagtgcaaaagtcatccgaattcatccgaaccaagtgcggttttttgcggtttcggtttggattggt 12165464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 366 - 429
Target Start/End: Complemental strand, 36176704 - 36176641
Alignment:
Q  366 tgcaaaagtcatccgaattcattcgaaccaaatgtggttttttgaaatttcggtttggattggt 429  Q
    ||||||||||||||||||||||||||||||| || |||||||||   |||||||||||||||||    
T  36176704 tgcaaaagtcatccgaattcattcgaaccaagtgcggttttttgcggtttcggtttggattggt 36176641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 351 - 429
Target Start/End: Original strand, 10174538 - 10174616
Alignment:
Q  351 aaccgcacggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttgaaatttcggtttggattggt 429  Q
    |||||| ||||||| |||||||||||||||||||||| |||| ||| || |||||||||   |||||||||||||||||    
T  10174538 aaccgcgcggttcagtgcaaaagtcatccgaattcatccgaatcaagtgcggttttttgtggtttcggtttggattggt 10174616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 346 - 396
Target Start/End: Original strand, 9161459 - 9161509
Alignment:
Q  346 aaccgaaccgcacggttcaatgcaaaagtcatccgaattcattcgaaccaa 396  Q
    ||||||||||||||||||| ||||||||||||| |||||||| ||||||||    
T  9161459 aaccgaaccgcacggttcagtgcaaaagtcatctgaattcatccgaaccaa 9161509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 30002189 - 30002249
Alignment:
Q  224 aatttgaagttcgaaaataacattacaataccaataaaagtggtctatccaaaataacatt 284  Q
    |||||||||||| |||||| |||||||||||||||||||||  | |||| |||||||||||    
T  30002189 aatttgaagttccaaaatagcattacaataccaataaaagttatttatctaaaataacatt 30002249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 350 - 409
Target Start/End: Complemental strand, 2226483 - 2226424
Alignment:
Q  350 gaaccgcacggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttg 409  Q
    ||||||| ||||| | |||||||||||||||||||||| |||||||| || |||||||||    
T  2226483 gaaccgcgcggttaagtgcaaaagtcatccgaattcatccgaaccaagtgcggttttttg 2226424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 346 - 429
Target Start/End: Original strand, 23781183 - 23781266
Alignment:
Q  346 aaccgaaccgcacggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttgaaatttcggtttggattggt 429  Q
    ||||||||||| | ||||| ||||||||||||| ||| |||| ||| |||| || |||||||||   |||||||||||||||||    
T  23781183 aaccgaaccgcgcagttcagtgcaaaagtcatctgaaatcatccgatccaagtgcggttttttgcggtttcggtttggattggt 23781266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 346 - 429
Target Start/End: Original strand, 23868136 - 23868219
Alignment:
Q  346 aaccgaaccgcacggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttgaaatttcggtttggattggt 429  Q
    ||||||||||| | ||||| ||||||||||||| ||| |||| ||| |||| || |||||||||   |||||||||||||||||    
T  23868136 aaccgaaccgcgcagttcagtgcaaaagtcatctgaaatcatccgatccaagtgcggttttttgcggtttcggtttggattggt 23868219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 346 - 437
Target Start/End: Original strand, 35893493 - 35893584
Alignment:
Q  346 aaccgaaccgcacggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttgaaatttcggtttggattggtatgattta 437  Q
    ||||| ||||| || |||| | |||||||||||||||||||| |||||||| || |||||||||   ||||| |||| |||||| |||||||    
T  35893493 aaccggaccgcgcgattcagtacaaaagtcatccgaattcatccgaaccaagtgcggttttttgcggtttcgatttgaattggtttgattta 35893584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 366 - 429
Target Start/End: Complemental strand, 36176473 - 36176410
Alignment:
Q  366 tgcaaaagtcatccgaattcattcgaaccaaatgtggttttttgaaatttcggtttggattggt 429  Q
    ||||||||||||||||||||||||||||||| || | |||||||   ||||| |||||||||||    
T  36176473 tgcaaaagtcatccgaattcattcgaaccaagtgcgattttttgcggtttcgatttggattggt 36176410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 227 - 284
Target Start/End: Complemental strand, 667515 - 667458
Alignment:
Q  227 ttgaagttcgaaaataacattacaataccaataaaagtggtctatccaaaataacatt 284  Q
    ||||||||| |||||| |||||||||||||||||||||  | |||| |||||||||||    
T  667515 ttgaagttccaaaatagcattacaataccaataaaagttatttatctaaaataacatt 667458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 227 - 284
Target Start/End: Original strand, 8409180 - 8409237
Alignment:
Q  227 ttgaagttcgaaaataacattacaataccaataaaagtggtctatccaaaataacatt 284  Q
    ||||||||| |||||| |||||||||||||||||||||  | |||| |||||||||||    
T  8409180 ttgaagttccaaaatagcattacaataccaataaaagttatttatctaaaataacatt 8409237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 227 - 284
Target Start/End: Original strand, 15068652 - 15068709
Alignment:
Q  227 ttgaagttcgaaaataacattacaataccaataaaagtggtctatccaaaataacatt 284  Q
    ||||||||| |||||| |||||||||||||||||||||  | |||| |||||||||||    
T  15068652 ttgaagttccaaaatagcattacaataccaataaaagttatttatctaaaataacatt 15068709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 346 - 422
Target Start/End: Complemental strand, 27885751 - 27885675
Alignment:
Q  346 aaccgaaccgcacggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttgaaatttcggtttg 422  Q
    ||||||||||| ||||||| |  |||||||||||||| |||| |||||||| || |||||||||   ||||||||||    
T  27885751 aaccgaaccgcgcggttcagtctaaaagtcatccgaactcatccgaaccaagtgcggttttttgcggtttcggtttg 27885675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 344 - 396
Target Start/End: Complemental strand, 36103217 - 36103165
Alignment:
Q  344 caaaccgaaccgcacggttcaatgcaaaagtcatccgaattcattcgaaccaa 396  Q
    |||| |||||||| ||||||| ||||||||||||| |||||||| ||||||||    
T  36103217 caaaacgaaccgcgcggttcagtgcaaaagtcatctgaattcatccgaaccaa 36103165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 409
Target Start/End: Complemental strand, 666936 - 666873
Alignment:
Q  346 aaccgaaccgcacggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttg 409  Q
    ||||||||||| ||||||| |  |||||||||||||| |||| |||||||| || |||||||||    
T  666936 aaccgaaccgcgcggttcagtctaaaagtcatccgaactcatccgaaccaagtgcggttttttg 666873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 429
Target Start/End: Original strand, 8409391 - 8409474
Alignment:
Q  346 aaccgaaccgcacggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttgaaatttcggtttggattggt 429  Q
    ||||||||||| || |||| |  |||||||||||||| |||| |||||||| || |||||||||   ||||||||||| |||||    
T  8409391 aaccgaaccgcgcgattcagtctaaaagtcatccgaactcatccgaaccaagtgcggttttttgcggtttcggtttgggttggt 8409474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 429
Target Start/End: Original strand, 11917860 - 11917943
Alignment:
Q  346 aaccgaaccgcacggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttgaaatttcggtttggattggt 429  Q
    ||||||||||| ||||| | |  |||||||||||||| |||| | |||||| || |||||||||   |||||||||||||||||    
T  11917860 aaccgaaccgcgcggtttagtctaaaagtcatccgaactcatccaaaccaagtgcggttttttgcggtttcggtttggattggt 11917943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 409
Target Start/End: Original strand, 15068881 - 15068944
Alignment:
Q  346 aaccgaaccgcacggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttg 409  Q
    ||||||||||| ||||||| |  |||||||||||||| |||| |||||||| || |||||||||    
T  15068881 aaccgaaccgcgcggttcagtctaaaagtcatccgaactcatccgaaccaagtgcggttttttg 15068944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 409
Target Start/End: Complemental strand, 38334419 - 38334356
Alignment:
Q  346 aaccgaaccgcacggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttg 409  Q
    ||||||||||| ||||||| |  |||||||||||||| |||| |||||||| || |||||||||    
T  38334419 aaccgaaccgcgcggttcagtctaaaagtcatccgaactcatccgaaccaagtgcggttttttg 38334356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 344 - 387
Target Start/End: Original strand, 38434162 - 38434205
Alignment:
Q  344 caaaccgaaccgcacggttcaatgcaaaagtcatccgaattcat 387  Q
    ||||||||||| ||||||||| |||||||||||||| |||||||    
T  38434162 caaaccgaacctcacggttcagtgcaaaagtcatccaaattcat 38434205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 429
Target Start/End: Original strand, 42545860 - 42545943
Alignment:
Q  346 aaccgaaccgcacggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttgaaatttcggtttggattggt 429  Q
    ||||||||||| ||||| | ||||||||||||| |||||||| |||||||| ||   |||||||   ||||| |||||||||||    
T  42545860 aaccgaaccgcgcggtttagtgcaaaagtcatctgaattcatccgaaccaagtgcaattttttgcggtttcgatttggattggt 42545943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 390 - 436
Target Start/End: Original strand, 36568268 - 36568314
Alignment:
Q  390 gaaccaaatgtggttttttgaaatttcggtttggattggtatgattt 436  Q
    |||||||||| ||||||||| | ||||||||||||||||| ||||||    
T  36568268 gaaccaaatgcggttttttgcagtttcggtttggattggtttgattt 36568314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 284
Target Start/End: Original strand, 701411 - 701468
Alignment:
Q  227 ttgaagttcgaaaataacattacaataccaataaaagtggtctatccaaaataacatt 284  Q
    ||||||||| |||||| |||| ||||||||||||||||  | |||| |||||||||||    
T  701411 ttgaagttccaaaatagcattgcaataccaataaaagttatttatctaaaataacatt 701468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 264
Target Start/End: Original strand, 11917597 - 11917634
Alignment:
Q  227 ttgaagttcgaaaataacattacaataccaataaaagt 264  Q
    ||||||||| |||||| |||||||||||||||||||||    
T  11917597 ttgaagttccaaaatagcattacaataccaataaaagt 11917634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 284
Target Start/End: Complemental strand, 27886317 - 27886260
Alignment:
Q  227 ttgaagttcgaaaataacattacaataccaataaaagtggtctatccaaaataacatt 284  Q
    ||||||||| |||||| ||||||||||||||||||| |  | |||| |||||||||||    
T  27886317 ttgaagttccaaaatagcattacaataccaataaaaattatttatctaaaataacatt 27886260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 392
Target Start/End: Complemental strand, 30265405 - 30265356
Alignment:
Q  343 gcaaaccgaaccgcacggttcaatgcaaaagtcatccgaattcattcgaa 392  Q
    ||||||||||||| |||||| | ||||||||||||| |||||||| ||||    
T  30265405 gcaaaccgaaccgtacggtttagtgcaaaagtcatctgaattcatccgaa 30265356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 3e-37; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 36 - 147
Target Start/End: Complemental strand, 5261774 - 5261663
Alignment:
Q  36 tatagtcatgtattacatgtgttataaattggcagaacataccaccaaagttatatgggtaactccatcatccaaaaataacatttcagtaccaaacaat 135  Q
    |||||||||||||||| ||||| ||||| |||||||| ||||| ||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||    
T  5261774 tatagtcatgtattacctgtgtcataaactggcagaatatacctccaaagttatatgagtagctccatcatccaaaaataacatttcaataccaaacaat 5261675  T
Q  136 tttagatatcta 147  Q
    ||||||||||||    
T  5261674 tttagatatcta 5261663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 36 - 146
Target Start/End: Original strand, 51394993 - 51395103
Alignment:
Q  36 tatagtcatgtattacatgtgttataaattggcagaacataccaccaaagttatatgggtaactccatcatccaaaaataacatttcagtaccaaacaat 135  Q
    ||||||||| |||||||||||| ||||| | ||| || ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||    
T  51394993 tatagtcatatattacatgtgtcataaactagcataaaataccaccaaagttatatgggcaactccatcatccaaaaataacatttcaataccaaacaat 51395092  T
Q  136 tttagatatct 146  Q
    |||||||||||    
T  51395093 tttagatatct 51395103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 272 - 429
Target Start/End: Complemental strand, 5261545 - 5261376
Alignment:
Q  272 ccaaaataacatttaaaaaccaataaaagttattctttcggtttggttttgttcggttcgatttctgagatgcaa------------accgaaccgcacg 359  Q
    |||||||||||||||| ||||| ||||| |||||||| | |||||||||  || |||||||||||||||||||||            |||||||||| ||    
T  5261545 ccaaaataacatttaagaaccagtaaaaattattcttgcagtttggtttgatttggttcgatttctgagatgcaaaccgcaaaccgaaccgaaccgcgcg 5261446  T
Q  360 gttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttgaaatttcggtttggattggt 429  Q
    ||||| ||||||||||||| |||||||| |||| ||| || | |||||||   |||||||||||||||||    
T  5261445 gttcagtgcaaaagtcatctgaattcatccgaatcaagtgcgattttttgcggtttcggtttggattggt 5261376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 272 - 350
Target Start/End: Original strand, 51395223 - 51395301
Alignment:
Q  272 ccaaaataacatttaaaaaccaataaaagttattctttcggtttggttttgttcggttcgatttctgagatgcaaaccg 350  Q
    |||||||||||||||| |||||||||||| ||||||| ||||||||||| ||| ||||||| |||| ||||| ||||||    
T  51395223 ccaaaataacatttaagaaccaataaaagatattcttgcggtttggtttggtttggttcgacttctcagatgtaaaccg 51395301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 344 - 429
Target Start/End: Original strand, 10219150 - 10219235
Alignment:
Q  344 caaaccgaaccgcacggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttgaaatttcggtttggattggt 429  Q
    ||||||||||||| ||||||| || ||||||||||||| |||||||||||||| ||  ||||||||   |||||||||||||||||    
T  10219150 caaaccgaaccgcgcggttcagtgtaaaagtcatccgagttcattcgaaccaagtgcagttttttgcggtttcggtttggattggt 10219235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 346 - 429
Target Start/End: Original strand, 42558138 - 42558221
Alignment:
Q  346 aaccgaaccgcacggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttgaaatttcggtttggattggt 429  Q
    ||||||||||||||||||| |  |||||||||||||| |||| |||||||| || |||||||||   |||||||||||||||||    
T  42558138 aaccgaaccgcacggttcagtctaaaagtcatccgaactcatccgaaccaagtgcggttttttgcggtttcggtttggattggt 42558221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 344 - 429
Target Start/End: Complemental strand, 26477799 - 26477714
Alignment:
Q  344 caaaccgaaccgcacggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttgaaatttcggtttggattggt 429  Q
    ||||||||||||||||||| | | |||||||||||||||||||| |||||||| || ||||||||    |||| ||||||||||||    
T  26477799 caaaccgaaccgcacggtttagtacaaaagtcatccgaattcatccgaaccaagtgcggttttttacggtttcagtttggattggt 26477714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 344 - 429
Target Start/End: Original strand, 48996556 - 48996641
Alignment:
Q  344 caaaccgaaccgcacggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttgaaatttcggtttggattggt 429  Q
    ||||||||||||| ||||||| ||||||||||||||||||| || |||||||| || | |||||||   ||||| |||||||||||    
T  48996556 caaaccgaaccgcgcggttcattgcaaaagtcatccgaattgatccgaaccaagtgcgattttttgcggtttcgatttggattggt 48996641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 346 - 429
Target Start/End: Complemental strand, 29643375 - 29643292
Alignment:
Q  346 aaccgaaccgcacggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttgaaatttcggtttggattggt 429  Q
    ||||||||||| ||||||| |  |||||||||||||| |||| ||||||||||| |||||||||   ||||||||||| |||||    
T  29643375 aaccgaaccgcgcggttcagtttaaaagtcatccgaactcatccgaaccaaatgcggttttttgcggtttcggtttgggttggt 29643292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 346 - 429
Target Start/End: Complemental strand, 30193584 - 30193501
Alignment:
Q  346 aaccgaaccgcacggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttgaaatttcggtttggattggt 429  Q
    ||||||||||||||||||| |||||||||||| ||||||||| |||| ||  || ||||||||    |||||||||||||||||    
T  30193584 aaccgaaccgcacggttcattgcaaaagtcatacgaattcatccgaatcatgtgcggttttttacggtttcggtttggattggt 30193501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 346 - 429
Target Start/End: Complemental strand, 50570626 - 50570543
Alignment:
Q  346 aaccgaaccgcacggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttgaaatttcggtttggattggt 429  Q
    ||||||||||| ||||||| |  |||||||||||||| |||| |||||||| || |||||||||   |||||||||||||||||    
T  50570626 aaccgaaccgcgcggttcagtctaaaagtcatccgaactcatccgaaccaagtgcggttttttgcggtttcggtttggattggt 50570543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 228 - 283
Target Start/End: Original strand, 51395162 - 51395217
Alignment:
Q  228 tgaagttcgaaaataacattacaataccaataaaagtggtctatccaaaataacat 283  Q
    |||||||| ||||||||||||||||||||||||||||  ||| |||||||||||||    
T  51395162 tgaagttccaaaataacattacaataccaataaaagttatctttccaaaataacat 51395217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 346 - 422
Target Start/End: Original strand, 36078739 - 36078815
Alignment:
Q  346 aaccgaaccgcacggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttgaaatttcggtttg 422  Q
    ||||||||||| ||||||| |  |||||||||||||| |||| |||||||| || |||||||||  |||||||||||    
T  36078739 aaccgaaccgcgcggttcagtctaaaagtcatccgaactcatccgaaccaagtgcggttttttgcgatttcggtttg 36078815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 346 - 429
Target Start/End: Original strand, 29640050 - 29640133
Alignment:
Q  346 aaccgaaccgcacggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttgaaatttcggtttggattggt 429  Q
    ||||||||||| ||||||| |  |||||||||||||| |||| |||||||| || |||||||||   ||||||||||| |||||    
T  29640050 aaccgaaccgcgcggttcagtctaaaagtcatccgaactcatccgaaccaagtgcggttttttgcggtttcggtttgggttggt 29640133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 344 - 429
Target Start/End: Original strand, 32137169 - 32137257
Alignment:
Q  344 caaaccgaaccgcacggttcaatgcaaaagtcatccg---aattcattcgaaccaaatgtggttttttgaaatttcggtttggattggt 429  Q
    ||||||||||||||||||||| ||||||||||||| |   ||||||| |||| ||| || | |||||||   |||||||||||||||||    
T  32137169 caaaccgaaccgcacggttcattgcaaaagtcatctgaaaaattcatccgaatcaagtgcgattttttgcggtttcggtttggattggt 32137257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 380 - 429
Target Start/End: Original strand, 4643005 - 4643054
Alignment:
Q  380 gaattcattcgaaccaaatgtggttttttgaaatttcggtttggattggt 429  Q
    |||| ||| |||||||||||||||||||||  ||||||||||||||||||    
T  4643005 gaatacatccgaaccaaatgtggttttttgcgatttcggtttggattggt 4643054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 227 - 264
Target Start/End: Complemental strand, 5261607 - 5261570
Alignment:
Q  227 ttgaagttcgaaaataacattacaataccaataaaagt 264  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  5261607 ttgaagttccaaaataacattacaataccaataaaagt 5261570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 227 - 284
Target Start/End: Original strand, 29636965 - 29637022
Alignment:
Q  227 ttgaagttcgaaaataacattacaataccaataaaagtggtctatccaaaataacatt 284  Q
    ||||||||| |||||| |||||||||||||||||||||  | |||| |||||||||||    
T  29636965 ttgaagttccaaaatagcattacaataccaataaaagttatttatctaaaataacatt 29637022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 301 - 415
Target Start/End: Complemental strand, 40899745 - 40899619
Alignment:
Q  301 ttattctttcggtttggttttgttcggttcgatttctgagatgcaaaccg------------aaccgcacggttcaatgcaaaagtcatccgaattcatt 388  Q
    |||||||| ||||||||||| ||| |||||| || |||||||||||||||            |||||| |||||||  |||||||||||||||||||||     
T  40899745 ttattcttgcggtttggtttggtttggttcggttgctgagatgcaaaccgcaaaccgaaccaaaccgcgcggttcagcgcaaaagtcatccgaattcatc 40899646  T
Q  389 cgaaccaaatgtggttttttgaaattt 415  Q
    |||||||| || | ||||||| |||||    
T  40899645 cgaaccaagtgcgattttttgcaattt 40899619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 227 - 284
Target Start/End: Complemental strand, 50570849 - 50570792
Alignment:
Q  227 ttgaagttcgaaaataacattacaataccaataaaagtggtctatccaaaataacatt 284  Q
    ||||||||| |||||| |||||||||||||||||||||  | |||| |||||||||||    
T  50570849 ttgaagttccaaaatagcattacaataccaataaaagttatttatctaaaataacatt 50570792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 429
Target Start/End: Complemental strand, 8176204 - 8176133
Alignment:
Q  358 cggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttgaaatttcggtttggattggt 429  Q
    ||||||| |||||||||||| ||| ||||| |||||||| || |||||||||   ||||| |||||||||||    
T  8176204 cggttcagtgcaaaagtcattcgagttcatccgaaccaagtgcggttttttgcggtttcgatttggattggt 8176133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 284
Target Start/End: Original strand, 42557925 - 42557972
Alignment:
Q  237 aaaataacattacaataccaataaaagtggtctatccaaaataacatt 284  Q
    ||||||||||||||||||||||||||||  | |||| |||||||||||    
T  42557925 aaaataacattacaataccaataaaagttatttatctaaaataacatt 42557972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 284
Target Start/End: Original strand, 36077754 - 36077811
Alignment:
Q  227 ttgaagttcgaaaataacattacaataccaataaaagtggtctatccaaaataacatt 284  Q
    ||||||||| |||| | |||||||||||||||||||||  | |||| |||||||||||    
T  36077754 ttgaagttccaaaaaagcattacaataccaataaaagttatttatctaaaataacatt 36077811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 350
Target Start/End: Original strand, 52345129 - 52345178
Alignment:
Q  301 ttattctttcggtttggttttgttcggttcgatttctgagatgcaaaccg 350  Q
    |||||||| ||||||||||| ||| |||||| || |||||||||||||||    
T  52345129 ttattcttgcggtttggtttggtttggttcggttgctgagatgcaaaccg 52345178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 369 - 429
Target Start/End: Original strand, 46471956 - 46472016
Alignment:
Q  369 aaaagtcatccgaattcattcgaaccaaatgtggttttttgaaatttcggtttggattggt 429  Q
    |||||| |||||||| ||| ||||||||||| |||||||||   ||||| |||||||||||    
T  46471956 aaaagtgatccgaatacatccgaaccaaatggggttttttgcggtttcgatttggattggt 46472016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 1e-33; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 40 - 145
Target Start/End: Original strand, 1335585 - 1335690
Alignment:
Q  40 gtcatgtattacatgtgttataaattggcagaacataccaccaaagttatatgggtaactccatcatccaaaaataacatttcagtaccaaacaatttta 139  Q
    ||||||||||||  |||| ||||| | |||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||    
T  1335585 gtcatgtattaccagtgtcataaactcgcagaacataccaccaaagttacatggatagctccatcatccaaaaataacatttcagtaccaaacaatttta 1335684  T
Q  140 gatatc 145  Q
    ||||||    
T  1335685 gatatc 1335690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 346 - 429
Target Start/End: Complemental strand, 42910285 - 42910202
Alignment:
Q  346 aaccgaaccgcacggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttgaaatttcggtttggattggt 429  Q
    ||||||||||||||||||| |||||||||||||||||||||| |||||||| || ||||||||| | ||||| |||||||||||    
T  42910285 aaccgaaccgcacggttcagtgcaaaagtcatccgaattcatccgaaccaagtgcggttttttgcagtttcgatttggattggt 42910202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 344 - 429
Target Start/End: Original strand, 36509109 - 36509194
Alignment:
Q  344 caaaccgaaccgcacggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttgaaatttcggtttggattggt 429  Q
    ||||||||||||||||||||||||||||||||||  |||||||| |||||||| || ||||||||| | |||||||||| ||||||    
T  36509109 caaaccgaaccgcacggttcaatgcaaaagtcatatgaattcatccgaaccaagtgcggttttttgcagtttcggtttgaattggt 36509194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 344 - 429
Target Start/End: Complemental strand, 36921162 - 36921077
Alignment:
Q  344 caaaccgaaccgcacggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttgaaatttcggtttggattggt 429  Q
    |||||||||||||  |||||||||||||||| |||||||||||| |||||||| || ||||||||| | |||||||||||||||||    
T  36921162 caaaccgaaccgcgtggttcaatgcaaaagtaatccgaattcatccgaaccaagtgcggttttttgtagtttcggtttggattggt 36921077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 28 - 93
Target Start/End: Original strand, 7760402 - 7760467
Alignment:
Q  28 tgccttagtatagtcatgtattacatgtgttataaattggcagaacataccaccaaagttatatgg 93  Q
    ||||||| |||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||    
T  7760402 tgccttaatatagtcatgtattacatgtatcataaactggcagaacataccaccaaagttatatgg 7760467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 272 - 436
Target Start/End: Original strand, 1335813 - 1335969
Alignment:
Q  272 ccaaaataacatttaaaaaccaataaaagttattctttcggtttggttttgttcggttcgatttctgagatgcaaaccg--aaccgcacggttcaatgca 369  Q
    |||||||||||||||| |||||| ||||||||||||| ||||||||||          |||||| |||||||||||| |  |||||| ||||| | ||||    
T  1335813 ccaaaataacatttaagaaccaaaaaaagttattcttacggtttggtt----------cgatttttgagatgcaaactgcaaaccgcgcggtttagtgca 1335902  T
Q  370 aaagtcatccgaattcattcgaaccaaatgtggttttttgaaatttcggtttggattggtatgattt 436  Q
    ||||||||| |||||||| | |||||| || |||||||||   ||| | ||||||||||| ||||||    
T  1335903 aaagtcatctgaattcatccaaaccaagtgcggttttttgcggttttgatttggattggtttgattt 1335969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 358 - 429
Target Start/End: Original strand, 10070044 - 10070115
Alignment:
Q  358 cggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttgaaatttcggtttggattggt 429  Q
    ||||||| |||||||||||||||||||||| |||||||| || |||||||||   |||||||||||||||||    
T  10070044 cggttcagtgcaaaagtcatccgaattcatccgaaccaagtgcggttttttgcggtttcggtttggattggt 10070115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 346 - 429
Target Start/End: Original strand, 10672234 - 10672317
Alignment:
Q  346 aaccgaaccgcacggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttgaaatttcggtttggattggt 429  Q
    ||||||||||||||||||| |  |||||||||||||| |||| |||||||| || |||||||||   |||||||||||||||||    
T  10672234 aaccgaaccgcacggttcagtctaaaagtcatccgaactcatccgaaccaagtgcggttttttgcggtttcggtttggattggt 10672317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 344 - 409
Target Start/End: Complemental strand, 31876252 - 31876187
Alignment:
Q  344 caaaccgaaccgcacggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttg 409  Q
    |||| |||||||||||||||| |||||||||||||||||||||| |||| ||| ||||| ||||||    
T  31876252 caaatcgaaccgcacggttcattgcaaaagtcatccgaattcatccgaatcaagtgtgggtttttg 31876187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 349 - 429
Target Start/End: Original strand, 47903701 - 47903781
Alignment:
Q  349 cgaaccgcacggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttgaaatttcggtttggattggt 429  Q
    ||||| || ||||||| |||||||||||||||||||||| |||||||| || |||||||||   ||||||||| |||||||    
T  47903701 cgaactgcgcggttcagtgcaaaagtcatccgaattcatccgaaccaagtgcggttttttgcggtttcggtttagattggt 47903781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 346 - 429
Target Start/End: Original strand, 5933097 - 5933180
Alignment:
Q  346 aaccgaaccgcacggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttgaaatttcggtttggattggt 429  Q
    ||||||||||| ||||||| ||||||||||||| ||||| || |||||||| || |||||||||   |||| ||||||||||||    
T  5933097 aaccgaaccgcgcggttcagtgcaaaagtcatctgaatttatccgaaccaagtgcggttttttgcgttttcagtttggattggt 5933180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 346 - 429
Target Start/End: Complemental strand, 8768334 - 8768251
Alignment:
Q  346 aaccgaaccgcacggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttgaaatttcggtttggattggt 429  Q
    ||||||||||| ||||||| |  |||||||||||||| |||| |||||||| || |||||||||   |||||||||||||||||    
T  8768334 aaccgaaccgcgcggttcagtctaaaagtcatccgaactcatccgaaccaagtgcggttttttgcggtttcggtttggattggt 8768251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 346 - 429
Target Start/End: Complemental strand, 11206046 - 11205963
Alignment:
Q  346 aaccgaaccgcacggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttgaaatttcggtttggattggt 429  Q
    ||||||||||| ||||||| |  |||||||||||||| |||| |||||||| || |||||||||   |||||||||||||||||    
T  11206046 aaccgaaccgcgcggttcagtctaaaagtcatccgaactcatccgaaccaagtgcggttttttgcggtttcggtttggattggt 11205963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 301 - 429
Target Start/End: Complemental strand, 24360954 - 24360816
Alignment:
Q  301 ttattctttcggtttggttttgttcggttcgatttctgagatgcaaaccgaaccgcac----------ggttcaatgcaaaagtcatccgaattcattcg 390  Q
    |||||||| ||||||||||| ||| |||||| || |||||| ||||||||||||| ||          |||||  |||||||||||||||||||||| |     
T  24360954 ttattcttgcggtttggtttggtttggttcggttgctgagacgcaaaccgaaccgaaccgaactgtgtggttctgtgcaaaagtcatccgaattcatcca 24360855  T
Q  391 aaccaaatgtggttttttgaaatttcggtttggattggt 429  Q
    |||||| || |||||||||   |||||||||||||||||    
T  24360854 aaccaagtgcggttttttgcggtttcggtttggattggt 24360816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 366 - 429
Target Start/End: Original strand, 43429667 - 43429730
Alignment:
Q  366 tgcaaaagtcatccgaattcattcgaaccaaatgtggttttttgaaatttcggtttggattggt 429  Q
    |||||||||||||||||||||| |||||||| || |||||||||   |||||||||||||||||    
T  43429667 tgcaaaagtcatccgaattcatccgaaccaagtgcggttttttgcggtttcggtttggattggt 43429730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 346 - 429
Target Start/End: Original strand, 47070083 - 47070166
Alignment:
Q  346 aaccgaaccgcacggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttgaaatttcggtttggattggt 429  Q
    ||||||||||| ||||||| |  |||||||||||||| |||| |||||||| || |||||||||   |||||||||||||||||    
T  47070083 aaccgaaccgcgcggttcagtctaaaagtcatccgaactcatccgaaccaagtgcggttttttgcggtttcggtttggattggt 47070166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 354 - 436
Target Start/End: Original strand, 22366927 - 22367009
Alignment:
Q  354 cgcacggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttgaaatttcggtttggattggtatgattt 436  Q
    ||||||||| | ||||||||||||||||||||||  ||||||| || |||||||||   ||||| ||||||||||| ||||||    
T  22366927 cgcacggtttagtgcaaaagtcatccgaattcatctgaaccaagtgcggttttttgcggtttcgatttggattggtttgattt 22367009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 346 - 423
Target Start/End: Original strand, 12118015 - 12118092
Alignment:
Q  346 aaccgaaccgcacggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttgaaatttcggtttgg 423  Q
    ||||||||||| ||||||| |  |||||||||||||| |||| |||||||| |||||||||||  | |||||||||||    
T  12118015 aaccgaaccgcgcggttcagtctaaaagtcatccgaactcatccgaaccaagtgtggttttttacagtttcggtttgg 12118092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 30 - 93
Target Start/End: Original strand, 10069471 - 10069534
Alignment:
Q  30 ccttagtatagtcatgtattacatgtgttataaattggcagaacataccaccaaagttatatgg 93  Q
    ||||| |||| ||||||||||| ||||| ||||| ||| |||||| ||||||||||||||||||    
T  10069471 ccttaatataatcatgtattacctgtgtcataaactggtagaacacaccaccaaagttatatgg 10069534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 346 - 409
Target Start/End: Original strand, 13852785 - 13852848
Alignment:
Q  346 aaccgaaccgcacggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttg 409  Q
    ||||||||| | ||||||| |||||||||||||||||||||| |||||||| ||  ||||||||    
T  13852785 aaccgaaccactcggttcagtgcaaaagtcatccgaattcatccgaaccaagtgctgttttttg 13852848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 227 - 284
Target Start/End: Complemental strand, 3213113 - 3213056
Alignment:
Q  227 ttgaagttcgaaaataacattacaataccaataaaagtggtctatccaaaataacatt 284  Q
    ||||||||| |||||| |||||||||||||||||||||  | |||| |||||||||||    
T  3213113 ttgaagttccaaaatagcattacaataccaataaaagttatttatctaaaataacatt 3213056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 227 - 284
Target Start/End: Complemental strand, 8768908 - 8768851
Alignment:
Q  227 ttgaagttcgaaaataacattacaataccaataaaagtggtctatccaaaataacatt 284  Q
    ||||||||| |||||| |||||||||||||||||||||  | |||| |||||||||||    
T  8768908 ttgaagttccaaaatagcattacaataccaataaaagttatttatctaaaataacatt 8768851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 227 - 284
Target Start/End: Complemental strand, 11206259 - 11206202
Alignment:
Q  227 ttgaagttcgaaaataacattacaataccaataaaagtggtctatccaaaataacatt 284  Q
    ||||||||| |||||| |||||||||||||||||||||  | |||| |||||||||||    
T  11206259 ttgaagttccaaaatagcattacaataccaataaaagttatttatctaaaataacatt 11206202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 227 - 284
Target Start/End: Original strand, 47069860 - 47069917
Alignment:
Q  227 ttgaagttcgaaaataacattacaataccaataaaagtggtctatccaaaataacatt 284  Q
    ||||||||| |||||| |||||||||||||||||||||  | |||| |||||||||||    
T  47069860 ttgaagttccaaaatagcattacaataccaataaaagttatttatctaaaataacatt 47069917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 227 - 284
Target Start/End: Complemental strand, 47204348 - 47204291
Alignment:
Q  227 ttgaagttcgaaaataacattacaataccaataaaagtggtctatccaaaataacatt 284  Q
    ||||||||| |||||| |||||||||||||||||||||  | |||| |||||||||||    
T  47204348 ttgaagttccaaaatagcattacaataccaataaaagttatttatctaaaataacatt 47204291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 409
Target Start/End: Complemental strand, 3211810 - 3211747
Alignment:
Q  346 aaccgaaccgcacggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttg 409  Q
    ||||||||||| ||||||| |  |||||||||||||| |||| |||||||| || |||||||||    
T  3211810 aaccgaaccgcgcggttcagtctaaaagtcatccgaactcatccgaaccaagtgcggttttttg 3211747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 346 - 408
Target Start/End: Complemental strand, 18672824 - 18672762
Alignment:
Q  346 aaccgaaccgcacggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggtttttt 408  Q
    |||||||| || |||| |||||||||| ||||||||||||||  |||| ||||| ||||||||    
T  18672824 aaccgaactgcgcggtccaatgcaaaaatcatccgaattcatctgaactaaatgcggtttttt 18672762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 344 - 429
Target Start/End: Complemental strand, 27054334 - 27054248
Alignment:
Q  344 caaaccgaaccgcacggttcaatgcaaaagtcatccgaattcattcg-aaccaaatgtggttttttgaaatttcggtttggattggt 429  Q
    |||||| || ||||||||| | ||||||||||||| |||||||| || |||||| || ||||||||    |||||||||||||||||    
T  27054334 caaaccaaatcgcacggtttagtgcaaaagtcatctgaattcatccgaaaccaagtgcggttttttacggtttcggtttggattggt 27054248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 346 - 408
Target Start/End: Original strand, 32824065 - 32824127
Alignment:
Q  346 aaccgaaccgcacggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggtttttt 408  Q
    ||||||||||  ||||||| |||||||| ||||||||||||| | |||||| || ||||||||    
T  32824065 aaccgaaccgtgcggttcagtgcaaaagccatccgaattcatccaaaccaagtgcggtttttt 32824127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 284
Target Start/End: Original strand, 11216419 - 11216476
Alignment:
Q  227 ttgaagttcgaaaataacattacaataccaataaaagtggtctatccaaaataacatt 284  Q
    ||||||||| ||||||| |||| | ||||||||||| |||| | ||||||||||||||    
T  11216419 ttgaagttccaaaataaaattatactaccaataaaactggtttttccaaaataacatt 11216476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 284
Target Start/End: Original strand, 12117786 - 12117843
Alignment:
Q  227 ttgaagttcgaaaataacattacaataccaataaaagtggtctatccaaaataacatt 284  Q
    ||||||||| |||||| ||||||||||||||||||| |  | |||| |||||||||||    
T  12117786 ttgaagttccaaaatagcattacaataccaataaaaattatttatctaaaataacatt 12117843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 350
Target Start/End: Original strand, 43429590 - 43429639
Alignment:
Q  301 ttattctttcggtttggttttgttcggttcgatttctgagatgcaaaccg 350  Q
    |||||||| ||||||||||| ||| |||||| || |||||||||||||||    
T  43429590 ttattcttgcggtttggtttggtttggttcggttgctgagatgcaaaccg 43429639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 369 - 429
Target Start/End: Original strand, 29628754 - 29628814
Alignment:
Q  369 aaaagtcatccgaattcattcgaaccaaatgtggttttttgaaatttcggtttggattggt 429  Q
    |||||| |||||||| ||| | ||||||||  ||||||||||| ||||||||||| |||||    
T  29628754 aaaagtgatccgaatacatccaaaccaaatacggttttttgaagtttcggtttgggttggt 29628814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 344 - 427
Target Start/End: Original strand, 106512 - 106595
Alignment:
Q  344 caaaccgaaccgcacggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttgaaatttcggtttggattg 427  Q
    ||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||| |||||||||   ||| |||||||||||    
T  106512 caaaccgaaccgcgcggttcattgcaaaagtcatccgaattcatccgaaccaaatgcggttttttgcggtttaggtttggattg 106595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 344 - 429
Target Start/End: Original strand, 25137620 - 25137705
Alignment:
Q  344 caaaccgaaccgcacggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttgaaatttcggtttggattggt 429  Q
    |||||| |||||| ||||||| |||||||||||||||||||||| |||||||| || |||||||||   |||||||||||||||||    
T  25137620 caaaccaaaccgcgcggttcagtgcaaaagtcatccgaattcatccgaaccaagtggggttttttgcggtttcggtttggattggt 25137705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 346 - 436
Target Start/End: Complemental strand, 10390644 - 10390554
Alignment:
Q  346 aaccgaaccgcacggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttgaaatttcggtttggattggtatgattt 436  Q
    ||||||||||| ||||||| ||||||||||||  |||||||| |||||||| || |||||||||   ||||||||||||||||| ||||||    
T  10390644 aaccgaaccgcgcggttcagtgcaaaagtcatttgaattcatccgaaccaagtgcggttttttgcggtttcggtttggattggtttgattt 10390554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 346 - 429
Target Start/End: Complemental strand, 35039542 - 35039459
Alignment:
Q  346 aaccgaaccgcacggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttgaaatttcggtttggattggt 429  Q
    |||| |||||| |||||||  ||||||||||||||||||||| |||||||| || ||||||||| | ||| |||||||||||||    
T  35039542 aaccaaaccgcgcggttcagcgcaaaagtcatccgaattcatccgaaccaagtgcggttttttgcagttttggtttggattggt 35039459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 343 - 429
Target Start/End: Complemental strand, 13801589 - 13801503
Alignment:
Q  343 gcaaaccgaaccgcacggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttgaaatttcggtttggattggt 429  Q
    ||||||||||||   ||||||||| |||||||||||||||||||| |||||||| || ||||||||    ||||| |||||||||||    
T  13801589 gcaaaccgaaccatgcggttcaatacaaaagtcatccgaattcatccgaaccaagtgcggttttttatggtttcgatttggattggt 13801503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 346 - 429
Target Start/End: Original strand, 12270961 - 12271044
Alignment:
Q  346 aaccgaaccgcacggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttgaaatttcggtttggattggt 429  Q
    ||||||||||| ||||||| |  |||||||||||||| |||| |||||||| || |||||||||   ||||||||||| |||||    
T  12270961 aaccgaaccgcgcggttcagtctaaaagtcatccgaactcatccgaaccaagtgcggttttttgcggtttcggtttgggttggt 12271044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 227 - 284
Target Start/End: Original strand, 12270738 - 12270795
Alignment:
Q  227 ttgaagttcgaaaataacattacaataccaataaaagtggtctatccaaaataacatt 284  Q
    ||||||||| |||||| |||||||||||||||||||||  | |||| |||||||||||    
T  12270738 ttgaagttccaaaatagcattacaataccaataaaagttatttatctaaaataacatt 12270795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 301 - 350
Target Start/End: Original strand, 33550745 - 33550794
Alignment:
Q  301 ttattctttcggtttggttttgttcggttcgatttctgagatgcaaaccg 350  Q
    |||||||| ||||||||||| |||||||||| || |||||||||||||||    
T  33550745 ttattcttgcggtttggtttggttcggttcggttgctgagatgcaaaccg 33550794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 284
Target Start/End: Complemental strand, 5866997 - 5866940
Alignment:
Q  227 ttgaagttcgaaaataacattacaataccaataaaagtggtctatccaaaataacatt 284  Q
    ||||||||| |||||| ||||||||||| |||||||||  | |||| |||||||||||    
T  5866997 ttgaagttccaaaatagcattacaatacaaataaaagttatttatctaaaataacatt 5866940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 350
Target Start/End: Complemental strand, 10390701 - 10390652
Alignment:
Q  301 ttattctttcggtttggttttgttcggttcgatttctgagatgcaaaccg 350  Q
    |||||||| ||||||||||| ||| |||||| || |||||||||||||||    
T  10390701 ttattcttgcggtttggtttggtttggttcggttgctgagatgcaaaccg 10390652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 344 - 429
Target Start/End: Complemental strand, 48032747 - 48032662
Alignment:
Q  344 caaaccgaaccgcacggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttgaaatttcggtttggattggt 429  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||  ||||||| || |||||||||  ||||||| ||||||||||    
T  48032747 caaaccgaaccgcgcggttcattgcaaaagtcatccgaattcatctgaaccaagtgcggttttttgcgatttcgggttggattggt 48032662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 358 - 436
Target Start/End: Complemental strand, 6003985 - 6003907
Alignment:
Q  358 cggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttgaaatttcggtttggattggtatgattt 436  Q
    ||||||| |||||||||||||||||||||| |||||||| ||||||||||||   ||| ||||||||||||| ||||||    
T  6003985 cggttcagtgcaaaagtcatccgaattcatccgaaccaagtgtggttttttgctgttttggtttggattggtttgattt 6003907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 342 - 429
Target Start/End: Complemental strand, 21586460 - 21586373
Alignment:
Q  342 tgcaaaccgaaccgcacggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttgaaatttcggtttggattggt 429  Q
    ||||||||||||||| ||||| | |||||||||||||| ||||||| |||||||| ||  |||||||| | |||| ||||||||||||    
T  21586460 tgcaaaccgaaccgcgcggtttagtgcaaaagtcatccaaattcatccgaaccaagtgcagttttttgcagtttcagtttggattggt 21586373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 31 - 120
Target Start/End: Complemental strand, 9827601 - 9827513
Alignment:
Q  31 cttagtatagtcatgtattacatgtgttataaattggcagaacataccaccaaagttatatgggtaactccatcatccaaaaataacatt 120  Q
    |||| |||||||||||||||  | | | |||||||| |||| ||||||||||||||||| ||||||||||| ||||||| ||||||||||    
T  9827601 cttaatatagtcatgtattatgtatatcataaattg-cagagcataccaccaaagttatgtgggtaactccgtcatccagaaataacatt 9827513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 346 - 429
Target Start/End: Complemental strand, 4669261 - 4669178
Alignment:
Q  346 aaccgaaccgcacggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttgaaatttcggtttggattggt 429  Q
    ||||||||||| ||||||| |  |||||||||||||| |||| |||||||| || ||||||||| | ||||||||||| |||||    
T  4669261 aaccgaaccgcgcggttcagtctaaaagtcatccgaactcatccgaaccaagtgcggttttttgcagtttcggtttgggttggt 4669178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 346 - 429
Target Start/End: Complemental strand, 51149336 - 51149253
Alignment:
Q  346 aaccgaaccgcacggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttgaaatttcggtttggattggt 429  Q
    ||||||||||| ||||||| |  |||||||||||||| |||| |||||||| || |||||||||   |||||||||||||||||    
T  51149336 aaccgaaccgcgcggttcagtctaaaagtcatccgaactcatccgaaccaagtgcggttttttgcggtttcggtttggattggt 51149253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 346 - 409
Target Start/End: Original strand, 10369666 - 10369729
Alignment:
Q  346 aaccgaaccgcacggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttg 409  Q
    ||||||||||| ||||||| |  ||||||||||||||||||| |||||||| || |||||||||    
T  10369666 aaccgaaccgcgcggttcagtctaaaagtcatccgaattcatccgaaccaagtgcggttttttg 10369729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 346 - 429
Target Start/End: Complemental strand, 35401838 - 35401755
Alignment:
Q  346 aaccgaaccgcacggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttgaaatttcggtttggattggt 429  Q
    ||||||||||| ||||||| |  |||||||||||||| |||| |||||||| || |||||||||   ||||||||||| |||||    
T  35401838 aaccgaaccgcgcggttcagtctaaaagtcatccgaactcatccgaaccaagtgcggttttttgcggtttcggtttgggttggt 35401755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 227 - 281
Target Start/End: Complemental strand, 9817810 - 9817756
Alignment:
Q  227 ttgaagttcgaaaataacattacaataccaataaaagtggtctatccaaaataac 281  Q
    ||||||||| ||||||| ||||||||||||||||||||  | |||||||||||||    
T  9817810 ttgaagttccaaaataaaattacaataccaataaaagttatttatccaaaataac 9817756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 351 - 429
Target Start/End: Original strand, 33361373 - 33361451
Alignment:
Q  351 aaccgcacggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttgaaatttcggtttggattggt 429  Q
    |||||| ||||||| |  |||||||||||||| |||| |||||||| || |||||||||   |||||||||||||||||    
T  33361373 aaccgcgcggttcagtctaaaagtcatccgaactcatccgaaccaagtgcggttttttgcggtttcggtttggattggt 33361451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 227 - 284
Target Start/End: Complemental strand, 35402101 - 35402044
Alignment:
Q  227 ttgaagttcgaaaataacattacaataccaataaaagtggtctatccaaaataacatt 284  Q
    ||||||||| |||||| |||||||||||||||||||||  | |||| |||||||||||    
T  35402101 ttgaagttccaaaatagcattacaataccaataaaagttatttatctaaaataacatt 35402044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 429
Target Start/End: Complemental strand, 27641814 - 27641743
Alignment:
Q  358 cggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttgaaatttcggtttggattggt 429  Q
    ||||||| ||||||||||||| |||||||| |||||||| || ||||||||  | ||||  |||||||||||    
T  27641814 cggttcagtgcaaaagtcatctgaattcatccgaaccaagtgcggttttttacagtttcaatttggattggt 27641743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 344 - 382
Target Start/End: Original strand, 39098395 - 39098433
Alignment:
Q  344 caaaccgaaccgcacggttcaatgcaaaagtcatccgaa 382  Q
    |||| |||||||||||||||| |||||||||||||||||    
T  39098395 caaatcgaaccgcacggttcagtgcaaaagtcatccgaa 39098433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 284
Target Start/End: Complemental strand, 4669490 - 4669433
Alignment:
Q  227 ttgaagttcgaaaataacattacaataccaataaaagtggtctatccaaaataacatt 284  Q
    ||||||||| |||||| ||||||||||||||| |||||  | |||| |||||||||||    
T  4669490 ttgaagttcaaaaatagcattacaataccaatgaaagttatttatctaaaataacatt 4669433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 284
Target Start/End: Original strand, 10369403 - 10369460
Alignment:
Q  227 ttgaagttcgaaaataacattacaataccaataaaagtggtctatccaaaataacatt 284  Q
    ||||||||| |||||| ||||| |||||||||||||||  | |||| |||||||||||    
T  10369403 ttgaagttccaaaatagcattaaaataccaataaaagttatttatctaaaataacatt 10369460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 284
Target Start/End: Original strand, 34794775 - 34794832
Alignment:
Q  227 ttgaagttcgaaaataacattacaataccaataaaagtggtctatccaaaataacatt 284  Q
    ||||||||| |||||| ||||||||||||||||| |||  | |||| |||||||||||    
T  34794775 ttgaagttccaaaatagcattacaataccaataacagttatttatctaaaataacatt 34794832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 310 - 350
Target Start/End: Original strand, 33361320 - 33361360
Alignment:
Q  310 cggtttggttttgttcggttcgatttctgagatgcaaaccg 350  Q
    ||||||||||| |||||||||| || |||||||||||||||    
T  33361320 cggtttggtttggttcggttcggttgctgagatgcaaaccg 33361360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 310 - 350
Target Start/End: Complemental strand, 35401886 - 35401846
Alignment:
Q  310 cggtttggttttgttcggttcgatttctgagatgcaaaccg 350  Q
    ||||||||||| ||| ||||||||| |||||||||||||||    
T  35401886 cggtttggtttggtttggttcgattgctgagatgcaaaccg 35401846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 346 - 429
Target Start/End: Original strand, 14549702 - 14549785
Alignment:
Q  346 aaccgaaccgcacggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttgaaatttcggtttggattggt 429  Q
    ||||||||||| ||||||| |||||||||||||||||||||| |||||||| || | |||||||   |||||||||||||||||    
T  14549702 aaccgaaccgcgcggttcagtgcaaaagtcatccgaattcatccgaaccaagtgcgattttttgcggtttcggtttggattggt 14549785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 344 - 437
Target Start/End: Original strand, 44673201 - 44673294
Alignment:
Q  344 caaaccgaaccgcacggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttgaaatttcggtttggattggtatgattta 437  Q
    ||||||||||||| ||||||| |||||||||||||||||||||| |||||||| |  ||||||||| | |||  ||||| |||||| |||||||    
T  44673201 caaaccgaaccgcgcggttcagtgcaaaagtcatccgaattcatccgaaccaagtacggttttttgcagttttagtttgaattggtttgattta 44673294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 351 - 436
Target Start/End: Complemental strand, 6200535 - 6200450
Alignment:
Q  351 aaccgcacggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttgaaatttcggtttggattggtatgattt 436  Q
    ||||||||| |||| |||||||||||||||||||||| |||||||||||  ||||||||   ||||| ||||||||| | ||||||    
T  6200535 aaccgcacgattcagtgcaaaagtcatccgaattcatccgaaccaaatgcagttttttgcggtttcgatttggattgatttgattt 6200450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 344 - 436
Target Start/End: Original strand, 3682390 - 3682482
Alignment:
Q  344 caaaccgaaccgcacggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttgaaatttcggtttggattggtatgattt 436  Q
    |||||| |||||| ||||||| || ||||||||||||| |||||| ||||||| || |||||||||   ||| | ||||||||||| ||||||    
T  3682390 caaaccaaaccgcgcggttcagtggaaaagtcatccgatttcatttgaaccaagtgcggttttttgcggttttgatttggattggtttgattt 3682482  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 227 - 284
Target Start/End: Complemental strand, 3006464 - 3006407
Alignment:
Q  227 ttgaagttcgaaaataacattacaataccaataaaagtggtctatccaaaataacatt 284  Q
    ||||||||| |||||| |||||||||||||||||||||  | |||| |||||||||||    
T  3006464 ttgaagttccaaaatagcattacaataccaataaaagttatttatctaaaataacatt 3006407  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 344 - 429
Target Start/End: Complemental strand, 18169637 - 18169553
Alignment:
Q  344 caaaccgaaccgcacggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttgaaatttcggtttggattggt 429  Q
    ||||||||||| | ||||||| ||||||||| ||||||| |||| |||||||| || | |||||||   |||||||||||||||||    
T  18169637 caaaccgaaccacgcggttcagtgcaaaagtaatccgaa-tcatccgaaccaactgcgattttttgcgttttcggtttggattggt 18169553  T

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Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 344 - 429
Target Start/End: Complemental strand, 18633203 - 18633119
Alignment:
Q  344 caaaccgaaccgcacggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttgaaatttcggtttggattggt 429  Q
    ||||||||||| | ||||||| ||||||||| ||||||| |||| |||||||| || | |||||||   |||||||||||||||||    
T  18633203 caaaccgaaccacgcggttcagtgcaaaagtaatccgaa-tcatccgaaccaactgcgattttttgcgttttcggtttggattggt 18633119  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 343 - 429
Target Start/End: Complemental strand, 3006244 - 3006158
Alignment:
Q  343 gcaaaccgaaccgcacggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttgaaatttcggtttggattggt 429  Q
    |||||||||||||| ||||||| |  |||||| ||||||| |||| |||||||| || || ||||||   ||||||||||| |||||    
T  3006244 gcaaaccgaaccgcgcggttcagtctaaaagtaatccgaactcatccgaaccaagtgcggatttttgctgtttcggtttgggttggt 3006158  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 264
Target Start/End: Complemental strand, 5803137 - 5803100
Alignment:
Q  227 ttgaagttcgaaaataacattacaataccaataaaagt 264  Q
    ||||||||| |||||| |||||||||||||||||||||    
T  5803137 ttgaagttccaaaatagcattacaataccaataaaagt 5803100  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 429
Target Start/End: Complemental strand, 12659805 - 12659752
Alignment:
Q  376 atccgaattcattcgaaccaaatgtggttttttgaaatttcggtttggattggt 429  Q
    |||||||| ||| ||||||||||| |||||||||   |||||||||||||||||    
T  12659805 atccgaatacatccgaaccaaatgcggttttttgcggtttcggtttggattggt 12659752  T

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Target: scaffold0029 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 344 - 425
Target Start/End: Complemental strand, 40180 - 40099
Alignment:
Q  344 caaaccgaaccgcacggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttgaaatttcggtttggat 425  Q
    |||||||| || | ||||||| |||||||||||||||||||||| |||||||| || |||||||||  ||||||||||||||    
T  40180 caaaccgagccacgcggttcagtgcaaaagtcatccgaattcatccgaaccaagtgcggttttttgcgatttcggtttggat 40099  T

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Target: scaffold0029; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 358 - 425
Target Start/End: Complemental strand, 47362 - 47295
Alignment:
Q  358 cggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttgaaatttcggtttggat 425  Q
    ||||||| |||||||||||||||||||||| |||||||| || |||||||||  ||||||||||||||    
T  47362 cggttcagtgcaaaagtcatccgaattcatccgaaccaagtgcggttttttgcgatttcggtttggat 47295  T

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Target: scaffold0059 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 344 - 427
Target Start/End: Complemental strand, 69141 - 69058
Alignment:
Q  344 caaaccgaaccgcacggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttgaaatttcggtttggattg 427  Q
    ||||||||||||| ||||||| |||||||||||||||||||||| | |||||||||  ||||||||   ||| |||||||||||    
T  69141 caaaccgaaccgcgcggttcattgcaaaagtcatccgaattcatccaaaccaaatgctgttttttgcggtttaggtttggattg 69058  T

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Target: scaffold0059; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 344 - 427
Target Start/End: Complemental strand, 77247 - 77164
Alignment:
Q  344 caaaccgaaccgcacggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttgaaatttcggtttggattg 427  Q
    ||||||||||||| ||||||| |||||||||||||||||||||| | |||||||||  ||||||||   ||| |||||||||||    
T  77247 caaaccgaaccgcgcggttcattgcaaaagtcatccgaattcatccaaaccaaatgctgttttttgcggtttaggtttggattg 77164  T

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Target: scaffold0308 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 227 - 284
Target Start/End: Complemental strand, 5784 - 5727
Alignment:
Q  227 ttgaagttcgaaaataacattacaataccaataaaagtggtctatccaaaataacatt 284  Q
    ||||||||| ||||||||||||||||||||||||||||  | |||| |||||||||||    
T  5784 ttgaagttccaaaataacattacaataccaataaaagttatttatctaaaataacatt 5727  T

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Target: scaffold0308; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 409
Target Start/End: Complemental strand, 5521 - 5458
Alignment:
Q  346 aaccgaaccgcacggttcaatgcaaaagtcatccgaattcattcgaaccaaatgtggttttttg 409  Q
    ||||||||||| ||||||| |  ||||||||| |||| |||| ||||||||||| |||||||||    
T  5521 aaccgaaccgcgcggttcagtctaaaagtcattcgaactcatccgaaccaaatgcggttttttg 5458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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