View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7894_low_12 (Length: 495)
Name: NF7894_low_12
Description: NF7894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7894_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 454; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 18 - 479
Target Start/End: Original strand, 36889122 - 36889583
Alignment:
| Q |
18 |
attaatctagccatatagtaaattgttacattacaccttcaattaatctagccatatactatggcaatgattggtgatagtgacaacatattactcaaca |
117 |
Q |
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| T |
36889122 |
attaatctagccatatagtaaattgttacattacaccttcaattaatctagccatatactatggcaatgattggtgatagtgacaacatattactcaaca |
36889221 |
T |
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| Q |
118 |
tttcacccgatgaagtaaatgattttctaggtgagtatacatgggaaggtaaatgggaaaatgttataatgatttactatgcatttccagaacaagccca |
217 |
Q |
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| T |
36889222 |
tttcacccgatgaagtaaatgattttctaggtgagtatacatgggaaggtaaatgggaaaatgttataatgatttattatgcatttccagaacaagccca |
36889321 |
T |
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| Q |
218 |
caaagcaattatctctgattcagctggcactgcattgcatgtagccattgatttagacgaagaaattgttgttaaagagcttgtgaatgcaattttaaca |
317 |
Q |
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| T |
36889322 |
caaagcaattatctctgattcagctggcactgcattgcatgtagccattgatttagacgaagaaattgttgttaaagagcttgtgaatgcaattttaaca |
36889421 |
T |
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| Q |
318 |
cataatgtggaagttagtgatgaaagagttgaagcattggaaatggagaatgaacgtggagacacaccattgcattttgcagcatcaagaggttttgcaa |
417 |
Q |
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| T |
36889422 |
cataatgtggaagttagtgatgaaagagttgaagcattggaaatggagaatgaacgtggagacacaccattgcattttgcagcatcaagaggttttgcaa |
36889521 |
T |
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| Q |
418 |
gaatatgtaagtgtattattgggattaataatgagaggatatatttgttgagtcgtaaaaat |
479 |
Q |
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| T |
36889522 |
gaatatgtaagtgtattattgggattaacaatgagaggatatatttgttgagtcgtaaaaat |
36889583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 87 - 479
Target Start/End: Original strand, 36877053 - 36877427
Alignment:
| Q |
87 |
attggtgatagtgacaacatattactcaacatttcacccgatgaagtaaatgattttctaggtgagtatacatgggaaggtaaatgggaaaatgttataa |
186 |
Q |
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|||| ||||||||| ||||||||||||||||||||| |||||||||| || |||||| || ||||||| |||| ||||||||||||||| | ||| |||| |
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| T |
36877053 |
attgttgatagtgataacatattactcaacatttcatccgatgaagttaacgattttataagtgagtacacattggaaggtaaatgggatagtgtaataa |
36877152 |
T |
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| Q |
187 |
tgatttactatgcatttccagaacaagcccacaaagcaattatctctgattcagctggcactgcattgcatgtagccattgatttagacgaagaaattgt |
286 |
Q |
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| T |
36877153 |
ggttgtacaataaatttccagaacaagctcacacagcaattatctctgattcagctggcactccattgcatgtagccatagatttggacgaagaagatgt |
36877252 |
T |
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| Q |
287 |
tgttaaagagcttgtgaatgcaattttaacacataatgtggaagttagtgatgaaagagttgaagcattggaaatggagaatgaacgtggagacacacca |
386 |
Q |
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| T |
36877253 |
tgtcaatgagcttgtgaatgcaattttaacacataat----aatt--------------ttgaggcattggaaatggtgaatgaacgtggagacacacca |
36877334 |
T |
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| Q |
387 |
ttgcattttgcagcatcaagaggttttgcaagaatatgtaagtgtattattgggattaataatgagaggatatatttgttgagtcgtaaaaat |
479 |
Q |
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| T |
36877335 |
ttgcattttgcagcatcaaggggttttgcaagaatatgcaactgtataattggtagtgagaatgagaggatatatttgttgagttgtaaaaat |
36877427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 87 - 479
Target Start/End: Original strand, 36896020 - 36896394
Alignment:
| Q |
87 |
attggtgatagtgacaacatattactcaacatttcacccgatgaagtaaatgattttctaggtgagtatacatgggaaggtaaatgggaaaatgttataa |
186 |
Q |
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| T |
36896020 |
attgttgatagtgataacatattactcaacatttcatccgatgaaattaacgattttataagtgagtacacattggaaggtaaatgggatagtgtaataa |
36896119 |
T |
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| Q |
187 |
tgatttactatgcatttccagaacaagcccacaaagcaattatctctgattcagctggcactgcattgcatgtagccattgatttagacgaagaaattgt |
286 |
Q |
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| T |
36896120 |
ggttgtacaataaatttccagaacaagctcacacagcaattatctctgattcagctggcactgcattacatgtagccatagatttagacgaagaattttt |
36896219 |
T |
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| Q |
287 |
tgttaaagagcttgtgaatgcaattttaacacataatgtggaagttagtgatgaaagagttgaagcattggaaatggagaatgaacgtggagacacacca |
386 |
Q |
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| T |
36896220 |
tgtcgaaaagcttgtgcatgcaattttaatgcataat----aatt--------------tggaggcattggaaattgggaatgaacatggagacacacca |
36896301 |
T |
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| Q |
387 |
ttgcattttgcagcatcaagaggttttgcaagaatatgtaagtgtattattgggattaataatgagaggatatatttgttgagtcgtaaaaat |
479 |
Q |
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| T |
36896302 |
ttgcattttgcagcatcaaggggttttgcaagaatatgtaagtgtataattggtagtgagaatgagaggatatatttgttgagttgtaaaaat |
36896394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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