View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7894_low_14 (Length: 465)

Name: NF7894_low_14
Description: NF7894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7894_low_14
NF7894_low_14
[»] chr4 (17 HSPs)
chr4 (4-181)||(40494078-40494254)
chr4 (17-181)||(25961305-25961468)
chr4 (17-181)||(30391785-30391948)
chr4 (16-157)||(34018526-34018665)
chr4 (16-157)||(39500906-39501045)
chr4 (16-157)||(24149930-24150069)
chr4 (16-157)||(48636743-48636882)
chr4 (36-181)||(11194888-11195033)
chr4 (16-157)||(38284242-38284381)
chr4 (16-157)||(39494593-39494732)
chr4 (16-157)||(48416275-48416414)
chr4 (16-157)||(52531660-52531799)
chr4 (17-181)||(29545620-29545783)
chr4 (52-181)||(18673829-18673958)
chr4 (390-448)||(15167578-15167636)
chr4 (152-181)||(8875655-8875684)
chr4 (212-317)||(19851355-19851460)
[»] chr2 (25 HSPs)
chr2 (17-179)||(37937945-37938106)
chr2 (4-181)||(40259872-40260049)
chr2 (36-182)||(1387167-1387312)
chr2 (16-157)||(11348621-11348760)
chr2 (16-157)||(31586649-31586788)
chr2 (16-157)||(40780692-40780831)
chr2 (16-157)||(9186170-9186309)
chr2 (4-157)||(24237588-24237739)
chr2 (16-157)||(25960416-25960555)
chr2 (16-157)||(30148643-30148782)
chr2 (16-157)||(37280423-37280562)
chr2 (36-157)||(25955853-25955973)
chr2 (4-157)||(24234316-24234467)
chr2 (16-157)||(25957190-25957329)
chr2 (16-157)||(43208636-43208775)
chr2 (16-157)||(9189399-9189538)
chr2 (16-157)||(8887876-8888015)
chr2 (36-184)||(16178339-16178487)
chr2 (16-157)||(42369436-42369585)
chr2 (52-181)||(16791518-16791646)
chr2 (90-174)||(27265990-27266073)
chr2 (90-181)||(12219073-12219163)
chr2 (36-181)||(9967059-9967204)
chr2 (53-133)||(22630083-22630164)
chr2 (4-56)||(17876737-17876788)
[»] chr3 (38 HSPs)
chr3 (4-181)||(17140729-17140904)
chr3 (4-181)||(46985867-46986042)
chr3 (4-181)||(54719345-54719520)
chr3 (4-181)||(52987703-52987880)
chr3 (36-181)||(12561984-12562129)
chr3 (17-185)||(46884246-46884413)
chr3 (40-180)||(32288080-32288217)
chr3 (52-181)||(48064781-48064910)
chr3 (16-157)||(11189861-11190000)
chr3 (16-157)||(25584015-25584154)
chr3 (38-181)||(28008800-28008944)
chr3 (17-157)||(12535805-12535943)
chr3 (16-157)||(2778049-2778188)
chr3 (16-157)||(2872887-2873026)
chr3 (16-157)||(24124821-24124960)
chr3 (16-157)||(30690058-30690197)
chr3 (16-157)||(49743652-49743791)
chr3 (16-157)||(54723064-54723203)
chr3 (16-157)||(2774827-2774966)
chr3 (16-157)||(43926158-43926297)
chr3 (16-157)||(50462282-50462421)
chr3 (36-157)||(24128098-24128218)
chr3 (17-179)||(15196035-15196196)
chr3 (36-157)||(7485894-7486014)
chr3 (16-157)||(45895693-45895842)
chr3 (75-181)||(17040812-17040918)
chr3 (56-181)||(11784063-11784188)
chr3 (36-181)||(27091188-27091333)
chr3 (101-157)||(8462467-8462523)
chr3 (52-181)||(22417600-22417729)
chr3 (101-157)||(6445579-6445635)
chr3 (52-181)||(22010669-22010798)
chr3 (101-157)||(28265027-28265083)
chr3 (91-181)||(32367935-32368024)
chr3 (36-67)||(30220759-30220790)
chr3 (152-181)||(3293825-3293854)
chr3 (36-64)||(11784181-11784209)
chr3 (16-68)||(24128207-24128258)
[»] chr7 (13 HSPs)
chr7 (17-181)||(20593478-20593641)
chr7 (17-181)||(9133469-9133631)
chr7 (16-157)||(37166897-37167036)
chr7 (16-157)||(23225656-23225796)
chr7 (16-157)||(23234809-23234949)
chr7 (16-157)||(11951143-11951282)
chr7 (17-181)||(9405478-9405641)
chr7 (17-181)||(10468344-10468507)
chr7 (4-157)||(4861028-4861190)
chr7 (52-181)||(26145291-26145420)
chr7 (52-181)||(26136911-26137040)
chr7 (17-182)||(22612258-22612416)
chr7 (146-182)||(219099-219135)
[»] scaffold0321 (1 HSPs)
scaffold0321 (4-181)||(3669-3847)
[»] chr8 (12 HSPs)
chr8 (16-184)||(23593310-23593476)
chr8 (4-181)||(8910862-8911037)
chr8 (4-181)||(31283880-31284057)
chr8 (16-157)||(16953032-16953171)
chr8 (17-181)||(33418844-33419006)
chr8 (17-181)||(21280514-21280677)
chr8 (36-181)||(10498978-10499113)
chr8 (53-181)||(13196058-13196186)
chr8 (80-181)||(17930230-17930330)
chr8 (53-181)||(2559798-2559927)
chr8 (101-157)||(17895435-17895491)
chr8 (52-181)||(23621086-23621215)
[»] chr6 (19 HSPs)
chr6 (16-181)||(19475218-19475381)
chr6 (37-179)||(13941780-13941922)
chr6 (16-157)||(11188662-11188801)
chr6 (17-181)||(11126442-11126605)
chr6 (16-157)||(11730081-11730220)
chr6 (16-157)||(28229834-28229973)
chr6 (16-157)||(30654683-30654822)
chr6 (90-181)||(4511714-4511804)
chr6 (17-179)||(26898616-26898776)
chr6 (16-157)||(2378469-2378608)
chr6 (36-157)||(15543249-15543369)
chr6 (36-181)||(22561890-22562034)
chr6 (17-181)||(31880140-31880300)
chr6 (16-113)||(11401540-11401635)
chr6 (16-157)||(26943180-26943311)
chr6 (53-181)||(24399395-24399523)
chr6 (103-181)||(18856856-18856933)
chr6 (115-157)||(3597506-3597548)
chr6 (151-181)||(24409526-24409556)
[»] chr5 (14 HSPs)
chr5 (4-182)||(26908113-26908291)
chr5 (17-181)||(40582463-40582625)
chr5 (36-181)||(12059256-12059401)
chr5 (16-157)||(41307272-41307411)
chr5 (53-181)||(23043399-23043527)
chr5 (16-157)||(26753447-26753586)
chr5 (61-181)||(26292086-26292205)
chr5 (16-157)||(34831011-34831140)
chr5 (36-181)||(18951976-18952121)
chr5 (36-157)||(41877529-41877649)
chr5 (52-181)||(34133743-34133872)
chr5 (52-181)||(34143993-34144122)
chr5 (16-157)||(12087186-12087335)
chr5 (152-181)||(17663753-17663782)
[»] scaffold0048 (2 HSPs)
scaffold0048 (36-181)||(24035-24180)
scaffold0048 (52-181)||(28273-28402)
[»] scaffold0084 (2 HSPs)
scaffold0084 (4-181)||(18602-18778)
scaffold0084 (39-181)||(28578-28720)
[»] scaffold0250 (1 HSPs)
scaffold0250 (16-157)||(18633-18772)
[»] scaffold0038 (1 HSPs)
scaffold0038 (16-157)||(30332-30471)
[»] chr1 (9 HSPs)
chr1 (35-181)||(673752-673899)
chr1 (16-157)||(37184610-37184749)
chr1 (53-181)||(906468-906596)
chr1 (16-157)||(3797550-3797689)
chr1 (16-157)||(45940655-45940793)
chr1 (16-157)||(23022669-23022809)
chr1 (4-157)||(28110317-28110469)
chr1 (17-157)||(20398101-20398249)
chr1 (152-181)||(34067323-34067352)
[»] scaffold0065 (1 HSPs)
scaffold0065 (17-181)||(59427-59591)
[»] scaffold0056 (1 HSPs)
scaffold0056 (17-104)||(68271-68357)
[»] scaffold1785 (1 HSPs)
scaffold1785 (17-179)||(620-781)
[»] scaffold0035 (1 HSPs)
scaffold0035 (17-179)||(63230-63391)
[»] scaffold0216 (1 HSPs)
scaffold0216 (17-181)||(12678-12841)
[»] scaffold0427 (2 HSPs)
scaffold0427 (75-157)||(4597-4678)
scaffold0427 (16-60)||(4534-4577)
[»] scaffold0037 (1 HSPs)
scaffold0037 (17-132)||(95871-95985)


Alignment Details
Target: chr4 (Bit Score: 138; Significance: 6e-72; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 4 - 181
Target Start/End: Original strand, 40494078 - 40494254
Alignment:
Q  4 atgtcgaagaatattttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgctctttt 103  Q
    ||||||||| || |||||||||||||||| | ||||||||||||||||||||| || ||||||||||||||||||||||||||  |||||||||||||||    
T  40494078 atgtcgaagcatgttttggtcttctaaaatc-gtgtcacgtttttaccaaatcatggcacgttttctttccttgtattttcttcggttttctgctctttt 40494176  T
Q  104 tgctgcataagttgccttctgaactccaaattgtgatcaaaatacatataaaaattacgtaatgacgagatgtcatca 181  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40494177 tgctgcataagttgccttgtgaactccaaattgtgatcaaaatacatataaaaattacgtaatgacgagatgtcatca 40494254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 17 - 181
Target Start/End: Complemental strand, 25961468 - 25961305
Alignment:
Q  17 ttttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgctctttttgctgcataagtt 116  Q
    |||||||||||||||| | |||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  25961468 ttttggtcttctaaaatc-gtgtcacgtttttaccaaatagtgacacgttttcttcccttgtattttcttcagttttctgctctttttgctgcataagtt 25961370  T
Q  117 gccttctgaactccaaattgtgatcaaaatacatataaaaattacgtaatgacgagatgtcatca 181  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25961369 gccttgtgaactccaaattgtgatcaaaatacatataaaaattacgtaatgacgagatgtcatca 25961305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 17 - 181
Target Start/End: Complemental strand, 30391948 - 30391785
Alignment:
Q  17 ttttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagtttt-ctgctctttttgctgcataagt 115  Q
    |||||||||||||||| | ||||||||||| |||||||||||||||||||||||||| ||| |||||||| |||||| |||||||||||| |||||||||    
T  30391948 ttttggtcttctaaaatc-gtgtcacgtttataccaaatcgtgacacgttttctttctttgcattttcttcagtttttctgctctttttgttgcataagt 30391850  T
Q  116 tgccttctgaactccaaattgtgatcaaaatacatataaaaattacgtaatgacgagatgtcatca 181  Q
    | |||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  30391849 ttccttgtgaactccaatttgtgatcaaaatacatat-aaaattacgtaatgacgagatatcatca 30391785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 16 - 157
Target Start/End: Original strand, 34018526 - 34018665
Alignment:
Q  16 attttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgctctttttgctgcataagt 115  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||||| ||   ||| |||||||||||| |||||||| ||||||| |||||||||||    
T  34018526 attttggtcttctaaaatc-gtgtcacgtttttaccaaatcgtgacacgattctcttctttgtattttcttcagttttctactctttt-gctgcataagt 34018623  T
Q  116 tgccttctgaactccaaattgtgatcaaaatacatataaaaa 157  Q
    ||||||||||||||||| ||||||||||| ||||||||||||    
T  34018624 tgccttctgaactccaatttgtgatcaaactacatataaaaa 34018665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 16 - 157
Target Start/End: Complemental strand, 39501045 - 39500906
Alignment:
Q  16 attttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgctctttttgctgcataagt 115  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||||| ||   ||| |||||||||||| |||||||| ||||||| |||||||||||    
T  39501045 attttggtcttctaaaatc-gtgtcacgtttttaccaaatcgtgacacgattctgttctttgtattttcttcagttttctactctttt-gctgcataagt 39500948  T
Q  116 tgccttctgaactccaaattgtgatcaaaatacatataaaaa 157  Q
    |||||| |||||||||| ||||||||||||||||||||||||    
T  39500947 tgccttgtgaactccaatttgtgatcaaaatacatataaaaa 39500906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 16 - 157
Target Start/End: Complemental strand, 24150069 - 24149930
Alignment:
Q  16 attttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgctctttttgctgcataagt 115  Q
    ||||||||||||||||| | |||||||||||||| |||||||||||||| ||   ||| |||||||||||| |||||||| ||||||| |||||||||||    
T  24150069 attttggtcttctaaaatc-gtgtcacgtttttatcaaatcgtgacacgattctcttctttgtattttcttcagttttctactctttt-gctgcataagt 24149972  T
Q  116 tgccttctgaactccaaattgtgatcaaaatacatataaaaa 157  Q
    |||||| |||||||||| ||||||||||||||||||||||||    
T  24149971 tgccttgtgaactccaatttgtgatcaaaatacatataaaaa 24149930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 16 - 157
Target Start/End: Complemental strand, 48636882 - 48636743
Alignment:
Q  16 attttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgctctttttgctgcataagt 115  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||||| ||   ||| |||||||||||| |||||||| ||||||| |||||||||||    
T  48636882 attttggtcttctaaaatc-gtgtcacgtttttaccaaatcgtgacacgattctcttctttgtattttcttcagttttctactctttt-gctgcataagt 48636785  T
Q  116 tgccttctgaactccaaattgtgatcaaaatacatataaaaa 157  Q
    || ||| |||||||||| ||||||||||||||||||||||||    
T  48636784 tgtcttgtgaactccaatttgtgatcaaaatacatataaaaa 48636743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 36 - 181
Target Start/End: Complemental strand, 11195033 - 11194888
Alignment:
Q  36 gtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagtttt-ctgctctttttgctgcataagttgccttctgaactccaaat 134  Q
    ||||||||||||   | ||||||||||| ||||  ||| ||| |||||||| |||||| |||||||||||||||||||||||||||| |||||||||| |    
T  11195033 gtgtcacgttttctgccaatcgtgacacattttgcttctttgcattttcttcagtttttctgctctttttgctgcataagttgccttgtgaactccaatt 11194934  T
Q  135 tgtgatcaaaatacatataaaaattacgtaatgacgagatgtcatca 181  Q
    | |||||||||||||||| ||||||||||||||||||||||||||||    
T  11194933 tatgatcaaaatacatat-aaaattacgtaatgacgagatgtcatca 11194888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 16 - 157
Target Start/End: Original strand, 38284242 - 38284381
Alignment:
Q  16 attttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgctctttttgctgcataagt 115  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||||| ||   ||| |||||||||||| |||||||| || |||| ||||||||| |    
T  38284242 attttggtcttctaaaatc-gtgtcacgtttttaccaaatcgtgacacgattctcttctttgtattttcttcagttttctactatttt-gctgcataaat 38284339  T
Q  116 tgccttctgaactccaaattgtgatcaaaatacatataaaaa 157  Q
    |||||| |||||||||| ||||||||||||||||||||||||    
T  38284340 tgccttgtgaactccaatttgtgatcaaaatacatataaaaa 38284381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 16 - 157
Target Start/End: Complemental strand, 39494732 - 39494593
Alignment:
Q  16 attttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgctctttttgctgcataagt 115  Q
    ||||||||||||||||| | ||||||||||||||| ||||||||||||| ||   ||| |||||||||||| |||||||| ||||||| |||||||||||    
T  39494732 attttggtcttctaaaatc-gtgtcacgtttttacaaaatcgtgacacgattctcttctttgtattttcttcagttttctactctttt-gctgcataagt 39494635  T
Q  116 tgccttctgaactccaaattgtgatcaaaatacatataaaaa 157  Q
    |||||| |||| ||||| ||||||||||||||||||||||||    
T  39494634 tgccttgtgaattccaatttgtgatcaaaatacatataaaaa 39494593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 16 - 157
Target Start/End: Original strand, 48416275 - 48416414
Alignment:
Q  16 attttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgctctttttgctgcataagt 115  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||||| ||   ||| |||||||||||| |||||||| ||| |||||||||||||||    
T  48416275 attttggtcttctaaaatc-gtgtcacgtttttaccaaatcgtgacacgattctcttctttgtattttcttcagttttctactc-ttttgctgcataagt 48416372  T
Q  116 tgccttctgaactccaaattgtgatcaaaatacatataaaaa 157  Q
    |  ||| |||||||||| ||||||||||| ||||||||||||    
T  48416373 taacttgtgaactccaatttgtgatcaaactacatataaaaa 48416414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 16 - 157
Target Start/End: Original strand, 52531660 - 52531799
Alignment:
Q  16 attttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgctctttttgctgcataagt 115  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||| | ||   ||| |||||||||||| |||||||| ||||||| |||||||||||    
T  52531660 attttggtcttctaaaatc-gtgtcacgtttttaccaaatcgtgacatgattctcttctttgtattttcttcagttttctactctttt-gctgcataagt 52531757  T
Q  116 tgccttctgaactccaaattgtgatcaaaatacatataaaaa 157  Q
    || ||| |||||||||| ||||||||||| ||||||||||||    
T  52531758 tgacttgtgaactccaatttgtgatcaaactacatataaaaa 52531799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 17 - 181
Target Start/End: Original strand, 29545620 - 29545783
Alignment:
Q  17 ttttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttag-ttttctgctctttttgctgcataagt 115  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||||||  ||| ||| |||||||| || |||| || ||||||||||||||||||    
T  29545620 ttttggtcttctaaaatc-gtgtcacgtttttaccaaatcgtgacacgttttgcttctttgcattttcttcagtttttttgttctttttgctgcataagt 29545718  T
Q  116 tgccttctgaactccaaattgtgatcaaaatacatataaaaattacgtaatgacgagatgtcatca 181  Q
     ||||| ||||||||||| ||| ||||   |||| |  |||||||||||||||| |||||||||||    
T  29545719 ggccttgtgaactccaaaatgtaatcagtttacaca-gaaaattacgtaatgacaagatgtcatca 29545783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 52 - 181
Target Start/End: Original strand, 18673829 - 18673958
Alignment:
Q  52 aaatcgtgacacgttttctttccttgtattttctttagt-tttctgctctttttgctgcataagttgccttctgaactccaaattgtgatcaaaa-taca 149  Q
    ||||||||||||| |||  ||| |||||||||||  ||  |||||||| || |||||||||||||||| || ||||||||||| |||||| |||| |||     
T  18673829 aaatcgtgacacgatttgcttctttgtattttctacagaatttctgcttttcttgctgcataagttgctttgtgaactccaaaatgtgataaaaagtac- 18673927  T
Q  150 tataaaaattacgtaatgacgagatgtcatca 181  Q
     ||||||||||||||||||| |||||||||||    
T  18673928 -ataaaaattacgtaatgacaagatgtcatca 18673958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 390 - 448
Target Start/End: Complemental strand, 15167636 - 15167578
Alignment:
Q  390 ttttgggtcacacaataaggaaatataagaaaattagtaccaatagcactgtagtaggt 448  Q
    |||||||||||||||||| | ||| || ||||||||||||||||||||||| |||||||    
T  15167636 ttttgggtcacacaataatgcaatgtacgaaaattagtaccaatagcactgcagtaggt 15167578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 181
Target Start/End: Original strand, 8875655 - 8875684
Alignment:
Q  152 taaaaattacgtaatgacgagatgtcatca 181  Q
    ||||||||||||||||||||||||||||||    
T  8875655 taaaaattacgtaatgacgagatgtcatca 8875684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 317
Target Start/End: Original strand, 19851355 - 19851460
Alignment:
Q  212 tgagattcttttgttagtccaaagattttaatcctcaaacacaagtccaatctcatgctcaaatttgggtgaggctgctaaatcttccccaagagtattg 311  Q
    ||||||||||||| | ||| || |||||| |||||||||  ||  | ||||||||||||||| | ||||| ||| |  | ||||| |||||||| |||||    
T  19851355 tgagattcttttgctggtctaaggattttgatcctcaaaatcagattcaatctcatgctcaattgtgggtaaggtttatgaatctcccccaagaatattg 19851454  T
Q  312 gaggaa 317  Q
    ||||||    
T  19851455 gaggaa 19851460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 131; Significance: 9e-68; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 17 - 179
Target Start/End: Original strand, 37937945 - 37938106
Alignment:
Q  17 ttttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgctctttttgctgcataagtt 116  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||    
T  37937945 ttttggtcttctaaaatc-gtgtcacgtttttaccaaatcgtgacacgttttcttcccttgtattttcttcagttttccgctctttttgctgcataagtt 37938043  T
Q  117 gccttctgaactccaaattgtgatcaaaatacatataaaaattacgtaatgacgagatgtcat 179  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  37938044 gccttgtgaactccaaattgtgatcaaaatacatataaaaattatgtaatgacgagatgtcat 37938106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 4 - 181
Target Start/End: Original strand, 40259872 - 40260049
Alignment:
Q  4 atgtcgaagaat-attttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagtttt-ctgctctt 101  Q
    ||||||||| || ||||||||||||||||| | |||||||||||||||||||||||||||||||||||| | |||||||||||  |||||| ||||||||    
T  40259872 atgtcgaagcatgattttggtcttctaaaatc-gtgtcacgtttttaccaaatcgtgacacgttttctt-ctttgtattttctccagtttttctgctctt 40259969  T
Q  102 tttgctgcataagttgccttctgaactccaaattgtgatcaaaatacatataaaaattacgtaatgacgagatgtcatca 181  Q
    |||||| ||||||||||||| |||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  40259970 tttgctacataagttgccttgtgaactccactttgtgatcaaaatacatataaaaattacgtaatgacgagatatcatca 40260049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 36 - 182
Target Start/End: Original strand, 1387167 - 1387312
Alignment:
Q  36 gtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgctctttttgctgcataagttgccttctgaactccaaatt 135  Q
    ||||||| ||||||||||||||||||||| |||| ||| |||||||||||| | |||||||||||||| ||||||||||||||||| |||||||||  ||    
T  1387167 gtgtcacatttttaccaaatcgtgacacgatttccttctttgtattttcttcatttttctgctctttt-gctgcataagttgccttgtgaactccacttt 1387265  T
Q  136 gtgatcaaaatacatataaaaattacgtaatgacgagatgtcatcat 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  1387266 gtgatcaaaatacatataaaaattacgtaatgacgagatgtcatcat 1387312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 16 - 157
Target Start/End: Original strand, 11348621 - 11348760
Alignment:
Q  16 attttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgctctttttgctgcataagt 115  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||| ||   ||| |||||||||||| |||||||| ||||||| |||||||||||    
T  11348621 attttggtcttctaaaat-tgtgtcacgtttttaccaaatcgtgacacgattctgttctttgtattttcttcagttttctactctttt-gctgcataagt 11348718  T
Q  116 tgccttctgaactccaaattgtgatcaaaatacatataaaaa 157  Q
    |||||| |||||||||| ||||||||||||||||||||||||    
T  11348719 tgccttgtgaactccaatttgtgatcaaaatacatataaaaa 11348760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 16 - 157
Target Start/End: Original strand, 31586649 - 31586788
Alignment:
Q  16 attttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgctctttttgctgcataagt 115  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||||| ||   ||| |||||||||||| |||||||| ||||||| |||||||||||    
T  31586649 attttggtcttctaaaatc-gtgtcacgtttttaccaaatcgtgacacgattctcttctttgtattttcttcagttttctactctttt-gctgcataagt 31586746  T
Q  116 tgccttctgaactccaaattgtgatcaaaatacatataaaaa 157  Q
    |||||| |||||||||| ||||||||||||||||||||||||    
T  31586747 tgccttgtgaactccaatttgtgatcaaaatacatataaaaa 31586788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 16 - 157
Target Start/End: Complemental strand, 40780831 - 40780692
Alignment:
Q  16 attttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgctctttttgctgcataagt 115  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||||| ||   ||| |||||||||||| |||||||| ||| ||| |||||||||||    
T  40780831 attttggtcttctaaaatc-gtgtcacgtttttaccaaatcgtgacacgattctcttctttgtattttcttcagttttctactcattt-gctgcataagt 40780734  T
Q  116 tgccttctgaactccaaattgtgatcaaaatacatataaaaa 157  Q
    |||||| |||||||||| ||||||||||||||||||||||||    
T  40780733 tgccttgtgaactccaatttgtgatcaaaatacatataaaaa 40780692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 16 - 157
Target Start/End: Original strand, 9186170 - 9186309
Alignment:
Q  16 attttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgctctttttgctgcataagt 115  Q
    ||||||||||||||||| | ||||||| ||||||||||||||||||||| ||   ||| |||||||||||| |||||||| ||||||  |||||||||||    
T  9186170 attttggtcttctaaaatc-gtgtcacatttttaccaaatcgtgacacgattctcttctttgtattttcttcagttttctactctttg-gctgcataagt 9186267  T
Q  116 tgccttctgaactccaaattgtgatcaaaatacatataaaaa 157  Q
    |||||| |||||||||| ||||||||||||||||||||||||    
T  9186268 tgccttgtgaactccaatttgtgatcaaaatacatataaaaa 9186309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 4 - 157
Target Start/End: Complemental strand, 24237739 - 24237588
Alignment:
Q  4 atgtcgaagaatattttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgctctttt 103  Q
    ||||||||| |  ||||||| |||||||| | ||||||||||||||||||||||||||||| ||   ||| |||||||||||| |||||||| |||||||    
T  24237739 atgtcgaagcaagttttggtattctaaaatc-gtgtcacgtttttaccaaatcgtgacacgattctcttctttgtattttcttcagttttctactctttt 24237641  T
Q  104 tgctgcataagttgccttctgaactccaaattgtgatcaaaatacatataaaaa 157  Q
     ||||||||||||||||| |||||||||  ||||||||||||||||||||||||    
T  24237640 -gctgcataagttgccttgtgaactccactttgtgatcaaaatacatataaaaa 24237588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 16 - 157
Target Start/End: Original strand, 25960416 - 25960555
Alignment:
Q  16 attttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgctctttttgctgcataagt 115  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||||| ||   ||| |||||||||||| |||||||| ||||||| ||||||| |||    
T  25960416 attttggtcttctaaaatc-gtgtcacgtttttaccaaatcgtgacacgattctcttctttgtattttcttcagttttctactctttt-gctgcatcagt 25960513  T
Q  116 tgccttctgaactccaaattgtgatcaaaatacatataaaaa 157  Q
    |||||| |||||||||| ||||||||||| ||||||||||||    
T  25960514 tgccttgtgaactccaatttgtgatcaaactacatataaaaa 25960555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 16 - 157
Target Start/End: Complemental strand, 30148782 - 30148643
Alignment:
Q  16 attttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgctctttttgctgcataagt 115  Q
    |||||||| |||||||| | |||||||||||||||||||||||| |||| ||   ||| |||||||||||| |||||||| ||||||| |||||||||||    
T  30148782 attttggttttctaaaatc-gtgtcacgtttttaccaaatcgtggcacgattctcttctttgtattttcttcagttttctactctttt-gctgcataagt 30148685  T
Q  116 tgccttctgaactccaaattgtgatcaaaatacatataaaaa 157  Q
    |||||| |||||||||| ||||||||||||||||||||||||    
T  30148684 tgccttgtgaactccaatttgtgatcaaaatacatataaaaa 30148643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 16 - 157
Target Start/End: Original strand, 37280423 - 37280562
Alignment:
Q  16 attttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgctctttttgctgcataagt 115  Q
    ||||||||||||||||| | ||||| ||||||||||||||||||||||| ||   ||| |||||||||||| |||||||| ||||||| | |||||||||    
T  37280423 attttggtcttctaaaatc-gtgtcgcgtttttaccaaatcgtgacacgattctcttctttgtattttcttcagttttctactctttt-gttgcataagt 37280520  T
Q  116 tgccttctgaactccaaattgtgatcaaaatacatataaaaa 157  Q
    |||||| |||||||||| ||||||||||||||||||||||||    
T  37280521 tgccttgtgaactccaatttgtgatcaaaatacatataaaaa 37280562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 36 - 157
Target Start/End: Complemental strand, 25955973 - 25955853
Alignment:
Q  36 gtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgctctttttgctgcataagttgccttctgaactccaaatt 135  Q
    ||||||||||||||||||||||||||||| ||   ||| |||||||||||| |||||||| ||||||| ||||||||||||||||| |||||||||| ||    
T  25955973 gtgtcacgtttttaccaaatcgtgacacgattctcttctttgtattttcttcagttttctactctttt-gctgcataagttgccttgtgaactccaattt 25955875  T
Q  136 gtgatcaaaatacatataaaaa 157  Q
    ||||||||| ||||||||||||    
T  25955874 gtgatcaaactacatataaaaa 25955853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 4 - 157
Target Start/End: Complemental strand, 24234467 - 24234316
Alignment:
Q  4 atgtcgaagaatattttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgctctttt 103  Q
    ||||||||| |  |||||||||||||||| | ||||||| ||||||||| ||||||||||| ||   ||| |||||||||||| |||||||| |||||||    
T  24234467 atgtcgaagcaatttttggtcttctaaaatc-gtgtcacatttttaccagatcgtgacacgattctcttctttgtattttcttcagttttctactctttt 24234369  T
Q  104 tgctgcataagttgccttctgaactccaaattgtgatcaaaatacatataaaaa 157  Q
     ||||||||||||||||| |||||||||  |||||||||||||| |||||||||    
T  24234368 -gctgcataagttgccttgtgaactccactttgtgatcaaaatatatataaaaa 24234316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 16 - 157
Target Start/End: Original strand, 25957190 - 25957329
Alignment:
Q  16 attttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgctctttttgctgcataagt 115  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||||| ||   ||| |||| ||||||| |||||||| ||||||| ||| || ||||    
T  25957190 attttggtcttctaaaatc-gtgtcacgtttttaccaaatcgtgacacgattctcttctttgttttttcttcagttttctactctttt-gctacagaagt 25957287  T
Q  116 tgccttctgaactccaaattgtgatcaaaatacatataaaaa 157  Q
    |||||| |||||||||| ||||||||||| ||||||||||||    
T  25957288 tgccttgtgaactccaatttgtgatcaaactacatataaaaa 25957329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 16 - 157
Target Start/End: Original strand, 43208636 - 43208775
Alignment:
Q  16 attttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgctctttttgctgcataagt 115  Q
    ||||||||||||||||| |  |||||||||||||||||||||||||||| ||   ||| |||||||||||| | |||||| ||||||| | |||||||||    
T  43208636 attttggtcttctaaaatca-tgtcacgtttttaccaaatcgtgacacgattctcttctttgtattttcttcaattttctactctttt-gttgcataagt 43208733  T
Q  116 tgccttctgaactccaaattgtgatcaaaatacatataaaaa 157  Q
    |||| | |||||||||| ||||||||||||||||||||||||    
T  43208734 tgccatgtgaactccaatttgtgatcaaaatacatataaaaa 43208775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 16 - 157
Target Start/End: Original strand, 9189399 - 9189538
Alignment:
Q  16 attttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgctctttttgctgcataagt 115  Q
    ||||||||||| ||||| | |||||||||||||||||||||  |||| | ||   ||| |||||||||||| |||||||| ||||||  |||||||||||    
T  9189399 attttggtcttttaaaatc-gtgtcacgtttttaccaaatctcgacatgattctcttctttgtattttcttcagttttctactctttg-gctgcataagt 9189496  T
Q  116 tgccttctgaactccaaattgtgatcaaaatacatataaaaa 157  Q
    |||||| |||||||||| ||||||||||||||||||||||||    
T  9189497 tgccttgtgaactccaatttgtgatcaaaatacatataaaaa 9189538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 16 - 157
Target Start/End: Complemental strand, 8888015 - 8887876
Alignment:
Q  16 attttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgctctttttgctgcataagt 115  Q
    |||||| |||||||||| | |||| |||||||||||||||||||||||| ||   ||  ||||||||| || |||||||| ||||||| |||||||||||    
T  8888015 attttgatcttctaaaatc-gtgttacgtttttaccaaatcgtgacacgattctcttgtttgtatttttttcagttttctactctttt-gctgcataagt 8887918  T
Q  116 tgccttctgaactccaaattgtgatcaaaatacatataaaaa 157  Q
    || ||| |||||||||| ||||||||||| ||||||||||||    
T  8887917 tgacttgtgaactccaatttgtgatcaaactacatataaaaa 8887876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 36 - 184
Target Start/End: Complemental strand, 16178487 - 16178339
Alignment:
Q  36 gtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttcttta-gttttctgctctttttgctgcataagttgccttctgaactccaaat 134  Q
    ||||||||||||||||||||||| |||||||||| ||  |||||||||||||| ||||| || | || ||||||||||||||| ||| |||| || |||     
T  16178487 gtgtcacgtttttaccaaatcgttacacgttttcattatttgtattttctttaggttttttgtttttcttgctgcataagttgacttgtgaattctaaaa 16178388  T
Q  135 tgtgatcaaaatacatataaaaattacgtaatgacgagatgtcatcatgg 184  Q
    |||||||||| |||| |  | |||||| ||||||||||||||||||||||    
T  16178387 tgtgatcaaattaca-aagagaattacataatgacgagatgtcatcatgg 16178339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 16 - 157
Target Start/End: Original strand, 42369436 - 42369585
Alignment:
Q  16 attttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgc-----tct----ttttgc 106  Q
    |||||||| |||||||| | |||||||||||||||||||||||| |||| ||   ||| |||||||||||| |||||||| |     |||    ||||||    
T  42369436 attttggttttctaaaatc-gtgtcacgtttttaccaaatcgtggcacgattctcttctttgtattttcttcagttttcttcagttttctactcttttgc 42369534  T
Q  107 tgcataagttgccttctgaactccaaattgtgatcaaaatacatataaaaa 157  Q
    ||||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  42369535 tgcataagttgccttgtgaactccaatttgtgatcaaaatacatataaaaa 42369585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 52 - 181
Target Start/End: Original strand, 16791518 - 16791646
Alignment:
Q  52 aaatcgtgacacgttttctttccttgtattttctttagt-tttctgctctttttgctgcataagttgccttctgaactccaaattgtgatcaaaatacat 150  Q
    ||||||||||||| |||  ||| ||||||||||| |||  |||||||| || |||||||||||||||| || ||||||||||| |||||| ||| |||      
T  16791518 aaatcgtgacacgatttgcttctttgtattttctatagaatttctgcttttcttgctgcataagttgctttgtgaactccaaaatgtgataaaagtac-- 16791615  T
Q  151 ataaaaattacgtaatgacgagatgtcatca 181  Q
    |||||||||| |||||||| |||||||||||    
T  16791616 ataaaaattatgtaatgacaagatgtcatca 16791646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 90 - 174
Target Start/End: Complemental strand, 27266073 - 27265990
Alignment:
Q  90 ttttctgctctttttgctgcataagttgccttctgaactccaaattgtgatcaaaatacatataaaaattacgtaatgacgagat 174  Q
    ||||||||| || || ||||||||||||| || ||||||||||| |||||||||| ||||||| |||||||||||||||||||||    
T  27266073 ttttctgcttttcttactgcataagttgctttgtgaactccaaaatgtgatcaaattacatat-aaaattacgtaatgacgagat 27265990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 90 - 181
Target Start/End: Complemental strand, 12219163 - 12219073
Alignment:
Q  90 ttttctgctctttttgctgcataagttgccttctgaactccaaattgtgatcaaaatacatataaaaattacgtaatgacgagatgtcatca 181  Q
    ||||||| |||||||||||||||| | ||||| ||||||||||||| ||||||   |||| |  ||||||||||||||||||||||||||||    
T  12219163 ttttctgttctttttgctgcataaatggccttgtgaactccaaattatgatcagtttacaca-gaaaattacgtaatgacgagatgtcatca 12219073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 36 - 181
Target Start/End: Original strand, 9967059 - 9967204
Alignment:
Q  36 gtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttag-ttttctgctctttttgctgcataagttgccttctgaactccaaat 134  Q
    |||| ||||||| ||||||||||||||||||||| ||| ||| | |||||| || ||||||||| ||  |||||| |||||||| || | |||| ||||     
T  9967059 gtgttacgttttcaccaaatcgtgacacgttttccttctttgcactttcttcagtttttctgcttttcatgctgcttaagttgcattgtaaacttcaaaa 9967158  T
Q  135 tgtgatcaaaatacatataaaaattacgtaatgacgagatgtcatca 181  Q
    | |||| ||| ||||||| | |||||||||||||| ||| |||||||    
T  9967159 tatgataaaattacatat-acaattacgtaatgacaagaggtcatca 9967204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 53 - 133
Target Start/End: Complemental strand, 22630164 - 22630083
Alignment:
Q  53 aatcgtgacacgttttctttccttgtattttctttagtttt-ctgctctttttgctgcataagttgccttctgaactccaaa 133  Q
    ||||||||||||||||  ||| ||||||||||||  ||||| ||||| || |||||||||||||||| || |||||||||||    
T  22630164 aatcgtgacacgttttgcttctttgtattttcttctgtttttctgcttttcttgctgcataagttgctttgtgaactccaaa 22630083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 17876737 - 17876788
Alignment:
Q  4 atgtcgaagaatattttggtcttctaaaaactgtgtcacgtttttaccaaatc 56  Q
    ||||||||| || |||||||||||||||| | |||| ||||||||||||||||    
T  17876737 atgtcgaagcatgttttggtcttctaaaatc-gtgttacgtttttaccaaatc 17876788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 126; Significance: 8e-65; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 4 - 181
Target Start/End: Complemental strand, 17140904 - 17140729
Alignment:
Q  4 atgtcgaagaatattttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgctctttt 103  Q
    ||||||||| || ||||||||||  |||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  17140904 atgtcgaagcatgttttggtctttcaaaatct-tgtcacgtttttaccaaatcgtgacacgttttctttctttgtattttctttagttttctactctttt 17140806  T
Q  104 tgctgcataagttgccttctgaactccaaattgtgatcaaaatacatataaaaattacgtaatgacgagatgtcatca 181  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  17140805 tgctgcataagttgccttgtgaactccaaattgtgatcaaaatacatat-aaaattacgtaatgatgagatgtcatca 17140729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 4 - 181
Target Start/End: Original strand, 46985867 - 46986042
Alignment:
Q  4 atgtcgaagaatattttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgctctttt 103  Q
    ||||||||| || |||||||||||||||| | ||||||||||||||| |||||||||||||||||||||| |||||||||||| | ||||||||||||||    
T  46985867 atgtcgaagcatgttttggtcttctaaaatc-gtgtcacgtttttacaaaatcgtgacacgttttctttctttgtattttcttcaattttctgctctttt 46985965  T
Q  104 tgctgcataagttgccttctgaactccaaattgtgatcaaaatacatataaaaattacgtaatgacgagatgtcatca 181  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  46985966 tgctgcataagttgccttgtgaactccaaattgtgatcaaaatacatat-aaaattacgtaatgacgagatgttatca 46986042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 4 - 181
Target Start/End: Complemental strand, 54719520 - 54719345
Alignment:
Q  4 atgtcgaagaatattttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgctctttt 103  Q
    ||||||||| || ||||||||||| |||| | |||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||    
T  54719520 atgtcgaagcatgttttggtcttccaaaatc-gtgtcacgtttttaccaaatcgtgacacgtttgctttctttgtattttcttcagttttctgctctttt 54719422  T
Q  104 tgctgcataagttgccttctgaactccaaattgtgatcaaaatacatataaaaattacgtaatgacgagatgtcatca 181  Q
    |||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  54719421 tgctgcataagttgccttgtgaactctaaattgtgatcaaaatacatat-aaaattacgtaatgactagatgtcatca 54719345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 4 - 181
Target Start/End: Complemental strand, 52987880 - 52987703
Alignment:
Q  4 atgtcgaagaat-attttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagtttt-ctgctctt 101  Q
    ||||||||| || ||||||||||||||||| | ||||| |||||||||||||||||||||||||||||| | |||||||||||| |||||| ||||||||    
T  52987880 atgtcgaagcatgattttggtcttctaaaatc-gtgtctcgtttttaccaaatcgtgacacgttttctt-ctttgtattttcttcagtttttctgctctt 52987783  T
Q  102 tttgctgcataagttgccttctgaactccaaattgtgatcaaaatacatataaaaattacgtaatgacgagatgtcatca 181  Q
    ||||||||||| |||| ||| |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  52987782 tttgctgcatatgttgtcttttgaactccactttgtgatcaaaatacatataaaaattacgtaatgacgagatgtcatca 52987703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 36 - 181
Target Start/End: Original strand, 12561984 - 12562129
Alignment:
Q  36 gtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgctctttttgctgcataagttgccttctgaactccaaatt 135  Q
    ||||||||||||||||||||||||||||| |||| ||| |||||||||||| | |||||||||| ||||||||||||||||||||| |||||||||  ||    
T  12561984 gtgtcacgtttttaccaaatcgtgacacgatttccttctttgtattttcttcatttttctgctc-ttttgctgcataagttgccttgtgaactccacttt 12562082  T
Q  136 gtgatcaaaatacatat-aaaaattacgtaatgacgagatgtcatca 181  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||    
T  12562083 gtgatcaaaatacatataaaaaattacgtaatgacgagatgtcatca 12562129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 17 - 185
Target Start/End: Complemental strand, 46884413 - 46884246
Alignment:
Q  17 ttttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagtttt-ctgctctttttgctgcataagt 115  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||||||  ||| ||| |||||||| |||||| ||| ||||||||||||||||||    
T  46884413 ttttggtcttctaaaatc-gtgtcacgtttttaccaaatcgtgacacgttttgcttctttgcattttcttcagtttttctgttctttttgctgcataagt 46884315  T
Q  116 tgccttctgaactccaaattgtgatcaaaatacatataaaaattacgtaatgacgagatgtcatcatggg 185  Q
    |||||| ||||||||||| ||||||||   |||| |  ||||||||||||||||||||||||||||||||    
T  46884314 tgccttgtgaactccaaaatgtgatcagtttacaca-gaaaattacgtaatgacgagatgtcatcatggg 46884246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 40 - 180
Target Start/End: Original strand, 32288080 - 32288217
Alignment:
Q  40 cacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgctctttttgctgcataagttgccttctgaactccaaattgtga 139  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||| |||||| ||||||||||| ||||||||||||||| ||||||||||||| |||    
T  32288080 cacgtttttaccaaatcgtgacacgttttctttctttgtactttcttcagttttttgctctttttggtgcataagttgccttgtgaactccaaattatga 32288179  T
Q  140 tcaaaatacatataaaaattacgtaatgacgagatgtcatc 180  Q
    | ||||||||   ||||||||| ||||||| ||||||||||    
T  32288180 tgaaaataca---aaaaattacctaatgacaagatgtcatc 32288217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 52 - 181
Target Start/End: Original strand, 48064781 - 48064910
Alignment:
Q  52 aaatcgtgacacgttttctttccttgtattttctttagtttt-ctgctctttttgctgcataagttgccttctgaactccaaattgtgatcaaaatacat 150  Q
    |||||||| ||||||||||||  |||||||||||| |||||| |||||||||||||| ||||||||||||| |||||||||  |||||||||||||||||    
T  48064781 aaatcgtgtcacgttttctttt-ttgtattttcttcagtttttctgctctttttgctacataagttgccttgtgaactccactttgtgatcaaaatacat 48064879  T
Q  151 ataaaaattacgtaatgacgagatgtcatca 181  Q
    |||||||||||| ||||||||||||||||||    
T  48064880 ataaaaattacgcaatgacgagatgtcatca 48064910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 16 - 157
Target Start/End: Complemental strand, 11190000 - 11189861
Alignment:
Q  16 attttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgctctttttgctgcataagt 115  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||||| ||   ||| |||| ||||||| |||||||| ||||||| |||||||||||    
T  11190000 attttggtcttctaaaatc-gtgtcacgtttttaccaaatcgtgacacgattctcttctttgttttttcttcagttttctactctttt-gctgcataagt 11189903  T
Q  116 tgccttctgaactccaaattgtgatcaaaatacatataaaaa 157  Q
    |||||| |||||||||| ||||||||||||||||||||||||    
T  11189902 tgccttgtgaactccaatttgtgatcaaaatacatataaaaa 11189861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 16 - 157
Target Start/End: Complemental strand, 25584154 - 25584015
Alignment:
Q  16 attttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgctctttttgctgcataagt 115  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||||| ||   ||| |||||||||||| |||||||| ||||||| ||||||||| |    
T  25584154 attttggtcttctaaaatc-gtgtcacgtttttaccaaatcgtgacacgattctcttctttgtattttcttcagttttctactctttt-gctgcataatt 25584057  T
Q  116 tgccttctgaactccaaattgtgatcaaaatacatataaaaa 157  Q
    |||||| |||||||||| ||||||||||||||||||||||||    
T  25584056 tgccttgtgaactccaatttgtgatcaaaatacatataaaaa 25584015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 38 - 181
Target Start/End: Original strand, 28008800 - 28008944
Alignment:
Q  38 gtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagtttt-ctgctctttttgctgcataagttgccttctgaactccaaattg 136  Q
    ||||||||||||||||||| |||||||||||  ||  ||| |||||||| |||||| ||||| || ||||||||||||||||||| ||||||||||| ||    
T  28008800 gtcacgtttttaccaaatcatgacacgtttttcttttttgcattttcttcagtttttctgcttttcttgctgcataagttgccttgtgaactccaaaatg 28008899  T
Q  137 tgatcaaaatacatataaaaattacgtaatgacgagatgtcatca 181  Q
    |||||||| |||||| ||||||||||||||||| |||||||||||    
T  28008900 tgatcaaattacataaaaaaattacgtaatgacaagatgtcatca 28008944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 17 - 157
Target Start/End: Original strand, 12535805 - 12535943
Alignment:
Q  17 ttttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgctctttttgctgcataagtt 116  Q
    ||||||||||||||||  ||||||||||||||||||||||||| |||| ||   ||| |||||||||||| |||||||| ||||||| ||||||||||||    
T  12535805 ttttggtcttctaaaat-tgtgtcacgtttttaccaaatcgtggcacgattctcttctttgtattttcttcagttttctactctttt-gctgcataagtt 12535902  T
Q  117 gccttctgaactccaaattgtgatcaaaatacatataaaaa 157  Q
    || || |||||||||| ||||||||||||||||||||||||    
T  12535903 gcattgtgaactccaatttgtgatcaaaatacatataaaaa 12535943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 16 - 157
Target Start/End: Complemental strand, 2778188 - 2778049
Alignment:
Q  16 attttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgctctttttgctgcataagt 115  Q
    ||||||||||||||||| |  |||||||||||||||||||||||||||| ||   ||| |||||||||||| |||||||| ||||||| |||||||||||    
T  2778188 attttggtcttctaaaatca-tgtcacgtttttaccaaatcgtgacacgattctcttctttgtattttcttcagttttctactctttt-gctgcataagt 2778091  T
Q  116 tgccttctgaactccaaattgtgatcaaaatacatataaaaa 157  Q
    |||||| |||||||||  ||||||||||| ||||||||||||    
T  2778090 tgccttgtgaactccactttgtgatcaaattacatataaaaa 2778049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 16 - 157
Target Start/End: Complemental strand, 2873026 - 2872887
Alignment:
Q  16 attttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgctctttttgctgcataagt 115  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||||| ||   ||| |||||||||||| |||||||| ||| |||||||||||||||    
T  2873026 attttggtcttctaaaatc-gtgtcacgtttttaccaaatcgtgacacgattctcttctttgtattttcttcagttttctactc-ttttgctgcataagt 2872929  T
Q  116 tgccttctgaactccaaattgtgatcaaaatacatataaaaa 157  Q
    ||||||  ||||||||  || |||||||||||||||||||||    
T  2872928 tgccttgcgaactccactttatgatcaaaatacatataaaaa 2872887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 16 - 157
Target Start/End: Complemental strand, 24124960 - 24124821
Alignment:
Q  16 attttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgctctttttgctgcataagt 115  Q
    ||||| ||||||||||| | ||||||||||||||| |||||||| |||| ||   ||| |||||||||||| |||||||| ||||||| |||||||||||    
T  24124960 atttttgtcttctaaaatc-gtgtcacgtttttacaaaatcgtggcacgattctcttctttgtattttcttcagttttctactctttt-gctgcataagt 24124863  T
Q  116 tgccttctgaactccaaattgtgatcaaaatacatataaaaa 157  Q
    |||||| |||||||||| ||||||||||||||||||||||||    
T  24124862 tgccttgtgaactccaatttgtgatcaaaatacatataaaaa 24124821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 16 - 157
Target Start/End: Complemental strand, 30690197 - 30690058
Alignment:
Q  16 attttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgctctttttgctgcataagt 115  Q
    |||||||||||| |||| | ||||||||||||||||||||||||||||| ||   ||| |||||||||||| |||||||| ||||||| |||||||||||    
T  30690197 attttggtcttcgaaaatc-gtgtcacgtttttaccaaatcgtgacacgattctcttctttgtattttcttcagttttctactctttt-gctgcataagt 30690100  T
Q  116 tgccttctgaactccaaattgtgatcaaaatacatataaaaa 157  Q
    | |||| | |||||||| ||||||||||||||||||||||||    
T  30690099 ttccttgtaaactccaatttgtgatcaaaatacatataaaaa 30690058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 16 - 157
Target Start/End: Original strand, 49743652 - 49743791
Alignment:
Q  16 attttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgctctttttgctgcataagt 115  Q
    |||| |||||||||||| | ||||||||||||||||||||||||||||| ||   ||| |||||||||||| |||||||| ||||||| |||||||||||    
T  49743652 atttcggtcttctaaaatc-gtgtcacgtttttaccaaatcgtgacacgattctcttctttgtattttcttcagttttctactctttt-gctgcataagt 49743749  T
Q  116 tgccttctgaactccaaattgtgatcaaaatacatataaaaa 157  Q
    | |||| |||||||||| || |||||||||||||||||||||    
T  49743750 taccttgtgaactccaatttatgatcaaaatacatataaaaa 49743791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 16 - 157
Target Start/End: Complemental strand, 54723203 - 54723064
Alignment:
Q  16 attttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgctctttttgctgcataagt 115  Q
    |||||| |||||||||| | ||||||||||||||||||||||||||||| ||   ||| |||||||||||| |||||||| ||||||| |||||||||||    
T  54723203 attttgatcttctaaaatc-gtgtcacgtttttaccaaatcgtgacacgattctcttctttgtattttcttcagttttctactctttt-gctgcataagt 54723106  T
Q  116 tgccttctgaactccaaattgtgatcaaaatacatataaaaa 157  Q
    || ||| |||||||||| ||||||||||| ||||||||||||    
T  54723105 tgacttgtgaactccaatttgtgatcaaactacatataaaaa 54723064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 16 - 157
Target Start/End: Complemental strand, 2774966 - 2774827
Alignment:
Q  16 attttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgctctttttgctgcataagt 115  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||| | ||   | | |||||||||||| |||||||| ||||||| |||||||||||    
T  2774966 attttggtcttctaaaatc-gtgtcacgtttttaccaaatcgtgacatgattctctgctttgtattttcttcagttttctactctttt-gctgcataagt 2774869  T
Q  116 tgccttctgaactccaaattgtgatcaaaatacatataaaaa 157  Q
    |||||| |||||||||  ||||||||||| ||||||||||||    
T  2774868 tgccttgtgaactccactttgtgatcaaattacatataaaaa 2774827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 16 - 157
Target Start/End: Complemental strand, 43926297 - 43926158
Alignment:
Q  16 attttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgctctttttgctgcataagt 115  Q
    |||||| |||||||||| | ||||||||||||||||||||| ||||||| ||   ||| |||||||||||| |||||||| ||||||| |||||||||||    
T  43926297 attttgatcttctaaaatc-gtgtcacgtttttaccaaatcttgacacgattctcttctttgtattttcttcagttttctactctttt-gctgcataagt 43926200  T
Q  116 tgccttctgaactccaaattgtgatcaaaatacatataaaaa 157  Q
    || ||| |||||||||| ||||||||||| ||||||||||||    
T  43926199 tgtcttgtgaactccaatttgtgatcaaactacatataaaaa 43926158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 16 - 157
Target Start/End: Original strand, 50462282 - 50462421
Alignment:
Q  16 attttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgctctttttgctgcataagt 115  Q
    ||||||||||||||||| | |||||||||||||||||||| |||||||| ||   ||| |||||||||||| |||||||| ||||||| |||||||||||    
T  50462282 attttggtcttctaaaatc-gtgtcacgtttttaccaaattgtgacacgattctcttctttgtattttcttcagttttctactctttt-gctgcataagt 50462379  T
Q  116 tgccttctgaactccaaattgtgatcaaaatacatataaaaa 157  Q
    || ||| |||||||||| |||||| |||| ||||||||||||    
T  50462380 tgacttgtgaactccaatttgtgaacaaactacatataaaaa 50462421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 36 - 157
Target Start/End: Complemental strand, 24128218 - 24128098
Alignment:
Q  36 gtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgctctttttgctgcataagttgccttctgaactccaaatt 135  Q
    ||||||||||||||| |||||||| |||| ||    || |||||||||||| |||||||| ||||||| ||||||||||||||||| |||||||||| ||    
T  24128218 gtgtcacgtttttacaaaatcgtggcacgattctcgtctttgtattttcttcagttttctactctttt-gctgcataagttgccttgtgaactccaattt 24128120  T
Q  136 gtgatcaaaatacatataaaaa 157  Q
    ||||||||||||||||||||||    
T  24128119 gtgatcaaaatacatataaaaa 24128098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 17 - 179
Target Start/End: Original strand, 15196035 - 15196196
Alignment:
Q  17 ttttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgctcttt-ttgctgcataagt 115  Q
    ||||||||||| |||| | |||| | ||||||||| ||||| ||||||||| | ||| |||||||||||| ||||||    ||||| |||||||| ||||    
T  15196035 ttttggtcttccaaaatc-gtgttatgtttttaccgaatcgggacacgtttgcattctttgtattttcttcagtttttatgtctttcttgctgcacaagt 15196133  T
Q  116 tgccttctgaactccaaattgtgatcaaaatacatataaaaattacgtaatgacgagatgtcat 179  Q
    |||||| ||||||||||| |||||||||| ||||||  ||||||||||||||||||||||||||    
T  15196134 tgccttgtgaactccaaaatgtgatcaaattacata-gaaaattacgtaatgacgagatgtcat 15196196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 36 - 157
Target Start/End: Complemental strand, 7486014 - 7485894
Alignment:
Q  36 gtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgctctttttgctgcataagttgccttctgaactccaaatt 135  Q
    ||||||||||||||||||||||||||||| ||   ||| |||||||||||| |||||||| ||| |||||||||||||||| |||| |||||||||  ||    
T  7486014 gtgtcacgtttttaccaaatcgtgacacgattctcttctttgtattttcttcagttttctactc-ttttgctgcataagtttccttgtgaactccacttt 7485916  T
Q  136 gtgatcaaaatacatataaaaa 157  Q
    ||||| |||||| |||||||||    
T  7485915 gtgattaaaataaatataaaaa 7485894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 16 - 157
Target Start/End: Complemental strand, 45895842 - 45895693
Alignment:
Q  16 attttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgc-----tct----ttttgc 106  Q
    ||||| ||||||||||| | |||||||||||||||||||||||| |||| ||   ||| |||||||||||| |||||||| |     |||    ||||||    
T  45895842 atttttgtcttctaaaatc-gtgtcacgtttttaccaaatcgtggcacgattctcttctttgtattttcttcagttttcttcagttttctactcttttgc 45895744  T
Q  107 tgcataagttgccttctgaactccaaattgtgatcaaaatacatataaaaa 157  Q
    ||||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  45895743 tgcataagttgccttgtgaactccaatttgtgatcaaaatacatataaaaa 45895693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 75 - 181
Target Start/End: Original strand, 17040812 - 17040918
Alignment:
Q  75 ttgtattttctttagtttt-ctgctctttttgctgcataagttgccttctgaactccaaattgtgatcaaaatacatataaaaattacgtaatgacgaga 173  Q
    ||||||||||||||||||| | | | || ||| ||| |||||| |||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  17040812 ttgtattttctttagtttttcagtttttcttgttgcttaagtttccttgtgaactccaaaatgtgatcaaaatacatat-aaaattacgtaatgacgaga 17040910  T
Q  174 tgtcatca 181  Q
    ||||||||    
T  17040911 tgtcatca 17040918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 56 - 181
Target Start/End: Complemental strand, 11784188 - 11784063
Alignment:
Q  56 cgtgacacgttttctttccttgtattttctttag-ttttctgctctttttgctgcataagttgccttctgaactccaaattgtgatcaaaatacatataa 154  Q
    ||||||||||||||  || ||| ||||| || || ||||||||| || ||||||| ||||||||||| |||| ||||||||||||||||  |||||| ||    
T  11784188 cgtgacacgttttcaatctttgcattttgttcagcttttctgcttttcttgctgcttaagttgccttgtgaattccaaattgtgatcaatttacata-aa 11784090  T
Q  155 aaattacgtaatgacgagatgtcatca 181  Q
    | ||||||||||||| |||||||||||    
T  11784089 agattacgtaatgacaagatgtcatca 11784063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 36 - 181
Target Start/End: Complemental strand, 27091333 - 27091188
Alignment:
Q  36 gtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttt-tctgctctttttgctgcataagttgccttctgaactccaaat 134  Q
    ||||||||||||   |||||  |||||||||||  ||| ||||| ||| || ||||| ||| || || ||||| | ||||||  ||| |||||||||||     
T  27091333 gtgtcacgttttatgcaaattatgacacgtttttcttctttgtactttattcagtttatctacttttcttgctacttaagttatcttgtgaactccaaaa 27091234  T
Q  135 tgtgatcaaaatacatataaaaattacgtaatgacgagatgtcatca 181  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||    
T  27091233 tgtgatcaaaatacatat-aaaattacgtaatgacgagatgtcatca 27091188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 101 - 157
Target Start/End: Original strand, 8462467 - 8462523
Alignment:
Q  101 ttttgctgcataagttgccttctgaactccaaattgtgatcaaaatacatataaaaa 157  Q
    ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  8462467 ttttgctgcataagttgccttgtgaactccaatttgtgatcaaaatacatataaaaa 8462523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 52 - 181
Target Start/End: Original strand, 22417600 - 22417729
Alignment:
Q  52 aaatcgtgacacgttttctttccttgtattttctttagt-tttctgctctttttgctgcataagttgccttctgaactccaaattgtgatcaaaa-taca 149  Q
    ||||||||||||| |||  ||| |||||||||||  ||  |||||||| || |||||||||||||||| || ||||||||||| |||||| |||| |||     
T  22417600 aaatcgtgacacgatttgcttctttgtattttctacagaatttctgcttttcttgctgcataagttgctttgtgaactccaaaatgtgataaaaagtac- 22417698  T
Q  150 tataaaaattacgtaatgacgagatgtcatca 181  Q
     ||||||||||||||||||| |||||||||||    
T  22417699 -ataaaaattacgtaatgacaagatgtcatca 22417729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 101 - 157
Target Start/End: Original strand, 6445579 - 6445635
Alignment:
Q  101 ttttgctgcataagttgccttctgaactccaaattgtgatcaaaatacatataaaaa 157  Q
    ||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||    
T  6445579 ttttgctgcataagttgccttgtgaacttcaatttgtgatcaaaatacatataaaaa 6445635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 52 - 181
Target Start/End: Complemental strand, 22010798 - 22010669
Alignment:
Q  52 aaatcgtgacacgttttctttccttgtattttctttagt-tttctgctctttttgctgcataagttgccttctgaactccaaattgtgatcaaaa-taca 149  Q
    ||||||||||||| |||  ||| |||||||||||  | | |||||||| || ||||||||||||| || || ||||||||||| |||||| |||| ||||    
T  22010798 aaatcgtgacacgatttgcttctttgtattttctacattatttctgcttttcttgctgcataagtagctttgtgaactccaaaatgtgataaaaagtaca 22010699  T
Q  150 tataaaaattacgtaatgacgagatgtcatca 181  Q
    ||  |||||||||||||||| |||||||||||    
T  22010698 ta--aaaattacgtaatgacaagatgtcatca 22010669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 101 - 157
Target Start/End: Complemental strand, 28265083 - 28265027
Alignment:
Q  101 ttttgctgcataagttgccttctgaactccaaattgtgatcaaaatacatataaaaa 157  Q
    ||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||    
T  28265083 ttttgctgcataagttgccttgtgaacttcaatttgtgatcaaaatacatataaaaa 28265027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 91 - 181
Target Start/End: Original strand, 32367935 - 32368024
Alignment:
Q  91 tttctgctctttttgctgcataagttgccttctgaactccaaattgtgatcaaaa-tacatataaaaattacgtaatgacgagatgtcatca 181  Q
    |||||||| || |||||||||||||||| || ||||||||||| |||||| |||| |||  ||||||||||||||||||| |||||||||||    
T  32367935 tttctgcttttcttgctgcataagttgctttgtgaactccaaaatgtgataaaaagtac--ataaaaattacgtaatgacaagatgtcatca 32368024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 67
Target Start/End: Original strand, 30220759 - 30220790
Alignment:
Q  36 gtgtcacgtttttaccaaatcgtgacacgttt 67  Q
    ||||||||||||||||||||||||||||||||    
T  30220759 gtgtcacgtttttaccaaatcgtgacacgttt 30220790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 181
Target Start/End: Original strand, 3293825 - 3293854
Alignment:
Q  152 taaaaattacgtaatgacgagatgtcatca 181  Q
    ||||||||||||||||||||||||||||||    
T  3293825 taaaaattacgtaatgacgagatgtcatca 3293854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 36 - 64
Target Start/End: Original strand, 11784181 - 11784209
Alignment:
Q  36 gtgtcacgtttttaccaaatcgtgacacg 64  Q
    |||||||||||||||||||||||||||||    
T  11784181 gtgtcacgtttttaccaaatcgtgacacg 11784209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 24128258 - 24128207
Alignment:
Q  16 attttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgtttt 68  Q
    ||||| ||||||||||| | ||||||||||||||| |||||||| ||||||||    
T  24128258 atttttgtcttctaaaatc-gtgtcacgtttttacaaaatcgtgtcacgtttt 24128207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 125; Significance: 3e-64; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 17 - 181
Target Start/End: Complemental strand, 20593641 - 20593478
Alignment:
Q  17 ttttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgctctttttgctgcataagtt 116  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||||||| | |||| ||||||||| |||||||||||||||||||||||||||||    
T  20593641 ttttggtcttctaaaatc-gtgtcacgtttttaccaaatcgtgacacgttttcgtcccttctattttcttcagttttctgctctttttgctgcataagtt 20593543  T
Q  117 gccttctgaactccaaattgtgatcaaaatacatataaaaattacgtaatgacgagatgtcatca 181  Q
    | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  20593542 gtcttgtgaactccaaattgtgatcaaaatacatataaaaattacgtaatgacgagatttcatca 20593478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 17 - 181
Target Start/End: Original strand, 9133469 - 9133631
Alignment:
Q  17 ttttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagtttt-ctgctctttttgctgcataagt 115  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||||||||| | |||||||||||| |||||| ||||||||||||| ||||||||    
T  9133469 ttttggtcttctaaaatc-gtgtcacgtttttaccaaatcgtgacacgttttctt-ctttgtattttcttaagtttttctgctctttttgcggcataagt 9133566  T
Q  116 tgccttctgaactccaaattgtgatcaaaatacatataaaaattacgtaatgacgagatgtcatca 181  Q
    | |||| | |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  9133567 taccttgtaaactccaatttgtgatcaaaatacatat-aaaattacgtaatgacgagatgtcatca 9133631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 16 - 157
Target Start/End: Original strand, 37166897 - 37167036
Alignment:
Q  16 attttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgctctttttgctgcataagt 115  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||||| ||   ||| |||||||||||| |||||||| ||||||| |||||||||||    
T  37166897 attttggtcttctaaaatc-gtgtcacgtttttaccaaatcgtgacacgattctcttctttgtattttcttcagttttctactctttt-gctgcataagt 37166994  T
Q  116 tgccttctgaactccaaattgtgatcaaaatacatataaaaa 157  Q
    || ||| |||||||||| ||||||||||||||||||||||||    
T  37166995 tgtcttgtgaactccaatttgtgatcaaaatacatataaaaa 37167036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 16 - 157
Target Start/End: Original strand, 23225656 - 23225796
Alignment:
Q  16 attttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttc-tgctctttttgctgcataag 114  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||||| ||   ||| |||||||||||| ||||||| | ||||||| ||||||||||    
T  23225656 attttggtcttctaaaatc-gtgtcacgtttttaccaaatcgtgacacgattctcttctttgtattttcttcagttttcctactctttt-gctgcataag 23225753  T
Q  115 ttgccttctgaactccaaattgtgatcaaaatacatataaaaa 157  Q
    ||||||| |||||||||| ||||||||||||||||||||||||    
T  23225754 ttgccttgtgaactccaatttgtgatcaaaatacatataaaaa 23225796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 16 - 157
Target Start/End: Original strand, 23234809 - 23234949
Alignment:
Q  16 attttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttc-tgctctttttgctgcataag 114  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||||| ||   ||| |||||||||||| ||||||| | ||||||| ||||||||||    
T  23234809 attttggtcttctaaaatc-gtgtcacgtttttaccaaatcgtgacacgattctcttctttgtattttcttcagttttcctactctttt-gctgcataag 23234906  T
Q  115 ttgccttctgaactccaaattgtgatcaaaatacatataaaaa 157  Q
    ||||||| |||||||||| ||||||||||||||||||||||||    
T  23234907 ttgccttgtgaactccaatttgtgatcaaaatacatataaaaa 23234949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 16 - 157
Target Start/End: Original strand, 11951143 - 11951282
Alignment:
Q  16 attttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgctctttttgctgcataagt 115  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||||| |||  ||| |||||||||||| | |||||| ||||||| |||||||||||    
T  11951143 attttggtcttctaaaatc-gtgtcacgtttttaccaaatcgtgacacgattttcttctttgtattttcttcaattttctactctttt-gctgcataagt 11951240  T
Q  116 tgccttctgaactccaaattgtgatcaaaatacatataaaaa 157  Q
    | |||| ||||||| || ||||||||||||||||||||||||    
T  11951241 ttccttgtgaactcaaatttgtgatcaaaatacatataaaaa 11951282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 17 - 181
Target Start/End: Complemental strand, 9405641 - 9405478
Alignment:
Q  17 ttttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagtttt-ctgctctttttgctgcataagt 115  Q
    |||||||||||||||| | ||||||||||||| ||||||| |||||| ||||  ||| ||| ||||||||||||||| ||  ||||||||||||||||||    
T  9405641 ttttggtcttctaaaatc-gtgtcacgttttttccaaatcatgacacattttgcttctttgcattttctttagtttttctattctttttgctgcataagt 9405543  T
Q  116 tgccttctgaactccaaattgtgatcaaaatacatataaaaattacgtaatgacgagatgtcatca 181  Q
     ||||| ||||||||||||||||||||   |||| |  |||||||| |||||||||||||| ||||    
T  9405542 ggccttgtgaactccaaattgtgatcagtttaca-aagaaaattacataatgacgagatgttatca 9405478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 17 - 181
Target Start/End: Complemental strand, 10468507 - 10468344
Alignment:
Q  17 ttttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagtttt-ctgctctttttgctgcataagt 115  Q
    |||||||||||||||| | |||||||||||||||||||||   ||| |||||  ||| ||| |||||||| |||||| ||| ||||||||||||||||||    
T  10468507 ttttggtcttctaaaatc-gtgtcacgtttttaccaaatctcaacatgttttgcttctttgcattttcttcagtttttctgttctttttgctgcataagt 10468409  T
Q  116 tgccttctgaactccaaattgtgatcaaaatacatataaaaattacgtaatgacgagatgtcatca 181  Q
     ||||| |||||| |||||||||||||   |||| |  ||||||||||||||||||||||||||||    
T  10468408 ggccttgtgaacttcaaattgtgatcagtttacaca-gaaaattacgtaatgacgagatgtcatca 10468344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 4 - 157
Target Start/End: Complemental strand, 4861190 - 4861028
Alignment:
Q  4 atgtcgaagaat-attttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgc----- 97  Q
    |||||||||| | |||||||| |||||||| | |||||||||||||||||||||||| |||  ||   ||| |||||||||||| |||||||| |         
T  4861190 atgtcgaagattgattttggttttctaaaatc-gtgtcacgtttttaccaaatcgtggcacaattctcttctttgtattttcttcagttttcttcagttt 4861092  T
Q  98 tct----ttttgctgcataagttgccttctgaactccaaattgtgatcaaaatacatataaaaa 157  Q
    |||    ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  4861091 tctactcttttgctgcataagttgccttgtgaactccaatttgtgatcaaaatacatataaaaa 4861028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 52 - 181
Target Start/End: Original strand, 26145291 - 26145420
Alignment:
Q  52 aaatcgtgacacgttttctttccttgtattttctttagt-tttctgctctttttgctgcataagttgccttctgaactccaaattgtgatcaaaa-taca 149  Q
    ||||||||||||| |||  ||| |||||||||||  ||  |||||||| || |||||||||||||||| || ||||||||||| |||||| |||| |||     
T  26145291 aaatcgtgacacgatttgcttctttgtattttctgcagaatttctgcttttcttgctgcataagttgctttgtgaactccaaaatgtgataaaaagtac- 26145389  T
Q  150 tataaaaattacgtaatgacgagatgtcatca 181  Q
     ||||||||||||||||||| |||||||||||    
T  26145390 -ataaaaattacgtaatgacaagatgtcatca 26145420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 52 - 181
Target Start/End: Original strand, 26136911 - 26137040
Alignment:
Q  52 aaatcgtgacacgttttctttccttgtattttctttagt-tttctgctctttttgctgcataagttgccttctgaactccaaattgtgatcaaaa-taca 149  Q
    ||||||||||||| |||  ||| |||||||||||  ||  |||||||| || |||||||||||||||  || ||||||||||| |||||| |||| |||     
T  26136911 aaatcgtgacacgatttgcttctttgtattttctgcagaatttctgcttttcttgctgcataagttggtttgtgaactccaaaatgtgataaaaagtac- 26137009  T
Q  150 tataaaaattacgtaatgacgagatgtcatca 181  Q
     |||||| |||||||||||| |||||||||||    
T  26137010 -ataaaatttacgtaatgacaagatgtcatca 26137040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 182
Target Start/End: Original strand, 22612258 - 22612416
Alignment:
Q  17 ttttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttag-ttttctgctctttttgctgcataagt 115  Q
    |||||||||||| ||| | |||||||||||||  ||||||||||||||||||  ||| ||| |||||| | || ||||||  ||||||||||||||||      
T  22612258 ttttggtcttctcaaatc-gtgtcacgtttttggcaaatcgtgacacgttttgcttctttgcattttcctcagtttttctcatctttttgctgcataa-- 22612354  T
Q  116 tgccttctgaactccaaattgtgatcaaaatacatataaaaattacgtaatgacgagatgtcatcat 182  Q
        || |||||||||| ||||| |||   |||| || ||||||||||||| |||||||||||||||    
T  22612355 ----ttgtgaactccaatttgtgctcagtttacacat-aaaattacgtaattacgagatgtcatcat 22612416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 146 - 182
Target Start/End: Complemental strand, 219135 - 219099
Alignment:
Q  146 tacatataaaaattacgtaatgacgagatgtcatcat 182  Q
    |||||||||||||||||||||||||||||||||||||    
T  219135 tacatataaaaattacgtaatgacgagatgtcatcat 219099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 121; Significance: 8e-62; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 4 - 181
Target Start/End: Original strand, 3669 - 3847
Alignment:
Q  4 atgtcgaagaatattttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgtttt--ctttccttgtattttctttagttttctgctctt 101  Q
    ||||||||| || ||||||| ||| |||| | |||||||||||||||||||||||||||||||||  ||||| |||||||||||| ||||||||||||||    
T  3669 atgtcgaagcatgttttggttttccaaaatc-gtgtcacgtttttaccaaatcgtgacacgtttttgctttctttgtattttcttcagttttctgctctt 3767  T
Q  102 tttgctgcataagttgccttctgaactccaaattgtgatcaaaatacatataaaaattacgtaatgacgagatgtcatca 181  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  3768 tttgctgcataagttgccttgtgaactccaaattgtgatcaaaatacataaaaaaattacgtaatgactagatgtcatca 3847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 121; Significance: 8e-62; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 16 - 184
Target Start/End: Complemental strand, 23593476 - 23593310
Alignment:
Q  16 attttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgctctttttgctgcataagt 115  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||||| | |||| | |||||||||||| ||||||||||||||||||||||||||||    
T  23593476 attttggtcttctaaaatc-gtgtcacgtttttaccaaatcgtgacacgatctctt-ctttgtattttcttcagttttctgctctttttgctgcataagt 23593379  T
Q  116 tgccttctgaactccaaattgtgatcaaaatacatataaaaattacgtaatgacgagatgtcatcatgg 184  Q
    |||||| |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23593378 tgccttgtgaactccactttgtgatcaaaatacatataaaaattacgtaatgacgagatgtcatcatgg 23593310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 4 - 181
Target Start/End: Complemental strand, 8911037 - 8910862
Alignment:
Q  4 atgtcgaagaatattttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgctctttt 103  Q
    ||||||||| || |||||||||||||||| | |||||||||||| ||||||||||||||||||||||||| |||||||||||| | ||||||||||||||    
T  8911037 atgtcgaagcatgttttggtcttctaaaatc-gtgtcacgttttcaccaaatcgtgacacgttttctttctttgtattttcttcatttttctgctctttt 8910939  T
Q  104 tgctgcataagttgccttctgaactccaaattgtgatcaaaatacatataaaaattacgtaatgacgagatgtcatca 181  Q
    || |||||||||| |||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  8910938 tgatgcataagtttccttgtgaactccaaattgtgatcaaaatacatat-aaaattatgtaatgacgagatgtcatca 8910862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 4 - 181
Target Start/End: Complemental strand, 31284057 - 31283880
Alignment:
Q  4 atgtcgaagaat-attttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagtttt-ctgctctt 101  Q
    ||||||||| || ||||||||||||||||| | |||||||||||||||||||||||||||||||||||| | |||||||||||| |||||| ||||||||    
T  31284057 atgtcgaagcatgattttggtcttctaaaatc-gtgtcacgtttttaccaaatcgtgacacgttttctt-ctttgtattttcttcagtttttctgctctt 31283960  T
Q  102 tttgctgcataagttgccttctgaactccaaattgtgatcaaaatacatataaaaattacgtaatgacgagatgtcatca 181  Q
    |||||||||||||||| ||| |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  31283959 tttgctgcataagttgtcttgtgaactccactttgtgatcaaaatacatataaaaattacgtaatgacgagatgtcatca 31283880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 16 - 157
Target Start/End: Complemental strand, 16953171 - 16953032
Alignment:
Q  16 attttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgctctttttgctgcataagt 115  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||||| ||   ||| |||||||||||| |||||||| ||||||| |||||||||||    
T  16953171 attttggtcttctaaaatc-gtgtcacgtttttaccaaatcgtgacacgattctcttctttgtattttcttcagttttctactctttt-gctgcataagt 16953074  T
Q  116 tgccttctgaactccaaattgtgatcaaaatacatataaaaa 157  Q
    |||||| |||||||||| ||||||||||| ||||||||||||    
T  16953073 tgccttgtgaactccaatttgtgatcaaactacatataaaaa 16953032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 17 - 181
Target Start/End: Complemental strand, 33419006 - 33418844
Alignment:
Q  17 ttttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagtttt-ctgctctttttgctgcataagt 115  Q
    |||||||||||||||| | ||||||||||| | |||||||||||||||||||||| | ||| |||||||| |||||| |||||||||||||||||||||     
T  33419006 ttttggtcttctaaaatc-gtgtcacgtttgttccaaatcgtgacacgttttctt-ctttgcattttcttcagttttgctgctctttttgctgcataaga 33418909  T
Q  116 tgccttctgaactccaaattgtgatcaaaatacatataaaaattacgtaatgacgagatgtcatca 181  Q
    |||| | |||||||||| ||||||||||||||||||| ||||| | |||||||| |||||||||||    
T  33418908 tgccctgtgaactccaatttgtgatcaaaatacatat-aaaatcatgtaatgactagatgtcatca 33418844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 17 - 181
Target Start/End: Original strand, 21280514 - 21280677
Alignment:
Q  17 ttttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagtttt-ctgctctttttgctgcataagt 115  Q
    |||||||||||||||| | |||| |||||||   ||||||||||||||||||  ||  |||||||||||| |||||| ||||| || ||||||| |||||    
T  21280514 ttttggtcttctaaaatc-gtgttacgttttcttcaaatcgtgacacgttttacttatttgtattttcttcagtttttctgcttttcttgctgcttaagt 21280612  T
Q  116 tgccttctgaactccaaattgtgatcaaaatacatataaaaattacgtaatgacgagatgtcatca 181  Q
    |||||| ||||||||||| ||||||||||||||||||||||| || |||||||| |||||||||||    
T  21280613 tgccttgtgaactccaaaatgtgatcaaaatacatataaaaa-taagtaatgacaagatgtcatca 21280677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 36 - 181
Target Start/End: Original strand, 10498978 - 10499113
Alignment:
Q  36 gtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgctctttttgctgcataagttgccttctgaactccaaatt 135  Q
    |||||||||||||||||||||||| |||| |||| ||| |||||||||          ||||||||||| |||||||||||| ||| |||||||||  ||    
T  10498978 gtgtcacgtttttaccaaatcgtggcacgatttccttctttgtatttt----------ctgctctttttactgcataagttgtcttgtgaactccatttt 10499067  T
Q  136 gtgatcaaaatacatataaaaattacgtaatgacgagatgtcatca 181  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||    
T  10499068 gtgattaaaatacatataaaaattacgtaatgacgagatgtcatca 10499113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 53 - 181
Target Start/End: Complemental strand, 13196186 - 13196058
Alignment:
Q  53 aatcgtgacacgttttctttccttgtattttctttagtttt-ctgctctttttgctgcataagttgccttctgaactccaaattgtgatcaaaatacata 151  Q
    ||||||||||||||||  ||| || ||||||||| |||||| ||||| || ||||||||||||||| ||| ||||||||||| |||||||||||||||||    
T  13196186 aatcgtgacacgttttgcttctttttattttcttcagtttttctgcttttcttgctgcataagttgtcttgtgaactccaaaatgtgatcaaaatacata 13196087  T
Q  152 taaaaattacgtaatgacgagatgtcatca 181  Q
    | ||||||| ||||||||||||||||||||    
T  13196086 t-aaaattatgtaatgacgagatgtcatca 13196058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 80 - 181
Target Start/End: Complemental strand, 17930330 - 17930230
Alignment:
Q  80 ttttctttagttttctgctctttttgctgcataagttgccttctgaactccaaattgtgatcaaaatacatataaaaattacgtaatgacgagatgtcat 179  Q
    ||||||| ||||||||||| || ||||||| ||||||||||| ||||||||||| |||||| ||||||||||| ||||||| ||||||||||||||||||    
T  17930330 ttttcttcagttttctgcttttcttgctgcttaagttgccttgtgaactccaaaatgtgatgaaaatacatat-aaaattatgtaatgacgagatgtcat 17930232  T
Q  180 ca 181  Q
    ||    
T  17930231 ca 17930230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 53 - 181
Target Start/End: Complemental strand, 2559927 - 2559798
Alignment:
Q  53 aatcgtgacacgttttctttccttgtattttctttagttttct--gctctttttgctgcataagttgccttctgaactccaaattgtgatcaaaatacat 150  Q
    ||||||||||||||||  ||| |||||||||||| |||||| |  ||| || ||||||||||||||||||| |||| |||||| |||||||||| |||||    
T  2559927 aatcgtgacacgttttgcttctttgtattttcttcagttttttttgcttttcttgctgcataagttgccttgtgaaatccaaaatgtgatcaaattacat 2559828  T
Q  151 ataaaaattacgtaatgacgagatgtcatca 181  Q
    || ||||||| |||||||| |||||||||||    
T  2559827 at-aaaattatgtaatgacaagatgtcatca 2559798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 101 - 157
Target Start/End: Original strand, 17895435 - 17895491
Alignment:
Q  101 ttttgctgcataagttgccttctgaactccaaattgtgatcaaaatacatataaaaa 157  Q
    ||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||    
T  17895435 ttttgctgcataagttgccttgtgaacttcaatttgtgatcaaaatacatataaaaa 17895491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 52 - 181
Target Start/End: Original strand, 23621086 - 23621215
Alignment:
Q  52 aaatcgtgacacgttttctttccttgtattttctttagt-tttctgctctttttgctgcataagttgccttctgaactccaaattgtgatcaaaatacat 150  Q
    ||||||||||||| |||  ||| |||||||||||  ||  |||||||| || |||||||||||||||| || ||||||||||| || ||| ||||   |     
T  23621086 aaatcgtgacacgatttgcttctttgtattttctacagaatttctgcttttcttgctgcataagttgctttgtgaactccaaaatgcgat-aaaacgtac 23621184  T
Q  151 ataaaaattacgtaatgacgagatgtcatca 181  Q
    ||||||||||||||||||| |||||||||||    
T  23621185 ataaaaattacgtaatgacaagatgtcatca 23621215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 110; Significance: 3e-55; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 16 - 181
Target Start/End: Complemental strand, 19475381 - 19475218
Alignment:
Q  16 attttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgctctttttgctgcataagt 115  Q
    ||||||||||||||||| | |||||||||||||||||||| |||||||| | | |||| |||||||||||| |||||||||||||||||| |||||||||    
T  19475381 attttggtcttctaaaatc-gtgtcacgtttttaccaaattgtgacacgatct-tttctttgtattttcttcagttttctgctctttttgttgcataagt 19475284  T
Q  116 tgccttctgaactccaaattgtgatcaaaatacatataaaaattacgtaatgacgagatgtcatca 181  Q
    |||||| |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  19475283 tgccttgtgaactccactttgtgatcaaaatacatataaaaattacgtaatgacgagatgtcatca 19475218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 37 - 179
Target Start/End: Complemental strand, 13941922 - 13941780
Alignment:
Q  37 tgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgctctttttgctgcataagttgccttctgaactccaaattg 136  Q
    |||||| ||| | ||||||||||||||| |||||||| ||||||||| || | |||||| ||||||||||||||||||||||||| |||||||||  |||    
T  13941922 tgtcacatttattccaaatcgtgacacgatttctttctttgtattttattcatttttctactctttttgctgcataagttgccttgtgaactccactttg 13941823  T
Q  137 tgatcaaaatacatataaaaattacgtaatgacgagatgtcat 179  Q
    |||||||||||||||||||| ||||||||||| ||||||||||    
T  13941822 tgatcaaaatacatataaaagttacgtaatgatgagatgtcat 13941780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 16 - 157
Target Start/End: Original strand, 11188662 - 11188801
Alignment:
Q  16 attttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgctctttttgctgcataagt 115  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||||| ||   ||| |||||||||||| |||||||| ||||||| |||||||||||    
T  11188662 attttggtcttctaaaatc-gtgtcacgtttttaccaaatcgtgacacgattctcttctttgtattttcttcagttttctactctttt-gctgcataagt 11188759  T
Q  116 tgccttctgaactccaaattgtgatcaaaatacatataaaaa 157  Q
    |||||| |||||||||| ||||||||||| ||||||||||||    
T  11188760 tgccttgtgaactccaatttgtgatcaaactacatataaaaa 11188801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 17 - 181
Target Start/End: Original strand, 11126442 - 11126605
Alignment:
Q  17 ttttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagtttt-ctgctctttttgctgcataagt 115  Q
    |||||||||||| ||| | ||||||| ||||   ||||||||||||||||||  ||| |||||||||||| |||||| ||||| || ||||||| |||||    
T  11126442 ttttggtcttctcaaatc-gtgtcacattttctacaaatcgtgacacgttttgcttctttgtattttcttcagtttttctgcttttcttgctgcttaagt 11126540  T
Q  116 tgccttctgaactccaaattgtgatcaaaatacatataaaaattacgtaatgacgagatgtcatca 181  Q
    |||||| |||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  11126541 tgccttgtgaattccaaaatgtgatcaaaatacatat-aaaattacgtaatgacgagatgtcatca 11126605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 16 - 157
Target Start/End: Original strand, 11730081 - 11730220
Alignment:
Q  16 attttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgctctttttgctgcataagt 115  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||||| ||   ||| |||||||||||| |||||||| ||||||| || ||||||||    
T  11730081 attttggtcttctaaaatc-gtgtcacgtttttaccaaatcgtgacacgattctcttctttgtattttcttcagttttctactctttt-gcagcataagt 11730178  T
Q  116 tgccttctgaactccaaattgtgatcaaaatacatataaaaa 157  Q
    |||||| |||||||||  ||||||||||||||||||||||||    
T  11730179 tgccttgtgaactccactttgtgatcaaaatacatataaaaa 11730220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 16 - 157
Target Start/End: Complemental strand, 28229973 - 28229834
Alignment:
Q  16 attttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgctctttttgctgcataagt 115  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||||| ||   ||| |||||||||||| |||||||| ||||||| || ||||||||    
T  28229973 attttggtcttctaaaatc-gtgtcacgtttttaccaaatcgtgacacgattctcttctttgtattttcttcagttttctactctttt-gcagcataagt 28229876  T
Q  116 tgccttctgaactccaaattgtgatcaaaatacatataaaaa 157  Q
    |||||| |||||||||  ||||||||||||||||||||||||    
T  28229875 tgccttgtgaactccactttgtgatcaaaatacatataaaaa 28229834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 16 - 157
Target Start/End: Complemental strand, 30654822 - 30654683
Alignment:
Q  16 attttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgctctttttgctgcataagt 115  Q
    |||||||| |||||||| | ||||||| |||||| ||||||||| |||| ||   ||| |||||||||||| |||||||| ||||||| |||||||||||    
T  30654822 attttggttttctaaaatc-gtgtcacatttttatcaaatcgtggcacgattctcttctttgtattttcttcagttttctactctttt-gctgcataagt 30654725  T
Q  116 tgccttctgaactccaaattgtgatcaaaatacatataaaaa 157  Q
    |||||| |||||||||| ||||||||||||||||||||||||    
T  30654724 tgccttgtgaactccaatttgtgatcaaaatacatataaaaa 30654683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 90 - 181
Target Start/End: Complemental strand, 4511804 - 4511714
Alignment:
Q  90 ttttctgctctttttgctgcataagttgccttctgaactccaaattgtgatcaaaatacatataaaaattacgtaatgacgagatgtcatca 181  Q
    ||||||||||||||||||||||||| | |||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  4511804 ttttctgctctttttgctgcataagattccttgtgaactccaatttgtgatcaaaatacatat-aaaattacgtaatgacgagatgtcatca 4511714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 17 - 179
Target Start/End: Original strand, 26898616 - 26898776
Alignment:
Q  17 ttttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagtttt-ctgctctttttgctgcataagt 115  Q
    |||||||||||||||| | |||||||||||||| ||||||||||||||||| ||| | ||| |||||||| |||||| ||| ||||||||||||||||||    
T  26898616 ttttggtcttctaaaatc-gtgtcacgtttttagcaaatcgtgacacgtttgctt-ctttgcattttcttcagtttttctgttctttttgctgcataagt 26898713  T
Q  116 tgccttctgaactccaaattgtgatcaaaatacatataaaaattacgtaatgacgagatgtcat 179  Q
     ||||| ||||||||||||||||||||   |||| |  |||||||| |||||| ||||||||||    
T  26898714 ggccttgtgaactccaaattgtgatcagtttacaca-gaaaattacataatgatgagatgtcat 26898776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 16 - 157
Target Start/End: Complemental strand, 2378608 - 2378469
Alignment:
Q  16 attttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgctctttttgctgcataagt 115  Q
    |||||| |||||||||| | |||||||||||||||||||| |||||||| ||   ||| |||||||||||| ||||| || ||||||| |||||||||||    
T  2378608 attttgatcttctaaaatc-gtgtcacgtttttaccaaattgtgacacgattctcttctttgtattttcttcagtttcctactctttt-gctgcataagt 2378511  T
Q  116 tgccttctgaactccaaattgtgatcaaaatacatataaaaa 157  Q
    |||||| ||||||||||  |||||||||| ||||||||||||    
T  2378510 tgccttgtgaactccaatatgtgatcaaactacatataaaaa 2378469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 36 - 157
Target Start/End: Complemental strand, 15543369 - 15543249
Alignment:
Q  36 gtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgctctttttgctgcataagttgccttctgaactccaaatt 135  Q
    ||||||||||||||||||||||||||||| ||   ||| |||||||||||| |||||||| ||| ||||| | |||| |||||||| |||||||||| ||    
T  15543369 gtgtcacgtttttaccaaatcgtgacacgattctcttctttgtattttcttcagttttctactc-ttttgtttcataggttgccttgtgaactccaattt 15543271  T
Q  136 gtgatcaaaatacatataaaaa 157  Q
    ||||| ||||||||||||||||    
T  15543270 gtgatgaaaatacatataaaaa 15543249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 36 - 181
Target Start/End: Original strand, 22561890 - 22562034
Alignment:
Q  36 gtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttag-ttttctgctctttttgctgcataagttgccttctgaactccaaat 134  Q
    ||||||| ||||| |  |||||||||||||||||| || ||| |||||||| || |||||| || || ||||||| ||||||||||| |||| ||||||     
T  22561890 gtgtcacatttttgcagaatcgtgacacgttttctatctttgcattttcttcagtttttctacttttcttgctgcttaagttgccttgtgaaatccaaaa 22561989  T
Q  135 tgtgatcaaaatacatataaaaattacgtaatgacgagatgtcatca 181  Q
    |||||| ||| ||||||| |||||||||||||||||||||| |||||    
T  22561990 tgtgat-aaattacatat-aaaattacgtaatgacgagatgccatca 22562034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 17 - 181
Target Start/End: Complemental strand, 31880300 - 31880140
Alignment:
Q  17 ttttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgctctttttgc-tgcataagt 115  Q
    |||||||||||||||| | |||||| ||||||||||||||||||||||||||||||| |||||||||  ||  | ||| | | ||| ||| |   |||||    
T  31880300 ttttggtcttctaaaatc-gtgtcatgtttttaccaaatcgtgacacgttttctttctttgtattttaatt--tcttcag-tttttctgcttttctaagt 31880205  T
Q  116 tgccttctgaactccaaattgtgatcaaaatacatataaaaattacgtaatgacgagatgtcatca 181  Q
    ||| || ||||||||||| |||||||||| ||||||  ||||||||||||||||||||||||||||    
T  31880204 tgcgttgtgaactccaaaatgtgatcaaattacata-gaaaattacgtaatgacgagatgtcatca 31880140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 16 - 113
Target Start/End: Complemental strand, 11401635 - 11401540
Alignment:
Q  16 attttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgctctttttgctgcataa 113  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||||| ||   ||| |||||||||||| |||||||| ||| |||||||||||||    
T  11401635 attttggtcttctaaaatc-gtgtcacgtttttaccaaatcgtgacacgattctcttctttgtattttcttcagttttctactc-ttttgctgcataa 11401540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 157
Target Start/End: Original strand, 26943180 - 26943311
Alignment:
Q  16 attttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgctctttttgctgcataagt 115  Q
    ||||||||||||||||| | |||||||||||||||||||||||       | |||| | |||||||||||| | |||||  ||||||| || ||||||||    
T  26943180 attttggtcttctaaaatc-gtgtcacgtttttaccaaatcgt-------tctctt-ctttgtattttcttcacttttccactctttt-gcagcataagt 26943269  T
Q  116 tgccttctgaactccaaattgtgatcaaaatacatataaaaa 157  Q
    |||||| |||||||||  ||||||||||||||||||||||||    
T  26943270 tgccttgtgaactccactttgtgatcaaaatacatataaaaa 26943311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 181
Target Start/End: Complemental strand, 24399523 - 24399395
Alignment:
Q  53 aatcgtgacacgttttctttccttgtattttctttagt-tttctgctctttttgctgcataagttgccttctgaactccaaattgtgatcaaaa-tacat 150  Q
    |||||||||||| |||  ||| |||||||||||  ||  |||||||| || | |||||| ||||||| || |||||| |||| |||||| |||| |||||    
T  24399523 aatcgtgacacgatttgcttctttgtattttctacagaatttctgcttttctcgctgcacaagttgctttgtgaactgcaaaatgtgataaaaagtacat 24399424  T
Q  151 ataaaaattacgtaatgacgagatgtcatca 181  Q
    |  ||||||||||||||||||||||||||||    
T  24399423 a--aaaattacgtaatgacgagatgtcatca 24399395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 103 - 181
Target Start/End: Original strand, 18856856 - 18856933
Alignment:
Q  103 ttgctgcataagttgccttctgaactccaaattgtgatcaaaa-tacatataaaaattacgtaatgacgagatgtcatca 181  Q
    ||||| |||||||||| || ||||||||||| |||||| |||| ||||||  ||||||||||||||||||||| ||||||    
T  18856856 ttgctacataagttgctttgtgaactccaaaatgtgataaaaagtacata--aaaattacgtaatgacgagatttcatca 18856933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 115 - 157
Target Start/End: Original strand, 3597506 - 3597548
Alignment:
Q  115 ttgccttctgaactccaaattgtgatcaaaatacatataaaaa 157  Q
    ||||||| |||||||||| |||| |||||||||||||||||||    
T  3597506 ttgccttgtgaactccaatttgtaatcaaaatacatataaaaa 3597548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 151 - 181
Target Start/End: Complemental strand, 24409556 - 24409526
Alignment:
Q  151 ataaaaattacgtaatgacgagatgtcatca 181  Q
    |||||||||||||||||||||||||||||||    
T  24409556 ataaaaattacgtaatgacgagatgtcatca 24409526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 106; Significance: 7e-53; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 4 - 182
Target Start/End: Original strand, 26908113 - 26908291
Alignment:
Q  4 atgtcgaagaatattttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgtttt--ctttccttgtattttctttagttttctgctctt 101  Q
    ||||||||| || ||||||| |||||||| | |||||||||||||||||||||||||||||||||  ||||| |||||||||||| | ||||||| ||||    
T  26908113 atgtcgaagcatgttttggttttctaaaatc-gtgtcacgtttttaccaaatcgtgacacgtttttgctttctttgtattttcttcaattttctgttctt 26908211  T
Q  102 tttgctgcataagttgccttctgaactccaaattgtgatcaaaatacatataaaaattacgtaatgacgagatgtcatcat 182  Q
    |||||||||||||||| ||| ||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||    
T  26908212 tttgctgcataagttgtcttgtgaactccaaattatgatcaaaatacata-aaaaattacgtaatgactagatgtcatcat 26908291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 17 - 181
Target Start/End: Complemental strand, 40582625 - 40582463
Alignment:
Q  17 ttttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgctctttttgctgcataagtt 116  Q
    ||||||||||| |||| | |||||||||||||||||||||  ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  40582625 ttttggtcttccaaaatc-gtgtcacgtttttaccaaatctagacacgttttctttctttgtattttcttcagttttctgctctttttgctgcataagtt 40582527  T
Q  117 gccttctgaactccaaattgtgatcaaaatacatataaaaattacgtaatgacgagatgtcatca 181  Q
    ||||| ||||||||||||| ||||||||||  |||| |||||||||||||||| | |||||||||    
T  40582526 gccttgtgaactccaaattatgatcaaaatgaatat-aaaattacgtaatgacaatatgtcatca 40582463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 36 - 181
Target Start/End: Original strand, 12059256 - 12059401
Alignment:
Q  36 gtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgctctttttgctgcataagttgccttctgaactccaaatt 135  Q
    |||||| |||| |||||||| |||||||| |||  ||| |||||||||||| | |||||||||||||||| ||||||||||||||| |||||||||  ||    
T  12059256 gtgtcatgtttgtaccaaattgtgacacgattttcttctttgtattttcttcatttttctgctctttttgttgcataagttgccttgtgaactccacttt 12059355  T
Q  136 gtgatcaaaatacatataaaaattacgtaatgacgagatgtcatca 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  12059356 gtgatcaaaatacatataaaaattacgtaatgacgagatgtcatca 12059401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 16 - 157
Target Start/End: Original strand, 41307272 - 41307411
Alignment:
Q  16 attttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgctctttttgctgcataagt 115  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||||| ||   ||| ||||||||||||||||||||| ||||||| |||||||||||    
T  41307272 attttggtcttctaaaatc-gtgtcacgtttttaccaaatcgtgacacgattctcttctttgtattttctttagttttctactctttt-gctgcataagt 41307369  T
Q  116 tgccttctgaactccaaattgtgatcaaaatacatataaaaa 157  Q
    |||||| ||| |||||| ||||||||||||||||||||||||    
T  41307370 tgccttgtgagctccaatttgtgatcaaaatacatataaaaa 41307411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 53 - 181
Target Start/End: Complemental strand, 23043527 - 23043399
Alignment:
Q  53 aatcgtgacacgttttctttccttgtattttctttagtttt-ctgctctttttgctgcataagttgccttctgaactccaaattgtgatcaaaatacata 151  Q
    ||||||||||||||||  ||| ||| |||||||| |||||| |||||||||||||||||||||||||| | |||||||||| |||| | |||||||||||    
T  23043527 aatcgtgacacgttttgcttctttgcattttcttcagttttactgctctttttgctgcataagttgccctgtgaactccaatttgtaaacaaaatacata 23043428  T
Q  152 taaaaattacgtaatgacgagatgtcatca 181  Q
    | ||||||||||||||||||||||||||||    
T  23043427 t-aaaattacgtaatgacgagatgtcatca 23043399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 16 - 157
Target Start/End: Original strand, 26753447 - 26753586
Alignment:
Q  16 attttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgctctttttgctgcataagt 115  Q
    |||||||||||||| || | |||||||||||||| |||||||||||||| ||   ||| |||||||||||| |||||||| ||||||| |||||||||||    
T  26753447 attttggtcttctacaatc-gtgtcacgtttttatcaaatcgtgacacgattctcttctttgtattttcttcagttttctactctttt-gctgcataagt 26753544  T
Q  116 tgccttctgaactccaaattgtgatcaaaatacatataaaaa 157  Q
    |  ||| |||||||||| ||||||||||||||||||||||||    
T  26753545 taacttgtgaactccaatttgtgatcaaaatacatataaaaa 26753586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 61 - 181
Target Start/End: Complemental strand, 26292205 - 26292086
Alignment:
Q  61 cacgttttctttccttgtattttctttagtttt-ctgctctttttgctgcataagttgccttctgaactccaaattgtgatcaaaatacatataaaaatt 159  Q
    ||||||||||||| |||||||||||| |||||| ||||| || ||||||||||||||||||| ||||||||||| |||||||||| |||  ||| |||||    
T  26292205 cacgttttctttctttgtattttcttcagtttttctgcttttcttgctgcataagttgccttgtgaactccaaaatgtgatcaaattac--atagaaatt 26292108  T
Q  160 acgtaatgacgagatgtcatca 181  Q
    |||||||||||||| |||||||    
T  26292107 acgtaatgacgagacgtcatca 26292086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 16 - 157
Target Start/End: Complemental strand, 34831140 - 34831011
Alignment:
Q  16 attttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgctctttttgctgcataagt 115  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||||| |||  ||| |||||||||||           ||||||| |||||||||||    
T  34831140 attttggtcttctaaaatc-gtgtcacgtttttaccaaatcgtgacacgattttcttctttgtattttcta----------ctctttt-gctgcataagt 34831053  T
Q  116 tgccttctgaactccaaattgtgatcaaaatacatataaaaa 157  Q
    |||||| |||||||||| ||||||||||||||||||||||||    
T  34831052 tgccttgtgaactccaatttgtgatcaaaatacatataaaaa 34831011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 36 - 181
Target Start/End: Complemental strand, 18952121 - 18951976
Alignment:
Q  36 gtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagtttt-ctgctctttttgctgcataagttgccttctgaactccaaat 134  Q
    ||||||||||||  |  ||||||||||||||||  ||| |||||||||||| |||||| | | | || ||||||| ||||||||||| |||||| ||||     
T  18952121 gtgtcacgttttagcagaatcgtgacacgttttgcttctttgtattttcttcagtttttccgtttttcttgctgcttaagttgccttgtgaacttcaaaa 18952022  T
Q  135 tgtgatcaaaatacatataaaaattacgtaatgacgagatgtcatca 181  Q
    |||||||||| ||||||| |||||||| |||||| ||||||||||||    
T  18952021 tgtgatcaaattacatat-aaaattacataatgatgagatgtcatca 18951976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 36 - 157
Target Start/End: Original strand, 41877529 - 41877649
Alignment:
Q  36 gtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgctctttttgctgcataagttgccttctgaactccaaatt 135  Q
    ||||||||||||||||||||||||||||| ||    || |||| ||||||| |||||||| ||||||| |||||||||||| |||| |||||||||  ||    
T  41877529 gtgtcacgtttttaccaaatcgtgacacgattctcctctttgttttttcttcagttttctactctttt-gctgcataagtttccttgtgaactccacttt 41877627  T
Q  136 gtgatcaaaatacatataaaaa 157  Q
    ||||| |||||| |||||||||    
T  41877628 gtgattaaaataaatataaaaa 41877649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 52 - 181
Target Start/End: Original strand, 34133743 - 34133872
Alignment:
Q  52 aaatcgtgacacgttttctttccttgtattttctttagt-tttctgctctttttgctgcataagttgccttctgaactccaaattgtgatcaaaa-taca 149  Q
    ||||||||||||| |||  ||| |||||||||||  ||  |||||||| || |||||||||||||||| || ||||||||||| |||||| |||| |||     
T  34133743 aaatcgtgacacgatttgcttctttgtattttctacagaatttctgcttttcttgctgcataagttgctttgtgaactccaaaatgtgataaaaagtac- 34133841  T
Q  150 tataaaaattacgtaatgacgagatgtcatca 181  Q
     ||||||||||||||||||| |||||||||||    
T  34133842 -ataaaaattacgtaatgacaagatgtcatca 34133872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 52 - 181
Target Start/End: Original strand, 34143993 - 34144122
Alignment:
Q  52 aaatcgtgacacgttttctttccttgtattttctttagt-tttctgctctttttgctgcataagttgccttctgaactccaaattgtgatcaaaa-taca 149  Q
    ||||||||||||| |||  ||| |||||||||||  ||  |||||||| || |||||||||||||||| || ||||||||||| |||||| |||| |||     
T  34143993 aaatcgtgacacgatttgcttctttgtattttctacagaatttctgcttttcttgctgcataagttgctttgtgaactccaaaatgtgataaaaagtac- 34144091  T
Q  150 tataaaaattacgtaatgacgagatgtcatca 181  Q
     ||||||||||||||||||| |||||||||||    
T  34144092 -ataaaaattacgtaatgacaagatgtcatca 34144122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 157
Target Start/End: Complemental strand, 12087335 - 12087186
Alignment:
Q  16 attttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctt----------tagttttctgctctttttg 105  Q
    ||||| ||||||||||| | |||||||||||||||||||||||| |||| ||   ||| ||||||||||||          ||||||||  ||||||| |    
T  12087335 atttttgtcttctaaaatc-gtgtcacgtttttaccaaatcgtggcacgattctcttctttgtattttcttcagtttcctttagttttcaactctttt-g 12087238  T
Q  106 ctgcataagttgccttctgaactccaaattgtgatcaaaatacatataaaaa 157  Q
    |||| ||||||||||| |||||||||  ||||||| |||||| |||||||||    
T  12087237 ctgcgtaagttgccttgtgaactccactttgtgattaaaataaatataaaaa 12087186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 181
Target Start/End: Complemental strand, 17663782 - 17663753
Alignment:
Q  152 taaaaattacgtaatgacgagatgtcatca 181  Q
    ||||||||||||||||||||||||||||||    
T  17663782 taaaaattacgtaatgacgagatgtcatca 17663753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 102; Significance: 2e-50; HSPs: 2)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 36 - 181
Target Start/End: Complemental strand, 24180 - 24035
Alignment:
Q  36 gtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgctctttttgctgcataagttgccttctgaactccaaatt 135  Q
    ||||||||||||||||||||||||||||| |||| ||| ||||||||| || | |||||| ||||||||||||||||||||||||| |||||||||  ||    
T  24180 gtgtcacgtttttaccaaatcgtgacacgatttccttctttgtattttattcatttttctactctttttgctgcataagttgccttgtgaactccacttt 24081  T
Q  136 gtgatcaaaatacatataaaaattacgtaatgacgagatgtcatca 181  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||    
T  24080 gtgatcaaaatacatataaaaattacgtaatgaagagatgtcatca 24035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 52 - 181
Target Start/End: Complemental strand, 28402 - 28273
Alignment:
Q  52 aaatcgtgacacgttttctttccttgtattttctttagt-tttctgctctttttgctgcataagttgccttctgaactccaaattgtgatcaaaa-taca 149  Q
    ||||||||||||| |||  ||| |||||||||||  ||  |||||||| || |||||||||||||||| || ||||||||||| |||||| |||| |||     
T  28402 aaatcgtgacacgatttgcttctttgtattttctacagaatttctgcttttcttgctgcataagttgctttgtgaactccaaaatgtgataaaaagtac- 28304  T
Q  150 tataaaaattacgtaatgacgagatgtcatca 181  Q
     ||||||||||||||||||| |||||||||||    
T  28303 -ataaaaattacgtaatgacaagatgtcatca 28273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 94; Significance: 1e-45; HSPs: 2)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 4 - 181
Target Start/End: Complemental strand, 18778 - 18602
Alignment:
Q  4 atgtcgaagaatattttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgctctttt 103  Q
    ||||||||| |  ||||||||||| |||| | ||||||||||||||||||||| ||||||| ||   ||| |||||||||||| ||||| ||||||||||    
T  18778 atgtcgaagcaagttttggtcttccaaaatc-gtgtcacgtttttaccaaatcatgacacgattctcttctttgtattttcttcagtttcctgctctttt 18680  T
Q  104 tgctgcataagttgccttctgaactccaaattgtgatcaaaatacatataaaaattacgtaatgacgagatgtcatca 181  Q
    |||||| ||||||||||| |||||||||  |||||||||||||||||||||||||||||||||||| ||| |||||||    
T  18679 tgctgcctaagttgccttgtgaactccattttgtgatcaaaatacatataaaaattacgtaatgacaagacgtcatca 18602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 39 - 181
Target Start/End: Complemental strand, 28720 - 28578
Alignment:
Q  39 tcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgctctttttgctgcataagttgccttctgaactccaaattgtg 138  Q
    ||||||||||||||||| |||||||| || | ||| |||||| ||||| ||||| |||||||||||||||||||||||||||| |||||||||  |||||    
T  28720 tcacgtttttaccaaattgtgacacgattcccttctttgtatattcttcagtttcctgctctttttgctgcataagttgccttgtgaactccactttgtg 28621  T
Q  139 atcaaaatacatataaaaattacgtaatgacgagatgtcatca 181  Q
    ||||||||||||||||||||||||||| ||||||| |||||||    
T  28620 atcaaaatacatataaaaattacgtaacgacgagacgtcatca 28578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 16 - 157
Target Start/End: Complemental strand, 18772 - 18633
Alignment:
Q  16 attttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgctctttttgctgcataagt 115  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||||| ||   ||| |||||||||||| |||||||| ||||||| |||||||||||    
T  18772 attttggtcttctaaaatc-gtgtcacgtttttaccaaatcgtgacacgattctcttctttgtattttcttcagttttctactctttt-gctgcataagt 18675  T
Q  116 tgccttctgaactccaaattgtgatcaaaatacatataaaaa 157  Q
    |||||| |||||||||  ||||||||||||||||||||||||    
T  18674 tgccttgtgaactccactttgtgatcaaaatacatataaaaa 18633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 74; Significance: 9e-34; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 16 - 157
Target Start/End: Complemental strand, 30471 - 30332
Alignment:
Q  16 attttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgctctttttgctgcataagt 115  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||||| ||   ||| |||||||||||| |||||||| ||| |||||||||||||||    
T  30471 attttggtcttctaaaatc-gtgtcacgtttttaccaaatcgtgacacgattctcttctttgtattttcttcagttttctactc-ttttgctgcataagt 30374  T
Q  116 tgccttctgaactccaaattgtgatcaaaatacatataaaaa 157  Q
    ||||||  ||||||||  || |||||||||||||||||||||    
T  30373 tgccttgcgaactccactttatgatcaaaatacatataaaaa 30332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 9e-34; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 35 - 181
Target Start/End: Original strand, 673752 - 673899
Alignment:
Q  35 tgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagtttt--ctgctctttttgctgcataagttgccttctgaactccaa 132  Q
    ||||||||||||||  ||||||||||||||||||  ||| ||| |||||||| | ||||  ||||| || |||||||||||||||| || ||||||||||    
T  673752 tgtgtcacgtttttggcaaatcgtgacacgtttttcttctttgcattttcttcaatttttcctgcttttcttgctgcataagttgctttgtgaactccaa 673851  T
Q  133 attgtgatcaaaatacatataaaaattacgtaatgacgagatgtcatca 181  Q
    | |||||||||| ||||||| ||||||||||||||||||||||||||||    
T  673852 aatgtgatcaaattacatat-aaaattacgtaatgacgagatgtcatca 673899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 16 - 157
Target Start/End: Original strand, 37184610 - 37184749
Alignment:
Q  16 attttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgctctttttgctgcataagt 115  Q
    |||||| |||||||||| | ||||||||||||||||||||||||||||| ||   ||| |||||||||||| |||||||| ||||||| |||||||||||    
T  37184610 attttgatcttctaaaatc-gtgtcacgtttttaccaaatcgtgacacgattctcttctttgtattttcttcagttttctactctttt-gctgcataagt 37184707  T
Q  116 tgccttctgaactccaaattgtgatcaaaatacatataaaaa 157  Q
    || ||| |||||||||| ||||||||||| ||||||||||||    
T  37184708 tgacttatgaactccaatttgtgatcaaactacatataaaaa 37184749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 53 - 181
Target Start/End: Original strand, 906468 - 906596
Alignment:
Q  53 aatcgtgacacgttttctttccttgtattttctttagtttt-ctgctctttttgctgcataagttgccttctgaactccaaattgtgatcaaaatacata 151  Q
    |||| |||||||||||  ||| ||| |||||||| |||||| ||| ||||||||||||||||||| |||| |||| ||||| ||||||||||||||||||    
T  906468 aatcatgacacgttttgcttctttgcattttcttcagtttttctgttctttttgctgcataagtttccttgtgaattccaatttgtgatcaaaatacata 906567  T
Q  152 taaaaattacgtaatgacgagatgtcatca 181  Q
    | ||||||||||||||||||||||||||||    
T  906568 t-aaaattacgtaatgacgagatgtcatca 906596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 16 - 157
Target Start/End: Original strand, 3797550 - 3797689
Alignment:
Q  16 attttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgctctttttgctgcataagt 115  Q
    |||||| |||||||||| | ||||||||||||||||||||||||||||| ||   ||| |||||||||||| |||||||| ||| ||||| |||||||||    
T  3797550 attttgatcttctaaaatc-gtgtcacgtttttaccaaatcgtgacacgattctcttctttgtattttcttcagttttctactc-ttttgttgcataagt 3797647  T
Q  116 tgccttctgaactccaaattgtgatcaaaatacatataaaaa 157  Q
    ||| || |||||||||  ||||||||||||||||||||||||    
T  3797648 tgctttgtgaactccactttgtgatcaaaatacatataaaaa 3797689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 16 - 157
Target Start/End: Complemental strand, 45940793 - 45940655
Alignment:
Q  16 attttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgctctttttgctgcataagt 115  Q
    ||||||||||||||||| | |||||||||||| |||||||||||||||| ||   ||| |||||||||||| | ||||||  |||||| |||||||||||    
T  45940793 attttggtcttctaaaatc-gtgtcacgtttt-accaaatcgtgacacgattctcttctttgtattttcttcaattttctattctttt-gctgcataagt 45940697  T
Q  116 tgccttctgaactccaaattgtgatcaaaatacatataaaaa 157  Q
    |||||| |||||||||| ||||||||||||||||||||||||    
T  45940696 tgccttgtgaactccaatttgtgatcaaaatacatataaaaa 45940655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 16 - 157
Target Start/End: Original strand, 23022669 - 23022809
Alignment:
Q  16 attttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgctctttttgctgcataagt 115  Q
    |||||||||||||| || | ||||||||||||||||||||||||||||| ||   ||| |||||||||||| |||||||| ||  |||||||||||||||    
T  23022669 attttggtcttctacaatc-gtgtcacgtttttaccaaatcgtgacacgattctcttctttgtattttcttcagttttctact-attttgctgcataagt 23022766  T
Q  116 tgccttctgaactccaa-attgtgatcaaaatacatataaaaa 157  Q
    | |||| ||||||||||  ||||||||||||||||||||||||    
T  23022767 ttccttgtgaactccaattttgtgatcaaaatacatataaaaa 23022809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 4 - 157
Target Start/End: Complemental strand, 28110469 - 28110317
Alignment:
Q  4 atgtcgaagaat-attttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgctcttt 102  Q
    ||||||||| || |||||| |||||||||| | ||||||||||||||||||||||||||| | ||   ||| |||||||||||| | |||||| ||||||    
T  28110469 atgtcgaagcatgattttgatcttctaaaatc-gtgtcacgtttttaccaaatcgtgacatgattctcttctttgtattttcttcaattttctactcttt 28110371  T
Q  103 ttgctgcataagttgccttctgaactccaaattgtgatcaaaatacatataaaaa 157  Q
    | ||||||||||||| ||| |||||||||| ||||||||||| ||||||||||||    
T  28110370 t-gctgcataagttgacttgtgaactccaatttgtgatcaaactacatataaaaa 28110317  T

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Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 157
Target Start/End: Complemental strand, 20398249 - 20398101
Alignment:
Q  17 ttttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgctctttt---------tgct 107  Q
    |||| ||||||||||| | |||||||||||||||||||||||| |||| ||   ||| |||||||||||| ||||| || |  ||||         ||||    
T  20398249 tttttgtcttctaaaatc-gtgtcacgtttttaccaaatcgtggcacgattctcttctttgtattttcttcagtttccttcagttttcaactcttttgct 20398151  T
Q  108 gcataagttgccttctgaactccaaattgtgatcaaaatacatataaaaa 157  Q
    |||||||||||||| |||||||||  ||||||| |||||| |||||||||    
T  20398150 gcataagttgccttgtgaactccactttgtgattaaaataaatataaaaa 20398101  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 181
Target Start/End: Original strand, 34067323 - 34067352
Alignment:
Q  152 taaaaattacgtaatgacgagatgtcatca 181  Q
    ||||||||||||||||||||||||||||||    
T  34067323 taaaaattacgtaatgacgagatgtcatca 34067352  T

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Target: scaffold0065 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 17 - 181
Target Start/End: Original strand, 59427 - 59591
Alignment:
Q  17 ttttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttag-ttttctgctctttttgctgcataagt 115  Q
    |||||||||||||||| | ||||||||||||||||||||||||||| |||||  ||| ||| |||||||| || ||||||| ||||||||||||||||||    
T  59427 ttttggtcttctaaaatc-gtgtcacgtttttaccaaatcgtgacatgttttgcttctttgcattttcttcagtttttctgttctttttgctgcataagt 59525  T
Q  116 tgccttct-gaactccaaattgtgatcaaaatacatataaaaattacgtaatgacgagatgtcatca 181  Q
     ||||| |  ||||||||| ||||||||   |||| | |||||||||||||||||||||||||||||    
T  59526 ggccttgtaaaactccaaaatgtgatcagtttacaca-aaaaattacgtaatgacgagatgtcatca 59591  T

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Target: scaffold0056 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 17 - 104
Target Start/End: Original strand, 68271 - 68357
Alignment:
Q  17 ttttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagttttctgctcttttt 104  Q
    ||||||||||| |||| | |||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  68271 ttttggtcttccaaaatc-gtgtcatgtttttaccaaatcgtgacacgttttctttctttgtattttcttcagttttctgctcttttt 68357  T

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Target: scaffold1785 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: scaffold1785
Description:

Target: scaffold1785; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 17 - 179
Target Start/End: Complemental strand, 781 - 620
Alignment:
Q  17 ttttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagtttt-ctgctctttttgctgcataagt 115  Q
    |||||||||||||||| | ||||||||||||||||||||| |||||| ||||  ||| ||| |||||||| | |||| ||| ||||||||||||| ||||    
T  781 ttttggtcttctaaaatc-gtgtcacgtttttaccaaatcatgacacattttgcttctttgcattttcttcaatttttctgttctttttgctgcaaaagt 683  T
Q  116 tgccttctgaactccaaattgtgatcaaaatacatataaaaattacgtaatgacgagatgtcat 179  Q
    |||||| ||||||||||| | ||||||   |||| |  |||||||| ||||||| |||||||||    
T  682 tgccttgtgaactccaaaatctgatcagtttacaca-gaaaattacataatgacaagatgtcat 620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 17 - 179
Target Start/End: Complemental strand, 63391 - 63230
Alignment:
Q  17 ttttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagtttt-ctgctctttttgctgcataagt 115  Q
    |||||||||||||||| | ||||||||||||||||||||| |||||| ||||  ||| ||| |||||||| | |||| ||| ||||||||||||| ||||    
T  63391 ttttggtcttctaaaatc-gtgtcacgtttttaccaaatcatgacacattttgcttctttgcattttcttcaatttttctgttctttttgctgcaaaagt 63293  T
Q  116 tgccttctgaactccaaattgtgatcaaaatacatataaaaattacgtaatgacgagatgtcat 179  Q
    |||||| ||||||||||| | ||||||   |||| |  |||||||| ||||||| |||||||||    
T  63292 tgccttgtgaactccaaaatctgatcagtttacaca-gaaaattacataatgacaagatgtcat 63230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0216 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 17 - 181
Target Start/End: Original strand, 12678 - 12841
Alignment:
Q  17 ttttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagtttt--ctgctctttttgctgcataag 114  Q
    |||||||||||||||| | |||||| |||||   |||||||| |||||||||||| | | |||||||||| ||||||  || || || ||||||| ||||    
T  12678 ttttggtcttctaaaatc-gtgtcaagttttagacaaatcgttacacgttttctt-cttagtattttcttcagttttaacttcttttcttgctgcttaag 12775  T
Q  115 ttgccttctgaactccaaattgtgatcaaaatacatataaaaattacgtaatgacgagatgtcatca 181  Q
    |||| || | ||||||||| | ||||||||||| |||| ||||||||||||||||| ||||||||||    
T  12776 ttgctttgtaaactccaaaatatgatcaaaataaatat-aaaattacgtaatgacgtgatgtcatca 12841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0427 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: scaffold0427
Description:

Target: scaffold0427; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 75 - 157
Target Start/End: Original strand, 4597 - 4678
Alignment:
Q  75 ttgtattttctttagttttctgctctttttgctgcataagttgccttctgaactccaaattgtgatcaaaatacatataaaaa 157  Q
    |||||||||||| ||||| || ||||||| ||||||||||||||||| |||||||||| ||||||||||| ||||||||||||    
T  4597 ttgtattttcttcagtttcctactctttt-gctgcataagttgccttgtgaactccaatttgtgatcaaactacatataaaaa 4678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0427; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 4534 - 4577
Alignment:
Q  16 attttggtcttctaaaaactgtgtcacgtttttaccaaatcgtga 60  Q
    |||||| |||||||||| | |||||||||||||||||||||||||    
T  4534 attttgatcttctaaaatc-gtgtcacgtttttaccaaatcgtga 4577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 95871 - 95985
Alignment:
Q  17 ttttggtcttctaaaaactgtgtcacgtttttaccaaatcgtgacacgttttctttccttgtattttctttagtttt-ctgctctttttgctgcataagt 115  Q
    |||||||||| ||||| | ||||||||||||||||||||| ||||| |||||  ||| ||| |||| ||| |||||| ||| ||||||||||||||||||    
T  95871 ttttggtcttataaaatc-gtgtcacgtttttaccaaatcatgacatgttttgcttctttgcattt-cttcagtttttctgttctttttgctgcataagt 95968  T
Q  116 tgccttctgaactccaa 132  Q
     ||||| ||||||||||    
T  95969 ggccttgtgaactccaa 95985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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