View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7894_low_18 (Length: 420)

Name: NF7894_low_18
Description: NF7894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7894_low_18
NF7894_low_18
[»] scaffold0065 (5 HSPs)
scaffold0065 (1-289)||(44856-45162)
scaffold0065 (1-212)||(50120-50331)
scaffold0065 (308-403)||(49858-49953)
scaffold0065 (216-289)||(50003-50076)
scaffold0065 (303-344)||(44789-44830)
[»] chr7 (1 HSPs)
chr7 (1-177)||(3919559-3919735)
[»] chr8 (16 HSPs)
chr8 (1-193)||(3142573-3142765)
chr8 (2-177)||(2911536-2911711)
chr8 (2-196)||(2711691-2711885)
chr8 (48-191)||(3001875-3002018)
chr8 (2-181)||(2916536-2916715)
chr8 (48-174)||(9851554-9851680)
chr8 (48-189)||(2988861-2989002)
chr8 (232-291)||(3174051-3174110)
chr8 (212-290)||(2978920-2978998)
chr8 (48-196)||(2979942-2980090)
chr8 (86-170)||(3282972-3283056)
chr8 (227-290)||(3142850-3142913)
chr8 (227-290)||(3161804-3161867)
chr8 (232-290)||(13790633-13790691)
chr8 (64-170)||(13790826-13790932)
chr8 (232-288)||(3283187-3283243)
[»] chr6 (1 HSPs)
chr6 (48-189)||(18355258-18355399)
[»] chr1 (2 HSPs)
chr1 (48-182)||(10756111-10756245)
chr1 (208-290)||(10756313-10756395)
[»] chr4 (2 HSPs)
chr4 (48-182)||(8572575-8572709)
chr4 (208-290)||(8572421-8572503)
[»] chr3 (2 HSPs)
chr3 (48-182)||(28698535-28698669)
chr3 (208-290)||(28698381-28698463)


Alignment Details
Target: scaffold0065 (Bit Score: 157; Significance: 2e-83; HSPs: 5)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 45162 - 44856
Alignment:
Q  1 tcatctttgagtcttcttatccagttttgcacaccatgattcagttgttgtttgtcctcagcatcaaggagcacagctctgacagattcaacagtattct 100  Q
    ||||||||||||||||||||||||||||||||||||||| |  |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  45162 tcatctttgagtcttcttatccagttttgcacaccatgactttgttgttgtttctcctcagcatcaaggagcacagctctgacggattcaacagtattct 45063  T
Q  101 taagcctttccaactcgtgcataacaccatgaatccgtccaaattcacgaaaggccgcagaagccaacctgtcaaaagaaaatattcagcata-caacca 199  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||| |||| || ||||||||||||||| ||||||||||||||||||||| |||| |    
T  45062 taagcctttccaactcatgcataacaccatgaatccgtccaaactcatgaaaagctgcagaagccaacctg-caaaagaaaatattcagcataccaacta 44964  T
Q  200 agtgtgtatgata------------------aagtgttgaaaatgaagtaacctgttaatgagactagcagcaacagcatatggaatttgctcggccatc 281  Q
    |||||||||||||                  ||||| |||||||||| ||||||||||||||| |||||||||||||||||||| ||||| || |||||     
T  44963 agtgtgtatgatatatatgtacgcatatatgaagtgatgaaaatgaactaacctgttaatgaggctagcagcaacagcatatgggatttgttcagccatt 44864  T
Q  282 tttcaaaa 289  Q
     |||||||    
T  44863 cttcaaaa 44856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 50331 - 50120
Alignment:
Q  1 tcatctttgagtcttcttatccagttttgcacaccatgattcagttgttgtttgtcctcagcatcaaggagcacagctctgacagattcaacagtattct 100  Q
    |||||||||||||||||||||||| |||| ||| ||| | |  | | |||||| || |||||||| ||||||||||||| ||| ||||||||||||||||    
T  50331 tcatctttgagtcttcttatccagatttgtacagcattactttgctcttgtttctcttcagcatcgaggagcacagctcagacggattcaacagtattct 50232  T
Q  101 taagcctttccaactcgtgcataacaccatgaatccgtccaaattcacgaaaggccgcagaagccaacctgtcaaaagaaaatattcagcatacaaccaa 200  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||  || ||    
T  50231 taagccttttcaacttgtgcataacaccatgaatccgtccaaattcacgaaaagcagcagaagccaaccggtcaaaagaaaatattcagcatattactaa 50132  T
Q  201 gtgtgtatgata 212  Q
    ||||||||||||    
T  50131 gtgtgtatgata 50120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 308 - 403
Target Start/End: Complemental strand, 49953 - 49858
Alignment:
Q  308 agttgcagagtgatcagtttgagagtaggaaaagcatggtatactcttggtagtatacatacatattaaccattggataggactaaaatgtaatta 403  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||  ||||||||||||    
T  49953 agttgcagagtgatcagtttgagagtaggaaaagcatggtatactcttggtaatatacatacatattaaccattggataggaaaaaaatgtaatta 49858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 216 - 289
Target Start/End: Complemental strand, 50076 - 50003
Alignment:
Q  216 tgttgaaaatgaagtaacctgttaatgagactagcagcaacagcatatggaatttgctcggccatctttcaaaa 289  Q
    |||||||||| |||||||||||||||||| |||||||||||||||||||| ||||| |  ||||||||||||||    
T  50076 tgttgaaaattaagtaacctgttaatgaggctagcagcaacagcatatgggatttgtttagccatctttcaaaa 50003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 303 - 344
Target Start/End: Complemental strand, 44830 - 44789
Alignment:
Q  303 ttgaaagttgcagagtgatcagtttgagagtaggaaaagcat 344  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  44830 ttgaaagttgcagagtgatcagtttgagagtaggaaaagcat 44789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 3919559 - 3919735
Alignment:
Q  1 tcatctttgagtcttcttatccagttttgcacaccatgattcagttgttgtttgtcctcagcatcaaggagcacagctctgacagattcaacagtattct 100  Q
    ||||||||||| |||||||||||||||||||||||||||||  |||||||||| ||||| ||||||||||||||||||||||  |||| ||| ||| |||    
T  3919559 tcatctttgagccttcttatccagttttgcacaccatgattttgttgttgtttctcctcggcatcaaggagcacagctctgatggattgaactgtactct 3919658  T
Q  101 taagcctttccaactcgtgcataacaccatgaatccgtccaaattcacgaaaggccgcagaagccaacctgtcaaaa 177  Q
    |||||||||||||||  ||||||||||||| |||||| |||||||||||||| || |||||||||||||||| ||||    
T  3919659 taagcctttccaactgatgcataacaccataaatccgcccaaattcacgaaacgctgcagaagccaacctgtaaaaa 3919735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 89; Significance: 9e-43; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 3142573 - 3142765
Alignment:
Q  1 tcatctttgagtcttcttatccagttttgcacaccatgattcagttgttgtttgtcctcagcatcaaggagcacagctctgacagattcaacagtattct 100  Q
    |||||||||||||||||||||||| |||| ||| ||||| |    | ||||||||| ||||||||||||||||||||| |||  |||||||| || || |    
T  3142573 tcatctttgagtcttcttatccagatttgtacagcatgacttttctcttgtttgtcttcagcatcaaggagcacagctttgatggattcaactgtgtttt 3142672  T
Q  101 taagcctttccaactcgtgcataacaccatgaatccgtccaaattcacgaaaggccgcagaagccaacctgtcaaaagaaaatattcagcata 193  Q
    ||||||||||||  || | ||| ||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||| | |||||||    
T  3142673 taagcctttccagttcatccatcacaccataaatccgtccaaattcacgaaaggccgctgaagccaacctgacaaaagaaaatttccagcata 3142765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 2 - 177
Target Start/End: Original strand, 2911536 - 2911711
Alignment:
Q  2 catctttgagtcttcttatccagttttgcacaccatgattcagttgttgtttgtcctcagcatcaaggagcacagctctgacagattcaacagtattctt 101  Q
    |||||||||||||||| ||||||||||  ||| |||| ||  ||| |||||||||||||||||||||||| |||  ||||| ||| ||||| ||||||||    
T  2911536 catctttgagtcttctaatccagttttttacagcatggttttgttcttgtttgtcctcagcatcaaggagtacatttctgatagactcaactgtattctt 2911635  T
Q  102 aagcctttccaactcgtgcataacaccatgaatccgtccaaattcacgaaaggccgcagaagccaacctgtcaaaa 177  Q
    ||||||||||||||| | |||||||||||  || | |||||| ||||||||||||||||| |||||||||||||||    
T  2911636 aagcctttccaactcattcataacaccatagattcctccaaactcacgaaaggccgcagatgccaacctgtcaaaa 2911711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 2 - 196
Target Start/End: Original strand, 2711691 - 2711885
Alignment:
Q  2 catctttgagtcttcttatccagttttgcacaccatgattcagttgttgtttgtcctcagcatcaaggagcacagctctgacagattcaacagtattctt 101  Q
    |||||||||| ||||| | ||||||||| ||| ||||| |  | | ||||||||| |||||||||||||| |||||| |||  |||||||| || |||||    
T  2711691 catctttgagccttctaacccagttttgtacagcatgactttgctcttgtttgtcttcagcatcaaggaggacagctttgatggattcaactgtgttctt 2711790  T
Q  102 aagcctttccaactcgtgcataacaccatgaatccgtccaaattcacgaaaggccgcagaagccaacctgtcaaaagaaaatattcagcatacaa 196  Q
     ||  ||||||| || | ||||||||||| ||||||||||| ||||||||||||||||||||||||||||  || |||||||||| |||| ||||    
T  2711791 gagtatttccaattcatccataacaccataaatccgtccaagttcacgaaaggccgcagaagccaacctgcgaacagaaaatatttagcaaacaa 2711885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 48 - 191
Target Start/End: Complemental strand, 3002018 - 3001875
Alignment:
Q  48 ttgtttgtcctcagcatcaaggagcacagctctgacagattcaacagtattcttaagcctttccaactcgtgcataacaccatgaatccgtccaaattca 147  Q
    ||||||||| ||||||||||||||||||||| |||  |||||||| || ||||||||||||||||| || | ||||||||||| ||||| ||||||||||    
T  3002018 ttgtttgtcttcagcatcaaggagcacagctttgatggattcaactgtgttcttaagcctttccaattcatccataacaccattaatccttccaaattca 3001919  T
Q  148 cgaaaggccgcagaagccaacctgtcaaaagaaaatattcagca 191  Q
      |||||| ||||||||||||||   |||| ||||| |||||||    
T  3001918 tcaaaggctgcagaagccaacctacgaaaacaaaattttcagca 3001875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 2 - 181
Target Start/End: Original strand, 2916536 - 2916715
Alignment:
Q  2 catctttgagtcttcttatccagttttgcacaccatgattcagttgttgtttgtcctcagcatcaaggagcacagctctgacagattcaacagtattctt 101  Q
    |||| ||||||||||| ||||||||||| ||| |||| ||  ||| |||||| |||||||||||||||||||||||| |||  |||||||| || | |      
T  2916536 catcattgagtcttctaatccagttttgtacagcatggttttgttcttgtttctcctcagcatcaaggagcacagctttgatggattcaaccgtctcccg 2916635  T
Q  102 aagcctttccaactcgtgcataacaccatgaatccgtccaaattcacgaaaggccgcagaagccaacctgtcaaaagaaa 181  Q
    |||||| || | ||| | | |||||||||  ||||||| |||||||||| ||||| |||||||||| |||| ||||||||    
T  2916636 aagcctatcgacctcatacttaacaccatatatccgtcgaaattcacgacaggcctcagaagccaagctgtaaaaagaaa 2916715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 48 - 174
Target Start/End: Original strand, 9851554 - 9851680
Alignment:
Q  48 ttgtttgtcctcagcatcaaggagcacagctctgacagattcaacagtattcttaagcctttccaactcgtgcataacaccatgaatccgtccaaattca 147  Q
    |||||| || |||||||||||||||||| |||| | ||||||||| || ||||||||| ||||||| || | |||||||||||  |||||||||||||||    
T  9851554 ttgtttctcttcagcatcaaggagcacaactctaatagattcaaccgtgttcttaagcttttccaattcattcataacaccattgatccgtccaaattca 9851653  T
Q  148 cgaaaggccgcagaagccaacctgtca 174  Q
    || ||||| |||||  | |||||||||    
T  9851654 cgcaaggcagcagaccctaacctgtca 9851680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 48 - 189
Target Start/End: Complemental strand, 2989002 - 2988861
Alignment:
Q  48 ttgtttgtcctcagcatcaaggagcacagctctgacagattcaacagtattcttaagcctttccaactcgtgcataacaccatgaatccgtccaaattca 147  Q
    |||||| ||||||||||||||||| ||||||||||    |||||  || || ||||| ||||| || || | ||| ||||||| ||| ||||||||||||    
T  2989002 ttgtttctcctcagcatcaaggagtacagctctgatgacttcaattgtgtttttaagtctttctaattcatccatgacaccataaattcgtccaaattca 2988903  T
Q  148 cgaaaggccgcagaagccaacctgtcaaaagaaaatattcag 189  Q
    |||||||| |||||||||||||| | || |||||||||||||    
T  2988902 cgaaaggctgcagaagccaacctatgaagagaaaatattcag 2988861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 232 - 291
Target Start/End: Original strand, 3174051 - 3174110
Alignment:
Q  232 acctgttaatgagactagcagcaacagcatatggaatttgctcggccatctttcaaaaat 291  Q
    |||||||||||||||| |||||||||||||||||||||||||| |||||  |||||||||    
T  3174051 acctgttaatgagacttgcagcaacagcatatggaatttgctcagccattcttcaaaaat 3174110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 212 - 290
Target Start/End: Complemental strand, 2978998 - 2978920
Alignment:
Q  212 aaagtgttgaaaatgaagtaacctgttaatgagactagcagcaacagcatatggaatttgctcggccatctttcaaaaa 290  Q
    ||||||||||||||||||| ||||||||| |||||| | |||||||   ||||||||||| || |||||| ||||||||    
T  2978998 aaagtgttgaaaatgaagtcacctgttaacgagacttgtagcaacactgtatggaatttgttcagccatccttcaaaaa 2978920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 48 - 196
Target Start/End: Complemental strand, 2980090 - 2979942
Alignment:
Q  48 ttgtttgtcctcagcatcaaggagcacagctctgacagattcaacagtattcttaagcctttccaactcgtgcataacaccatgaatccgtccaaattca 147  Q
    |||||| ||||||||||||||||| ||||||||||    |||||  || || ||||| ||||| || || | ||| |||  || |||||||||||||||     
T  2980090 ttgtttctcctcagcatcaaggagtacagctctgatgacttcaattgtgtttttaagtctttctaattcatccatcacattattaatccgtccaaattcg 2979991  T
Q  148 cgaaaggccgcagaagccaacctgtcaaaagaaaatattcagcatacaa 196  Q
    || |||||  |||||||||||||    ||||||||||||||||| ||||    
T  2979990 cgtaaggcaacagaagccaacctacgtaaagaaaatattcagcaaacaa 2979942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 86 - 170
Target Start/End: Original strand, 3282972 - 3283056
Alignment:
Q  86 attcaacagtattcttaagcctttccaactcgtgcataacaccatgaatccgtccaaattcacgaaaggccgcagaagccaacct 170  Q
    |||||||||  |||||||| ||||| ||||| | ||||||||||  ||| ||||||  |||||||||||| ||||||||||||||    
T  3282972 attcaacagacttcttaagtctttctaactcatccataacaccaaaaattcgtccatgttcacgaaaggctgcagaagccaacct 3283056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 227 - 290
Target Start/End: Original strand, 3142850 - 3142913
Alignment:
Q  227 aagtaacctgttaatgagactagcagcaacagcatatggaatttgctcggccatctttcaaaaa 290  Q
    |||||||||||||| ||| || |||||||||||||| |||||||| || |||||| ||||||||    
T  3142850 aagtaacctgttaacgaggcttgcagcaacagcataaggaatttgttcagccatccttcaaaaa 3142913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 227 - 290
Target Start/End: Original strand, 3161804 - 3161867
Alignment:
Q  227 aagtaacctgttaatgagactagcagcaacagcatatggaatttgctcggccatctttcaaaaa 290  Q
    |||||||||||||| ||| || |||||||||||||| |||||||| || |||||| ||||||||    
T  3161804 aagtaacctgttaacgaggcttgcagcaacagcataaggaatttgttcagccatccttcaaaaa 3161867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 232 - 290
Target Start/End: Complemental strand, 13790691 - 13790633
Alignment:
Q  232 acctgttaatgagactagcagcaacagcatatggaatttgctcggccatctttcaaaaa 290  Q
    ||||||||| ||| ||  ||||||||||||||||||||||||| |||||| ||||||||    
T  13790691 acctgttaaagaggctttcagcaacagcatatggaatttgctcagccatccttcaaaaa 13790633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 64 - 170
Target Start/End: Complemental strand, 13790932 - 13790826
Alignment:
Q  64 tcaaggagcacagctctgacagattcaacagtattcttaagcctttccaactcgtgcataacaccatgaatccgtccaaattcacgaaaggccgcagaag 163  Q
    |||||||||||| |||| ||  |||||||||  |||||||| ||||||||||| | ||||||||||  ||   |||||| |||||||||||| || ||||    
T  13790932 tcaaggagcacaactcttacgcattcaacagagttcttaagtctttccaactcatccataacaccaaaaacttgtccaagttcacgaaaggctgccgaag 13790833  T
Q  164 ccaacct 170  Q
     ||||||    
T  13790832 tcaacct 13790826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 288
Target Start/End: Original strand, 3283187 - 3283243
Alignment:
Q  232 acctgttaatgagactagcagcaacagcatatggaatttgctcggccatctttcaaa 288  Q
    ||||||||| ||| ||  |||||||||| ||||||||||||||||||||| ||||||    
T  3283187 acctgttaaagaggctttcagcaacagcgtatggaatttgctcggccatccttcaaa 3283243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 48 - 189
Target Start/End: Complemental strand, 18355399 - 18355258
Alignment:
Q  48 ttgtttgtcctcagcatcaaggagcacagctctgacagattcaacagtattcttaagcctttccaactcgtgcataacaccatgaatccgtccaaattca 147  Q
    ||||||||| ||||||||||||||||||||| |||  |||||||| || ||||||||||||||||  || | ||| ||||||| ||| ||||||| ||||    
T  18355399 ttgtttgtcttcagcatcaaggagcacagctttgatggattcaactgtcttcttaagcctttccagttcatccatgacaccataaattcgtccaatttca 18355300  T
Q  148 cgaaaggccgcagaagccaacctgtcaaaagaaaatattcag 189  Q
    |||||||| |||||||||||||| | || |||||||||||||    
T  18355299 cgaaaggctgcagaagccaacctatgaagagaaaatattcag 18355258  T

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Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 48 - 182
Target Start/End: Original strand, 10756111 - 10756245
Alignment:
Q  48 ttgtttgtcctcagcatcaaggagcacagctctgacagattcaacagtattcttaagcctttccaactcgtgcataacaccatgaatccgtccaaattca 147  Q
    |||||||| ||||||||||||||||||||||||||  |||||||| || ||| |||| ||||| || || |   | |||  || ||||||||||||||||    
T  10756111 ttgtttgttctcagcatcaaggagcacagctctgatggattcaactgtcttcgtaaggctttctaattcatctttcacattattaatccgtccaaattca 10756210  T
Q  148 cgaaaggccgcagaagccaacctgtcaaaagaaaa 182  Q
    || |||||  ||||||||||||| | |||||||||    
T  10756211 cgtaaggcaacagaagccaacctatgaaaagaaaa 10756245  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 208 - 290
Target Start/End: Original strand, 10756313 - 10756395
Alignment:
Q  208 tgataaagtgttgaaaatgaagtaacctgttaatgagactagcagcaacagcatatggaatttgctcggccatctttcaaaaa 290  Q
    |||||||| |||||||||||| ||||| ||||||||| ||   ||||||| | ||||||||||| || |||||||||||||||    
T  10756313 tgataaagggttgaaaatgaattaacccgttaatgaggctttgagcaacaccgtatggaatttgttcagccatctttcaaaaa 10756395  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 48 - 182
Target Start/End: Complemental strand, 8572709 - 8572575
Alignment:
Q  48 ttgtttgtcctcagcatcaaggagcacagctctgacagattcaacagtattcttaagcctttccaactcgtgcataacaccatgaatccgtccaaattca 147  Q
    |||||||| |||||||||||||||| |||||||||  |||||||| || ||| |||| ||||| || || |   | |||  || ||||| ||||||||||    
T  8572709 ttgtttgttctcagcatcaaggagcgcagctctgatggattcaactgtcttcgtaagactttctaattcatctttcacattattaatccttccaaattca 8572610  T
Q  148 cgaaaggccgcagaagccaacctgtcaaaagaaaa 182  Q
    || |||||  ||||||||||||| | |||||||||    
T  8572609 cgtaaggcaacagaagccaacctatgaaaagaaaa 8572575  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 208 - 290
Target Start/End: Complemental strand, 8572503 - 8572421
Alignment:
Q  208 tgataaagtgttgaaaatgaagtaacctgttaatgagactagcagcaacagcatatggaatttgctcggccatctttcaaaaa 290  Q
    |||||||| |||||||||||| ||||| ||||||||| ||   ||||||| | | ||||||||| || |||||| ||||||||    
T  8572503 tgataaagggttgaaaatgaattaacccgttaatgaggctttgagcaacaccgtgtggaatttgttcagccatccttcaaaaa 8572421  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 48 - 182
Target Start/End: Complemental strand, 28698669 - 28698535
Alignment:
Q  48 ttgtttgtcctcagcatcaaggagcacagctctgacagattcaacagtattcttaagcctttccaactcgtgcataacaccatgaatccgtccaaattca 147  Q
    |||||||| |||||||||||||||| |||||||||  |||||||| || ||| |||| ||||| || || |   | |||  || ||||| ||||||||||    
T  28698669 ttgtttgttctcagcatcaaggagcgcagctctgatggattcaactgtcttcgtaagactttctaattcatctttcacattattaatccttccaaattca 28698570  T
Q  148 cgaaaggccgcagaagccaacctgtcaaaagaaaa 182  Q
    || |||||  ||||||||||||| | |||||||||    
T  28698569 cgtaaggcaacagaagccaacctatgaaaagaaaa 28698535  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 208 - 290
Target Start/End: Complemental strand, 28698463 - 28698381
Alignment:
Q  208 tgataaagtgttgaaaatgaagtaacctgttaatgagactagcagcaacagcatatggaatttgctcggccatctttcaaaaa 290  Q
    |||||||| |||||||||||| ||||| ||||||||| ||   ||||||| | | ||||||||| || |||||| ||||||||    
T  28698463 tgataaagggttgaaaatgaattaacccgttaatgaggctttgagcaacaccgtgtggaatttgttcagccatccttcaaaaa 28698381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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