View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7894_low_21 (Length: 402)
Name: NF7894_low_21
Description: NF7894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7894_low_21 |
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| [»] chr4 (6 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 13 - 402
Target Start/End: Complemental strand, 40311077 - 40310697
Alignment:
| Q |
13 |
aagaatatgattgggcaaacaaaggattaaaggggccaagcagaggacaaactgcttaggtaggtcctaatgacttcaagcccttagctgtatagaaagc |
112 |
Q |
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| T |
40311077 |
aagaaaatgattgggcaaacaaaggattaaaggggccaagcagaggacaaactgcttaggtaggtcctaatgacttcaagcccttagctgtatagaaagc |
40310978 |
T |
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| Q |
113 |
aatgttatatgttttaacatcttccatttcaatgagacaataaactgattgattattctcttctttttcctttccaaattctcatgtataaatataggac |
212 |
Q |
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| T |
40310977 |
aatgttatatgttttaacatcttccatttcaatgagacaatgaactgattgattattcttttctttttcctttccaaattctcatgtataaatattggac |
40310878 |
T |
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| Q |
213 |
actatgctcatttacattgcacaatcaaatattttcttccaatatattacattacgtaatacacatccatggccatattttacccctttaaaaacaatgg |
312 |
Q |
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| T |
40310877 |
actactctcgtttacattgcacaatcaaatattttcttcctatatattacattacgtaatacacatccatggccatattttacccctttaaaaacaatgg |
40310778 |
T |
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| Q |
313 |
tatcttttttatgttgttattgtggattctcgtatcatcatgtgtatatgtttggggacgaccagcaacttttaatcaagactttcatgt |
402 |
Q |
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| T |
40310777 |
tgtcttttttatgttgttattgtggattgtcgtatcatc---------tgtttggggaagaccagcaacttttaatcaagattttcatgt |
40310697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 13 - 402
Target Start/End: Complemental strand, 40321153 - 40320773
Alignment:
| Q |
13 |
aagaatatgattgggcaaacaaaggattaaaggggccaagcagaggacaaactgcttaggtaggtcctaatgacttcaagcccttagctgtatagaaagc |
112 |
Q |
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| T |
40321153 |
aagaaaatgattgggcaaacaaaggattaaaggggccaagcagaggacaaactgcttaggtaggtcctaatgacttcaagcccttagctgtatagaaagc |
40321054 |
T |
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| Q |
113 |
aatgttatatgttttaacatcttccatttcaatgagacaataaactgattgattattctcttctttttcctttccaaattctcatgtataaatataggac |
212 |
Q |
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| T |
40321053 |
aatgttatatgttttaacatcttccatttcaatgagacaatgaactgattgattattcttttctttttcctttccaaattctcatgtataaatattggac |
40320954 |
T |
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| Q |
213 |
actatgctcatttacattgcacaatcaaatattttcttccaatatattacattacgtaatacacatccatggccatattttacccctttaaaaacaatgg |
312 |
Q |
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| T |
40320953 |
actactctcgtttacattgcacaatcaaatattttcttcctatatattacattacgtaatacacatccatggccatattttacccctttaaaaacaatgg |
40320854 |
T |
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| Q |
313 |
tatcttttttatgttgttattgtggattctcgtatcatcatgtgtatatgtttggggacgaccagcaacttttaatcaagactttcatgt |
402 |
Q |
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| T |
40320853 |
tgtcttttttatgttgttattgtggattgtcgtatcatc---------tgtttggggaagaccagcaacttttaatcaagattttcatgt |
40320773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 68 - 402
Target Start/End: Complemental strand, 40314002 - 40313673
Alignment:
| Q |
68 |
ttaggtaggtcctaatgacttcaagcccttagctgtatagaaagcaat----gttatatgttttaacatcttccatttcaatgagacaataaactgattg |
163 |
Q |
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||||||||||||||| | | ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
40314002 |
ttaggtaggtcctaaggtcggcaagcacttagctgtatagaaagcaatatatgttatatgttttaacatcttccatttcaatgagacaatgaactgattg |
40313903 |
T |
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| Q |
164 |
attattctcttctttttcctttccaaattctcatgtataaatataggacactatgctcatttacattgcacaatcaaatattttcttccaatatattaca |
263 |
Q |
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| T |
40313902 |
attattctcttcgttttcctttccaaattctcatgtataaatataggacactatgctcatttacattgcacaatcaaatattttcttcctatatattaca |
40313803 |
T |
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| Q |
264 |
ttacgtaatacacatccatggccatattttacccctttaaaaacaatggtatcttttttatgttgttattgtggattctcgtatcatcatgtgtatatgt |
363 |
Q |
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|||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |
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| T |
40313802 |
ttacgtaatacacaaccatgaccatattttacccttttaaaaacaatggtatcttttttatgttgttattgtggattgtcgtatcatc---------tgt |
40313712 |
T |
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| Q |
364 |
ttggggacgaccagcaacttttaatcaagactttcatgt |
402 |
Q |
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| T |
40313711 |
ttggggaagaccagcaacttttaatcaagactttcatgt |
40313673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 68 - 402
Target Start/End: Complemental strand, 40324078 - 40323749
Alignment:
| Q |
68 |
ttaggtaggtcctaatgacttcaagcccttagctgtatagaaagcaat----gttatatgttttaacatcttccatttcaatgagacaataaactgattg |
163 |
Q |
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||||||||||||||| | | ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
40324078 |
ttaggtaggtcctaaggtcggcaagcacttagctgtatagaaagcaatatatgttatatgttttaacatcttccatttcaatgagacaatgaactgattg |
40323979 |
T |
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| Q |
164 |
attattctcttctttttcctttccaaattctcatgtataaatataggacactatgctcatttacattgcacaatcaaatattttcttccaatatattaca |
263 |
Q |
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| T |
40323978 |
attattctcttcgttttcctttccaaattctcatgtataaatataggacactatgctcatttacattgcacaatcaaatattttcttcctatatattaca |
40323879 |
T |
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| Q |
264 |
ttacgtaatacacatccatggccatattttacccctttaaaaacaatggtatcttttttatgttgttattgtggattctcgtatcatcatgtgtatatgt |
363 |
Q |
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| T |
40323878 |
ttacgtaatacacaaccatgaccatattttacccttttaaaaacaatggtatcttttttatgttgttattgtggattgtcgtatcatc---------tgt |
40323788 |
T |
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| Q |
364 |
ttggggacgaccagcaacttttaatcaagactttcatgt |
402 |
Q |
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| T |
40323787 |
ttggggaagaccagcaacttttaatcaagactttcatgt |
40323749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 41 - 187
Target Start/End: Complemental strand, 40330627 - 40330476
Alignment:
| Q |
41 |
aaaggggccaagcagaggacaa-----actgcttaggtaggtcctaatgacttcaagcccttagctgtatagaaagcaatgttatatgttttaacatctt |
135 |
Q |
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|||||||||||||||||||||| |||| |||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40330627 |
aaaggggccaagcagaggacaagacaaactgtttaggtaggtccaaatgacggcaaacccttagctgtatagaaagcaatgttatatgttttaacatctt |
40330528 |
T |
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| Q |
136 |
ccatttcaatgagacaataaactgattgattattctcttctttttcctttcc |
187 |
Q |
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| T |
40330527 |
ccattttaattggacaatgaactgatttattattctcttctttttcctttcc |
40330476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 277 - 402
Target Start/End: Complemental strand, 40330362 - 40330239
Alignment:
| Q |
277 |
atccatggccatattttacccctttaaaaacaatggtatcttttttatgttgttattgtggattctcgtatcatcatgtgtatatg-tttggggacgacc |
375 |
Q |
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||||||||||||||||| ||| |||||| ||||| || |||||||||| ||||| ||||||||||| |||||| |||| | || |||||||| |||| |
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| T |
40330362 |
atccatggccatattttccccttttaaacacaatagtgtcttttttatattgttgatgtggattctcttatcat---gtgtttttggtttggggaagacc |
40330266 |
T |
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| Q |
376 |
agcaacttttaatcaagactttcatgt |
402 |
Q |
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|||||||||||||||||| |||||||| |
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| T |
40330265 |
agcaacttttaatcaagattttcatgt |
40330239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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