View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7894_low_23 (Length: 394)
Name: NF7894_low_23
Description: NF7894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7894_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 111 - 314
Target Start/End: Complemental strand, 49160022 - 49159817
Alignment:
| Q |
111 |
atcaacgttgtaaagctatttaggattgataccataaacaaacaaagaaataaacaaatgtttgtgatgattttcattgacctctgacacattacatata |
210 |
Q |
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| T |
49160022 |
atcaatgttgtaaagctatttgagattgataccataaacaaacaaagaaacacacaaatgtttgtgatgattttcattgacctttgacacgttacatata |
49159923 |
T |
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| Q |
211 |
tagagaaaatatagaagcaatcattagaataaaaccatacaatt--tgaaaaatgtttcatattaactatttttattatttaccctaagaatgacaaata |
308 |
Q |
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| T |
49159922 |
tagagaaaatatagaagcaattattagaataaaatcatacaattagtgaaaaatgtttcacattaactgtttctattatttagcctaagaatgacaaata |
49159823 |
T |
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| Q |
309 |
tcattt |
314 |
Q |
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||||| |
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| T |
49159822 |
ccattt |
49159817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 315 - 376
Target Start/End: Complemental strand, 49159774 - 49159712
Alignment:
| Q |
315 |
gcatgataatcctatacgcttaatacaccgcattatgtca-cgattgtattggtgtaacaaat |
376 |
Q |
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| T |
49159774 |
gcatgataatcctacacgcttaatacagcacattatgtcatggattgtattggtgtaacaaat |
49159712 |
T |
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