View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7894_low_25 (Length: 364)
Name: NF7894_low_25
Description: NF7894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7894_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 16 - 281
Target Start/End: Original strand, 17784062 - 17784325
Alignment:
| Q |
16 |
caatcatcaccactacaagtcttgttaaacaatctttcagtcgaattacctgcannnnnnnctctcattaaatttataaaaataattcattcaaaagact |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| || |||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
17784062 |
caatcatcaccactacaagtcttgttaaacaatctttcagtctaagtacctgcatttttt--tgtcattaaatttataaaaataattcattcaaaagact |
17784159 |
T |
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| Q |
116 |
ataaaacattgacgggaatataaaattgttgcagaaatataataaatatattaaaacgtcattttcttatcatctgatctcaaattcttttaattaacct |
215 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
17784160 |
ataaaacattgacgggaatataaaatcgttgcagaaatataataaatatattaaaacgtcattttcatatcatctgatctcaaattcttttaattaacct |
17784259 |
T |
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| Q |
216 |
tgcatcatcggtagctttgccttcaaacacgtgtatatttataaaatgttgtattgtatttgtggg |
281 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
17784260 |
tgcatcatcggtagctttgccttcaaagacgtgtatatttataaaatgttgtattgtatttgtggg |
17784325 |
T |
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