View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7894_low_3 (Length: 611)
Name: NF7894_low_3
Description: NF7894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7894_low_3 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 551; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 19 - 601
Target Start/End: Complemental strand, 2318611 - 2318030
Alignment:
| Q |
19 |
atagccactatgtgacagggttgtgttaatggactttagaggatttatgcacttatgcggtggtgtcgcactttgataattgattgttgtaagagacttg |
118 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2318611 |
atagccactatgtgacagcgttgtgttaatggactttagaggatttatgcacttatgcggtggtgttgcactttgataattgattgttgtaagagacttg |
2318512 |
T |
|
| Q |
119 |
tttgaaattatatttgtttgattggataaaattcactaggattgcttttggtctaccctctcttatgttaattatctcacactgtcccatttttacattt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2318511 |
tttgaaattatatttgtttgattggataaaattcactacgattgcttttggtctaccctctcttatgttaattatctcacactgtcccatttttacattt |
2318412 |
T |
|
| Q |
219 |
aaataaatatatgcttatcaattaggcacatttgcattgcagtgctacacattgataaccaattattggtatcttgtgttgattgtgttttctagaacca |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2318411 |
aaataaatatatgcttatcaattaggcacatttgcattgcagtgctacacattgataaccaattattggtatcttgtgttgattgtgttttctagaacca |
2318312 |
T |
|
| Q |
319 |
tcttttttgtttagggatgtcttcagactagtgtgttattttggttgacttgtgtagtatttttcagattctttcatttcatttctagtatcaccaataa |
418 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2318311 |
tcttttttgtttagggatgtcttgagactagtgtgttattttggttgacttgtgtagtatttttcagattctttcatttcatttctagtatcaccaataa |
2318212 |
T |
|
| Q |
419 |
ggaatgaaatttacatcttgtcgtcttcttactttcaggaatctccctttttgagatttgtcaacactctatctccaataaagcctgtcaaggcttctca |
518 |
Q |
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| T |
2318211 |
ggaatgaaatttacatcttgtcgtcttcttacttt-aggaatctccctttttgagatttgtcaacactctatctccgataaagcctgtcaaggcttctca |
2318113 |
T |
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| Q |
519 |
tgcgacacatgggtttctcggactcaattctccacctctcgtattcaagtcaccacgtatcagtgctccccaccgtgaaacac |
601 |
Q |
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| T |
2318112 |
tgcgacacatgggtttctcggactcaattctccacccctcgtattcaagtcaccacgtatcagtgctccccaccgtgaaacac |
2318030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 19 - 601
Target Start/End: Complemental strand, 2309474 - 2308890
Alignment:
| Q |
19 |
atagccactatgtgacagggttgtgttaatggactttagaggatttatgcacttatgcg--gtggtgtcgcactttgataattgattgttgtaagagact |
116 |
Q |
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||||||||||| |||||| | |||||||||||||||||||||||||| |||| | |||| |||||| |||||||||||||||||||||| |||||| | |
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| T |
2309474 |
atagccactatttgacagtgctgtgttaatggactttagaggatttacgcacatgtgcgttgtggtgccgcactttgataattgattgtttcaagagagt |
2309375 |
T |
|
| Q |
117 |
tgtttgaaattatatttgtttgattggataaaattcactaggattgcttttggtctaccctctcttatgttaattatctcacactgtcccatttttacat |
216 |
Q |
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| |||| |||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||| |||||| ||| | ||||| ||| |||||| ||| |
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| T |
2309374 |
tttttggaattatatttatttgattagataaaattcactgaaattgcttttggtctaccctctctgatgttagttaacccacaccgtctcattttggcat |
2309275 |
T |
|
| Q |
217 |
ttaaataaatatatgcttatcaattaggcacatttgcattgcagtgctacacattgataaccaattattggtatcttgtgttgattgtgttttctagaac |
316 |
Q |
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| |||| ||||||||||||||||||||| |||||||||||| ||| ||||||||||||||| |||||||||||| |||||||||||||||| ||||||| |
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| T |
2309274 |
taaaatgaatatatgcttatcaattaggtacatttgcattgtagttctacacattgataactgattattggtatcctgtgttgattgtgttt-ctagaac |
2309176 |
T |
|
| Q |
317 |
catcttttttgtttagggatgtcttcagactagtgtgttattttggttgacttgtgtagtattttt-cagattctttcatttcatttctagtatcaccaa |
415 |
Q |
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| ||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||| || |
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| T |
2309175 |
cgtcttttttgtttagggatgtcttgagattagtgtgttatttacgttgacttgtgtagtattttttcggattctttcatttcatttctagtatcatgaa |
2309076 |
T |
|
| Q |
416 |
taaggaatgaaatttacatcttgtcgtcttcttactttcaggaatctccctttttgagatttgtcaacactctatctccaataaagcctgtcaaggcttc |
515 |
Q |
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|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
2309075 |
taaggaataaaatttacatcttgccgtcttcttactttcaggaatctccctttttgagatttgtcaacactctatctccgataaagcctgtcaaggcttc |
2308976 |
T |
|
| Q |
516 |
tcatgcgacacatgggtttctcggactcaattctccacctctcgtattcaagtcaccacgtatcagtgctccccaccgtgaaacac |
601 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||| |
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| T |
2308975 |
tcatgcgacacaggggtttctcggactcaattctccacctctcgtattcaagtcatcgcgtatcagtgctccccaccatgaaacac |
2308890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 457 - 530
Target Start/End: Complemental strand, 144899 - 144826
Alignment:
| Q |
457 |
gaatctccctttttgagatttgtcaacactctatctccaataaagcctgtcaaggcttctcatgcgacacatgg |
530 |
Q |
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||||||||| ||||||||||||| |||||| |||||| ||||||| |||||||||||||||||| ||||||||| |
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| T |
144899 |
gaatctccccttttgagatttgttaacactttatctctaataaagtctgtcaaggcttctcatgtgacacatgg |
144826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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