View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7894_low_4 (Length: 607)
Name: NF7894_low_4
Description: NF7894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7894_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 548; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 14 - 589
Target Start/End: Original strand, 38005634 - 38006209
Alignment:
| Q |
14 |
ttcgtgttgatcgaacagtgccgtgtggctcaagcgaaggtgataaaacaactatgtttagatcagtcgcactgtttttatttactactgctttagattc |
113 |
Q |
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| T |
38005634 |
ttcgtgttgatcgaacagtgccgtgtggctcaagcgaaggtgataaaacaacgatgtttagatcagtcgcaccgtttttatttactactgctttgaattc |
38005733 |
T |
|
| Q |
114 |
atgatacacgctagggtgtgacatatcagggatagtaactgtaacagcttcaccggcgcgtgagtttgtttcatgcgcgtagagtgctaaaagaacggct |
213 |
Q |
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| T |
38005734 |
atgatacacgctagggtgtgacatatcagggatagtaactgtaacagcttcaccggcgcgtgagtttgtttcatgcgcgtatagtgctaaaagaacggct |
38005833 |
T |
|
| Q |
214 |
tcaaacccggcttgcggttttctatccgcgactcgtgagagataaactccggcgattataggtaggaaacggaggacggtgagctggagatcaccgacat |
313 |
Q |
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| T |
38005834 |
tcaaacccggcttgcggttttctatccgcgactcgtgagagataaactccggcgattataggtaggaaacggaggacggtgagctggagatcaccgacat |
38005933 |
T |
|
| Q |
314 |
tggattggaaagtgtcatagagccaacgacaaagattgttgtcgccagcaccggagctgggttggcggaggagggtggcgatttggttgtagattttgag |
413 |
Q |
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| T |
38005934 |
tggattggaaagtgtcatagagccaacgacaaagattgttgtcgccagcaccggagctgggttggcggaggagggtggcgatttggttgtagattttgag |
38006033 |
T |
|
| Q |
414 |
ttcgttgaggatagagagaggggtggttgatgatgtaatggagagtgttgggttgacgatggtgcaaagggattggagtgcagactggattttatctgag |
513 |
Q |
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| T |
38006034 |
ttcgttgaggatagagagaggggtggttgatgatgtaatggagagtgttgggttgacgatggtgcaaagggattggagtgcaaattggattttatctgag |
38006133 |
T |
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| Q |
514 |
gagtttggggtgaaggtgacggctgaggtggtgggtgtggtggcggtggcttcgtcgtcggacattgtgtggaaga |
589 |
Q |
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| T |
38006134 |
gagtttggggtgaaggtgacggctgaggtggtgggtgtggtggcggtggcttcgtcgtcggacattgtgtggaaga |
38006209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 14 - 584
Target Start/End: Complemental strand, 26462179 - 26461609
Alignment:
| Q |
14 |
ttcgtgttgatcgaacagtgccgtgtggctcaagcgaaggtgataaaacaactatgtttagatcagtcgcactgtttttatttactactgctttagattc |
113 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||| |||| |||| ||||| |
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| T |
26462179 |
ttcgtgttgaccgaacagtgccgtgtggctcaagcgaaggcgataaaacaacgatgtttagatcagttgcactgtttttattgtttactactttggattc |
26462080 |
T |
|
| Q |
114 |
atgatacacgctagggtgtgacatatcagggatagtaactgtaacagcttcaccggcgcgtgagtttgtttcatgcgcgtagagtgctaaaagaacggct |
213 |
Q |
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|||||||||||||||||||| ||| ||||||||||||| ||||| |||||||| |||||||| ||||||||||||||||||| ||||||||||| ||| |
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| T |
26462079 |
atgatacacgctagggtgtgtcatgtcagggatagtaatggtaacggcttcaccagcgcgtgacgttgtttcatgcgcgtagagagctaaaagaacagct |
26461980 |
T |
|
| Q |
214 |
tcaaacccggcttgcggttttctatccgcgactcgtgagagataaactccggcgattataggtaggaaacggaggacggtgagctggagatcaccgacat |
313 |
Q |
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|||||||||||||||||||||||||| ||||| |||||||| ||||| |||||||| || || |||||||| ||||||||||| ||||||||| || || |
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| T |
26461979 |
tcaaacccggcttgcggttttctatcagcgacgcgtgagaggtaaacaccggcgataatcgggaggaaacgtaggacggtgagttggagatcagtgatat |
26461880 |
T |
|
| Q |
314 |
tggattggaaagtgtcatagagccaacgacaaagattgttgtcgccagcaccggagctgggttggcggaggagggtggcgatttggttgtagattttgag |
413 |
Q |
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| |||||||||||||| |||||||||||||||||||||||||| || || |||||| ||||||||||||||||||||||||||||||||||||||| | | |
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| T |
26461879 |
ttgattggaaagtgtcgtagagccaacgacaaagattgttgtcaccggcgccggagttgggttggcggaggagggtggcgatttggttgtagatttcggg |
26461780 |
T |
|
| Q |
414 |
ttcgttgaggatagagagaggggtggttgatgatgtaatggagagtgttgggttgacgatggtgcaaagggattggagtgcagactggattttatctgag |
513 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| || || |||||||||||| || |
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| T |
26461779 |
ttcgttgaggatagagagaggggtggttgatgaggtaatggagagtgttggattgacgatggtgcaaagggattggagagcggattggattttatctaag |
26461680 |
T |
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| Q |
514 |
gagtttggggtgaaggtgacggctgaggtggtgggtgtggtggcggtggcttcgtcgtcggacattgtgtg |
584 |
Q |
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| ||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||| ||||||||||| |
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| T |
26461679 |
gtgtttggggtgaaggtgacggcggaggtagtggttgtggtggcggtggcttcgtcgtcagacattgtgtg |
26461609 |
T |
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