View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7894_low_41 (Length: 249)
Name: NF7894_low_41
Description: NF7894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7894_low_41 |
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Alignment Details
Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 35 - 206
Target Start/End: Complemental strand, 33733536 - 33733365
Alignment:
| Q |
35 |
aaactagatgaaccaattgagatataagcaaccaaaagaaggagaatcaccaaaagagaggaaacataataccaacaaagagagcttaaagaagaaacaa |
134 |
Q |
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| T |
33733536 |
aaactagatgaaccaattgagatataagcaaccaaaagagggagaatcaccaaaagagaggaaacataataccaacaaagagagcttaaagaagaaacaa |
33733437 |
T |
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| Q |
135 |
cctgagagatgaatcatcatacaaacagagagaaaaacaaccaaaaaattcaatattgtcttcaatgagaac |
206 |
Q |
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| T |
33733436 |
ccagagagatgaatcatcatacaaacagagagaaaaacaaccaaaaaattcaatattgtcttcagtgagaac |
33733365 |
T |
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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 130
Target Start/End: Complemental strand, 11921641 - 11921554
Alignment:
| Q |
44 |
gaaccaattgagatataagcaaccaaaagaaggagaatcaccaaaagagaggaaacataa-taccaacaaagagagcttaaagaagaa |
130 |
Q |
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| T |
11921641 |
gaaccaatggagattgaagcaaccaaaagagggagaatcaaccaaagagatgaaacaaaagtacaaacaaagagagctcaacgaagaa |
11921554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 152
Target Start/End: Original strand, 29294539 - 29294609
Alignment:
| Q |
83 |
accaaaagagaggaaac-ataataccaacaaagagagcttaaagaagaaacaacctgagagatgaatcatc |
152 |
Q |
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|||||||||||| |||| | |||| |||||||||||||| ||||||||| ||| | |||||||||||||| |
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| T |
29294539 |
accaaaagagagaaaaccaaaatatcaacaaagagagctcaaagaagaaccaatcaaagagatgaatcatc |
29294609 |
T |
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