View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7894_low_5 (Length: 591)

Name: NF7894_low_5
Description: NF7894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7894_low_5
NF7894_low_5
[»] chr3 (22 HSPs)
chr3 (19-576)||(23183707-23184253)
chr3 (393-449)||(3587333-3587389)
chr3 (378-444)||(16789020-16789086)
chr3 (378-444)||(17005604-17005670)
chr3 (389-446)||(47775731-47775788)
chr3 (377-444)||(16192734-16192801)
chr3 (378-444)||(8039820-8039886)
chr3 (395-444)||(21419457-21419506)
chr3 (378-445)||(21478690-21478757)
chr3 (375-444)||(28678311-28678380)
chr3 (384-444)||(2731820-2731880)
chr3 (401-449)||(9789121-9789169)
chr3 (401-444)||(29508452-29508495)
chr3 (395-446)||(40150573-40150624)
chr3 (395-444)||(7928458-7928507)
chr3 (395-444)||(8383265-8383314)
chr3 (390-479)||(10455763-10455852)
chr3 (395-432)||(13414489-13414526)
chr3 (395-432)||(35222958-35222995)
chr3 (404-444)||(9624649-9624689)
chr3 (388-444)||(11313795-11313851)
chr3 (389-477)||(30994878-30994966)
[»] chr1 (29 HSPs)
chr1 (395-505)||(16927187-16927297)
chr1 (389-465)||(6427337-6427413)
chr1 (383-444)||(12707863-12707924)
chr1 (383-444)||(12713317-12713378)
chr1 (383-444)||(12717408-12717469)
chr1 (377-442)||(44482240-44482305)
chr1 (395-444)||(52903257-52903306)
chr1 (377-445)||(47989504-47989572)
chr1 (377-444)||(9828052-9828119)
chr1 (395-444)||(13436466-13436515)
chr1 (401-446)||(17425101-17425146)
chr1 (406-479)||(23531791-23531864)
chr1 (377-442)||(25361896-25361961)
chr1 (393-444)||(1864880-1864931)
chr1 (377-444)||(8010271-8010338)
chr1 (377-444)||(9629884-9629951)
chr1 (393-444)||(13997891-13997942)
chr1 (377-444)||(16252870-16252937)
chr1 (399-446)||(33940316-33940363)
chr1 (377-432)||(36906017-36906072)
chr1 (407-445)||(2288181-2288219)
chr1 (386-444)||(38503328-38503386)
chr1 (390-446)||(18022534-18022591)
chr1 (380-465)||(26462632-26462717)
chr1 (383-432)||(34371733-34371782)
chr1 (399-444)||(35999328-35999373)
chr1 (395-447)||(7988453-7988505)
chr1 (395-459)||(37318406-37318469)
chr1 (390-438)||(48148034-48148082)
[»] chr6 (35 HSPs)
chr6 (383-432)||(11424701-11424750)
chr6 (321-444)||(9522899-9523021)
chr6 (383-466)||(15443681-15443764)
chr6 (377-444)||(9617442-9617509)
chr6 (395-444)||(32511668-32511717)
chr6 (395-444)||(33419181-33419230)
chr6 (395-443)||(9629392-9629440)
chr6 (320-444)||(16766705-16766828)
chr6 (395-459)||(17168887-17168951)
chr6 (377-421)||(32313435-32313479)
chr6 (383-479)||(34073337-34073433)
chr6 (389-444)||(9025490-9025545)
chr6 (377-432)||(18367856-18367911)
chr6 (401-444)||(30866152-30866195)
chr6 (395-465)||(7265595-7265665)
chr6 (406-444)||(8389485-8389523)
chr6 (394-444)||(9658887-9658937)
chr6 (405-443)||(26314646-26314684)
chr6 (393-447)||(32299280-32299334)
chr6 (395-444)||(7151420-7151469)
chr6 (395-432)||(7377999-7378036)
chr6 (384-465)||(7723241-7723322)
chr6 (395-444)||(7996380-7996429)
chr6 (395-444)||(8022372-8022421)
chr6 (393-442)||(13364705-13364754)
chr6 (395-444)||(14721249-14721298)
chr6 (401-442)||(17411876-17411917)
chr6 (395-444)||(24614418-24614467)
chr6 (383-432)||(26562709-26562758)
chr6 (401-466)||(27661722-27661787)
chr6 (395-444)||(33001291-33001340)
chr6 (408-444)||(2224234-2224270)
chr6 (389-477)||(7086770-7086858)
chr6 (378-446)||(13815448-13815516)
chr6 (388-444)||(32320664-32320720)
[»] chr8 (24 HSPs)
chr8 (384-444)||(11803267-11803327)
chr8 (348-465)||(29519182-29519298)
chr8 (377-482)||(12570493-12570597)
chr8 (395-444)||(12606831-12606880)
chr8 (377-429)||(29447467-29447519)
chr8 (393-449)||(44505133-44505189)
chr8 (377-444)||(11927070-11927137)
chr8 (345-444)||(11944673-11944771)
chr8 (377-444)||(21465420-21465487)
chr8 (390-460)||(9936806-9936875)
chr8 (395-444)||(4786340-4786389)
chr8 (383-440)||(14634131-14634188)
chr8 (377-506)||(22651920-22652051)
chr8 (396-444)||(31236580-31236628)
chr8 (396-447)||(3508057-3508108)
chr8 (389-432)||(4122245-4122288)
chr8 (377-447)||(28819196-28819266)
chr8 (377-482)||(12570719-12570823)
chr8 (395-432)||(18964197-18964234)
chr8 (387-444)||(34222955-34223012)
chr8 (376-444)||(7442853-7442921)
chr8 (388-424)||(12402686-12402722)
chr8 (388-432)||(21520763-21520807)
chr8 (383-415)||(24205809-24205841)
[»] chr4 (23 HSPs)
chr4 (393-449)||(10013907-10013963)
chr4 (393-449)||(10021048-10021104)
chr4 (401-469)||(8820391-8820459)
chr4 (411-466)||(12077814-12077869)
chr4 (377-477)||(19230297-19230393)
chr4 (374-444)||(35952597-35952668)
chr4 (377-444)||(40742599-40742666)
chr4 (405-446)||(18491891-18491932)
chr4 (397-449)||(31681744-31681796)
chr4 (377-444)||(32915589-32915656)
chr4 (401-465)||(44081585-44081649)
chr4 (401-444)||(3712517-3712560)
chr4 (389-432)||(7970539-7970582)
chr4 (387-446)||(18513235-18513294)
chr4 (377-432)||(22234874-22234929)
chr4 (377-444)||(24613685-24613752)
chr4 (377-432)||(30982862-30982917)
chr4 (401-444)||(40774289-40774332)
chr4 (378-444)||(15029773-15029838)
chr4 (387-444)||(15659754-15659811)
chr4 (395-444)||(36635332-36635381)
chr4 (377-446)||(43368085-43368154)
chr4 (377-477)||(5832678-5832778)
[»] chr5 (18 HSPs)
chr5 (387-446)||(38749557-38749616)
chr5 (401-465)||(5467986-5468050)
chr5 (388-444)||(15410443-15410499)
chr5 (377-444)||(18592081-18592148)
chr5 (393-444)||(23012408-23012459)
chr5 (389-472)||(39205860-39205943)
chr5 (345-444)||(39698549-39698647)
chr5 (395-445)||(17925174-17925224)
chr5 (383-444)||(22423802-22423863)
chr5 (401-446)||(32630743-32630788)
chr5 (383-444)||(32766933-32766994)
chr5 (377-444)||(3966511-3966578)
chr5 (377-431)||(6035503-6035557)
chr5 (390-444)||(6471886-6471940)
chr5 (377-446)||(28296334-28296403)
chr5 (403-476)||(42488063-42488136)
chr5 (408-444)||(15405070-15405106)
chr5 (402-466)||(41600884-41600948)
[»] scaffold0110 (1 HSPs)
scaffold0110 (389-444)||(28858-28913)
[»] chr7 (34 HSPs)
chr7 (385-431)||(3142070-3142116)
chr7 (377-479)||(26329366-26329468)
chr7 (378-446)||(3520327-3520395)
chr7 (377-445)||(15902829-15902897)
chr7 (383-445)||(23128651-23128713)
chr7 (382-448)||(44172879-44172945)
chr7 (405-482)||(5235956-5236033)
chr7 (383-444)||(8160424-8160485)
chr7 (395-444)||(38143231-38143280)
chr7 (400-444)||(5956281-5956325)
chr7 (395-447)||(6326702-6326754)
chr7 (377-444)||(11700811-11700876)
chr7 (389-444)||(5233637-5233692)
chr7 (377-444)||(7438714-7438781)
chr7 (401-444)||(8239058-8239101)
chr7 (395-469)||(23849460-23849535)
chr7 (377-444)||(24339650-24339717)
chr7 (401-447)||(12278840-12278886)
chr7 (387-441)||(17307904-17307958)
chr7 (378-444)||(26033446-26033512)
chr7 (390-444)||(35297669-35297723)
chr7 (406-443)||(3938152-3938189)
chr7 (395-444)||(7197299-7197348)
chr7 (380-425)||(11744175-11744220)
chr7 (387-444)||(11890913-11890970)
chr7 (395-444)||(24146824-24146873)
chr7 (399-448)||(32855358-32855407)
chr7 (387-432)||(33384576-33384621)
chr7 (392-445)||(36314626-36314679)
chr7 (388-476)||(7328686-7328774)
chr7 (404-444)||(10377515-10377555)
chr7 (387-447)||(16341501-16341561)
chr7 (380-444)||(19206058-19206122)
chr7 (388-432)||(22602705-22602749)
[»] scaffold0022 (1 HSPs)
scaffold0022 (389-446)||(99899-99956)
[»] scaffold0008 (1 HSPs)
scaffold0008 (377-465)||(263356-263444)
[»] chr2 (21 HSPs)
chr2 (390-465)||(4763454-4763530)
chr2 (389-476)||(18420430-18420517)
chr2 (389-444)||(18622614-18622669)
chr2 (401-444)||(31808085-31808128)
chr2 (377-432)||(35056888-35056943)
chr2 (395-444)||(34691807-34691856)
chr2 (395-444)||(34714219-34714268)
chr2 (388-444)||(17087935-17087990)
chr2 (407-479)||(21782832-21782904)
chr2 (399-430)||(22556983-22557014)
chr2 (377-444)||(24975309-24975376)
chr2 (401-476)||(35449489-35449564)
chr2 (377-463)||(4882680-4882766)
chr2 (402-444)||(16069263-16069305)
chr2 (377-431)||(28524447-28524501)
chr2 (395-489)||(37497083-37497177)
chr2 (384-444)||(2665881-2665939)
chr2 (383-415)||(18054793-18054825)
chr2 (377-445)||(19613597-19613665)
chr2 (388-444)||(30527590-30527646)
chr2 (384-444)||(44860328-44860388)
[»] scaffold0036 (1 HSPs)
scaffold0036 (377-444)||(9731-9798)
[»] scaffold0376 (1 HSPs)
scaffold0376 (384-444)||(6320-6380)
[»] scaffold0020 (1 HSPs)
scaffold0020 (377-443)||(137789-137855)
[»] scaffold0011 (1 HSPs)
scaffold0011 (395-445)||(240023-240073)
[»] scaffold0044 (1 HSPs)
scaffold0044 (378-443)||(53189-53254)
[»] scaffold0123 (1 HSPs)
scaffold0123 (384-432)||(44516-44564)


Alignment Details
Target: chr3 (Bit Score: 413; Significance: 0; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 19 - 576
Target Start/End: Original strand, 23183707 - 23184253
Alignment:
Q  19 aatcccgctaaaaaataattgtaaatacacttgttactgttttttga-ccctaagtctcctttactttagaagtagacaccacaactaaatttctcacgc 117  Q
    |||| ||||| ||| |||||||||||||| |||||| |||||||||| ||| ||||||||| ||||||||||| ||||||| ||||||||||||||||||    
T  23183707 aatcacgctagaaagtaattgtaaatacatttgttagtgttttttgaaccccaagtctcctctactttagaaggagacaccgcaactaaatttctcacgc 23183806  T
Q  118 ataattaaaggcatgacttgtttatgcccactattgctccgtgaaactttcacatagattctcacgcatgctatgaagttaatttcaagcaaagaatctt 217  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  23183807 ataattaaaggcatgacttgtatatgcccactattgctccgtgaaactttcacatagattctcacgcatgctatggagttaatttcaagcaaagaatctt 23183906  T
Q  218 ttgtgatgatgctcaaatgcagagattctctaacacttcttattattacttgctccgaagtacatgccataaaataagcactataaacaacacgtggtac 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||    
T  23183907 ttgtgatgatgctcaaatgcagagattctctaacacttcttattattactt----------acatgccataaaataagcactataaacaacacgtggtac 23183996  T
Q  318 acgctatgaagcatggatactattcttattaggcatgtctcggtctcagatacatgttggtgtctgacaccgacacaacaccaacacatataattacatt 417  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||| |||| |  |||||||||||||||||||||| ||||||||||||||||||||     
T  23183997 acgctatgaagcacggatactattcgtattaggcatgtctcggtctcggatatacattggtgtctgacaccgacacaataccaacacatataattacata 23184096  T
Q  418 gaattatatgattttgttaaattattatcaatattgacgtgtcagtgtttgtatcgtgtccaatgactgtgtgtatccgtacttcataggataggtgtca 517  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  | ||||||    
T  23184097 gaattatatgattttgtcaaattattatcaatattgacgtgtcagtgtttgtatcgtgtccaatgacagtgtgtatccgtacttcatagg--acgtgtca 23184194  T
Q  518 tgtgcagtattcatgcagcttttaacgttggagaaatacaactatactgcaaaacttga 576  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  23184195 tgtgcagtattcatgcggcttttaacgttggagaaatacaactatactgcaaaacttga 23184253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 393 - 449
Target Start/End: Original strand, 3587333 - 3587389
Alignment:
Q  393 caacaccaacacatataattacattgaattatatgattttgttaaattattatcaat 449  Q
    ||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||    
T  3587333 caacaccaacacatataattacattaaattatattattttgtaaaattattatcaat 3587389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 378 - 444
Target Start/End: Complemental strand, 16789086 - 16789020
Alignment:
Q  378 tgtctgacaccgacacaacaccaacacatataattacattgaattatatgattttgttaaattatta 444  Q
    |||| ||||| ||||| |||||||||| |||||||||| |||||||||||||||| |||||||||||    
T  16789086 tgtccgacactgacacgacaccaacacttataattacactgaattatatgatttttttaaattatta 16789020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 378 - 444
Target Start/End: Original strand, 17005604 - 17005670
Alignment:
Q  378 tgtctgacaccgacacaacaccaacacatataattacattgaattatatgattttgttaaattatta 444  Q
    ||||||||||| |||||||||| |||| |||||||||| |||||||||||||||| | |||||||||    
T  17005604 tgtctgacaccaacacaacaccgacacttataattacactgaattatatgattttatcaaattatta 17005670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 389 - 446
Target Start/End: Complemental strand, 47775788 - 47775731
Alignment:
Q  389 gacacaacaccaacacatataattacattgaattatatgattttgttaaattattatc 446  Q
    |||||||||||||||||| ||||||||||||||||||| ||||| ||| |||||||||    
T  47775788 gacacaacaccaacacatgtaattacattgaattatatcatttttttagattattatc 47775731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 377 - 444
Target Start/End: Original strand, 16192734 - 16192801
Alignment:
Q  377 gtgtctgacaccgacacaacaccaacacatataattacattgaattatatgattttgttaaattatta 444  Q
    ||||||||||||||||| ||| ||||||||||||||||| |||||||| | ||||| | |||||||||    
T  16192734 gtgtctgacaccgacacgacatcaacacatataattacactgaattatgttattttctcaaattatta 16192801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 378 - 444
Target Start/End: Original strand, 8039820 - 8039886
Alignment:
Q  378 tgtctgacaccgacacaacaccaacacatataattacattgaattatatgattttgttaaattatta 444  Q
    |||| ||||||||||| ||||| ||||||||||||||| |||||||||| ||||| | |||||||||    
T  8039820 tgtccgacaccgacacgacaccgacacatataattacactgaattatataattttctcaaattatta 8039886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 395 - 444
Target Start/End: Original strand, 21419457 - 21419506
Alignment:
Q  395 acaccaacacatataattacattgaattatatgattttgttaaattatta 444  Q
    ||||||||| |||||||||||||||||||||| ||||| |||||||||||    
T  21419457 acaccaacatatataattacattgaattatattattttcttaaattatta 21419506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 378 - 445
Target Start/End: Complemental strand, 21478757 - 21478690
Alignment:
Q  378 tgtctgacaccgacacaacaccaacacatataattacattgaattatatgattttgttaaattattat 445  Q
    ||||||||||| | ||||||||||||||||| |||||||||| |||| | || |||| ||||||||||    
T  21478757 tgtctgacaccaaaacaacaccaacacatatgattacattgatttatgtcatcttgtgaaattattat 21478690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 375 - 444
Target Start/End: Complemental strand, 28678380 - 28678311
Alignment:
Q  375 tggtgtctgacaccgacacaacaccaacacatataattacattgaattatatgattttgttaaattatta 444  Q
    |||||||||||||| |||| ||||| ||||||| ||||| | | |||||| ||||||| |||||||||||    
T  28678380 tggtgtctgacaccaacacgacaccgacacatacaattatactaaattatgtgattttattaaattatta 28678311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 384 - 444
Target Start/End: Complemental strand, 2731880 - 2731820
Alignment:
Q  384 acaccgacacaacaccaacacatataattacattgaattatatgattttgttaaattatta 444  Q
    |||||||||||||||  ||||||||||||||| | |||||| ||||||| ||||| |||||    
T  2731880 acaccgacacaacacatacacatataattacacttaattatgtgattttcttaaagtatta 2731820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 401 - 449
Target Start/End: Complemental strand, 9789169 - 9789121
Alignment:
Q  401 acacatataattacattgaattatatgattttgttaaattattatcaat 449  Q
    ||||||||||||||||| |||||||| ||||| | ||||||||||||||    
T  9789169 acacatataattacattaaattatattattttataaaattattatcaat 9789121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 401 - 444
Target Start/End: Complemental strand, 29508495 - 29508452
Alignment:
Q  401 acacatataattacattgaattatatgattttgttaaattatta 444  Q
    ||||||||||||||| |||||||||||||||| | |||||||||    
T  29508495 acacatataattacactgaattatatgattttttcaaattatta 29508452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 395 - 446
Target Start/End: Original strand, 40150573 - 40150624
Alignment:
Q  395 acaccaacacatataattacattgaattatatgattttgttaaattattatc 446  Q
    ||||| |||||||| ||||||||||||||||| ||||| | |||||||||||    
T  40150573 acaccgacacatatgattacattgaattatatcattttctcaaattattatc 40150624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 444
Target Start/End: Complemental strand, 7928507 - 7928458
Alignment:
Q  395 acaccaacacatataattacattgaattatatgattttgttaaattatta 444  Q
    ||||| ||||||||||||||| |||||||| ||||||| | |||||||||    
T  7928507 acaccgacacatataattacactgaattatgtgattttttcaaattatta 7928458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 444
Target Start/End: Complemental strand, 8383314 - 8383265
Alignment:
Q  395 acaccaacacatataattacattgaattatatgattttgttaaattatta 444  Q
    ||||| |||| |||||||||| |||||||||||||||| | |||||||||    
T  8383314 acaccgacacttataattacactgaattatatgattttctcaaattatta 8383265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 479
Target Start/End: Complemental strand, 10455852 - 10455763
Alignment:
Q  390 acacaacaccaacacatataattacattgaattatatgattttgttaaattattatcaatattgacgtgtcagtgtttgtatcgtgtcca 479  Q
    |||| ||||||||||||||||||||| | | |||||||||||| | | ||||||| || | ||| ||||||| ||  ||| |||||||||    
T  10455852 acacgacaccaacacatataattacacttagttatatgattttctcatattattagcagtgttggcgtgtcaatgcctgtgtcgtgtcca 10455763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 432
Target Start/End: Complemental strand, 13414526 - 13414489
Alignment:
Q  395 acaccaacacatataattacattgaattatatgatttt 432  Q
    ||||| |||||||||||||||||||||||| |||||||    
T  13414526 acaccgacacatataattacattgaattatttgatttt 13414489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 432
Target Start/End: Complemental strand, 35222995 - 35222958
Alignment:
Q  395 acaccaacacatataattacattgaattatatgatttt 432  Q
    ||||| |||||||||||||||||||||||| |||||||    
T  35222995 acaccgacacatataattacattgaattatgtgatttt 35222958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 404 - 444
Target Start/End: Complemental strand, 9624689 - 9624649
Alignment:
Q  404 catataattacattgaattatatgattttgttaaattatta 444  Q
    ||||||||||||||||||||| ||||||| | |||||||||    
T  9624689 catataattacattgaattatgtgattttctcaaattatta 9624649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 388 - 444
Target Start/End: Original strand, 11313795 - 11313851
Alignment:
Q  388 cgacacaacaccaacacatataattacattgaattatatgattttgttaaattatta 444  Q
    |||||| |||| |||||||||||||||| | |||||| ||||||| | |||||||||    
T  11313795 cgacacgacactaacacatataattacactaaattatgtgattttctcaaattatta 11313851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 389 - 477
Target Start/End: Original strand, 30994878 - 30994966
Alignment:
Q  389 gacacaacaccaacacatataattacattgaattatatgattttgttaaattattatcaatattgacgtgtcagtgtttgtatcgtgtc 477  Q
    ||||||||||  | || |||||||||| |||||| | ||||||| ||||||||||| || | |  |||||||| ||||||| |||||||    
T  30994878 gacacaacactgatacgtataattacactgaattgtgtgattttcttaaattattagcagtgtgaacgtgtcaatgtttgtgtcgtgtc 30994966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 395 - 505
Target Start/End: Original strand, 16927187 - 16927297
Alignment:
Q  395 acaccaacacatataattacattgaattatatgattttgttaaattattatcaatattgacgtgtcagtgtttgtatcgtgtccaatgactgtgtgtatc 494  Q
    ||||||||| ||||||||||| |||||||||||||||| | ||||||||| | ||   ||||||||||||| ||| ||||||   ||| |||||||||||    
T  16927187 acaccaacatatataattacactgaattatatgattttttcaaattattagctatgccgacgtgtcagtgtctgtgtcgtgtttgatgtctgtgtgtatc 16927286  T
Q  495 cgtacttcata 505  Q
    ||| |||||||    
T  16927287 cgtgcttcata 16927297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 389 - 465
Target Start/End: Complemental strand, 6427413 - 6427337
Alignment:
Q  389 gacacaacaccaacacatataattacattgaattatatgattttgttaaattattatcaatattgacgtgtcagtgt 465  Q
    ||||| |||||||||||||||||||||||||||||| ||||||| | ||||||||| |  | ||| |||||||||||    
T  6427413 gacacgacaccaacacatataattacattgaattatgtgattttctcaaattattagcggtgttggcgtgtcagtgt 6427337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 383 - 444
Target Start/End: Original strand, 12707863 - 12707924
Alignment:
Q  383 gacaccgacacaacaccaacacatataattacattgaattatatgattttgttaaattatta 444  Q
    |||||||||| |||||||| |||||||||| || | |||||||||||||| |||||||||||    
T  12707863 gacaccgacataacaccaatacatataattgcactaaattatatgattttcttaaattatta 12707924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 383 - 444
Target Start/End: Original strand, 12713317 - 12713378
Alignment:
Q  383 gacaccgacacaacaccaacacatataattacattgaattatatgattttgttaaattatta 444  Q
    |||||||||| |||||||| ||||||||||||| | |||||| ||||||| |||||||||||    
T  12713317 gacaccgacataacaccaatacatataattacactaaattatgtgattttcttaaattatta 12713378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 383 - 444
Target Start/End: Original strand, 12717408 - 12717469
Alignment:
Q  383 gacaccgacacaacaccaacacatataattacattgaattatatgattttgttaaattatta 444  Q
    |||||||||| |||||||| ||||||||||||| | |||||| ||||||| |||||||||||    
T  12717408 gacaccgacataacaccaatacatataattacactaaattatgtgattttcttaaattatta 12717469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 377 - 442
Target Start/End: Complemental strand, 44482305 - 44482240
Alignment:
Q  377 gtgtctgacaccgacacaacaccaacacatataattacattgaattatatgattttgttaaattat 442  Q
    ||||| ||||||||||| ||||| ||||||||||||||| |||||||| ||||||| | |||||||    
T  44482305 gtgtccgacaccgacacgacaccgacacatataattacactgaattatgtgattttctcaaattat 44482240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 395 - 444
Target Start/End: Complemental strand, 52903306 - 52903257
Alignment:
Q  395 acaccaacacatataattacattgaattatatgattttgttaaattatta 444  Q
    ||||| ||||||||||||||| |||||||||||||||| |||||||||||    
T  52903306 acaccgacacatataattacactgaattatatgattttattaaattatta 52903257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 377 - 445
Target Start/End: Complemental strand, 47989572 - 47989504
Alignment:
Q  377 gtgtctgacaccgacacaacaccaacacatataattacattgaattatatgattttgttaaattattat 445  Q
    ||||| ||||||||||| ||||| |||| | |||||||| |||||||| ||||||| ||||||||||||    
T  47989572 gtgtccgacaccgacacgacaccgacacttgtaattacactgaattatgtgatttttttaaattattat 47989504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 377 - 444
Target Start/End: Complemental strand, 9828119 - 9828052
Alignment:
Q  377 gtgtctgacaccgacacaacaccaacacatataattacattgaattatatgattttgttaaattatta 444  Q
    ||||||||||| ||||| ||||| ||||||| ||||||| |||||||| ||||||| | |||||||||    
T  9828119 gtgtctgacacggacacgacaccgacacataaaattacactgaattatgtgattttatcaaattatta 9828052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 395 - 444
Target Start/End: Complemental strand, 13436515 - 13436466
Alignment:
Q  395 acaccaacacatataattacattgaattatatgattttgttaaattatta 444  Q
    ||||||||||||||||||||| |||||||| ||||||  |||||||||||    
T  13436515 acaccaacacatataattacactgaattatgtgatttccttaaattatta 13436466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 401 - 446
Target Start/End: Original strand, 17425101 - 17425146
Alignment:
Q  401 acacatataattacattgaattatatgattttgttaaattattatc 446  Q
    |||||||||||||||||||||||| ||||||| | |||||||||||    
T  17425101 acacatataattacattgaattatgtgattttatcaaattattatc 17425146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 406 - 479
Target Start/End: Original strand, 23531791 - 23531864
Alignment:
Q  406 tataattacattgaattatatgattttgttaaattattatcaatattgacgtgtcagtgtttgtatcgtgtcca 479  Q
    ||||||||||||||||||| |||| || | ||||||||| || |||||| ||||| ||||  ||||||||||||    
T  23531791 tataattacattgaattatgtgatattttcaaattattagcagtattgaagtgtcggtgtccgtatcgtgtcca 23531864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 377 - 442
Target Start/End: Complemental strand, 25361961 - 25361896
Alignment:
Q  377 gtgtctgacaccgacacaacaccaacacatataattacattgaattatatgattttgttaaattat 442  Q
    ||||| ||||||||||| ||||  ||||||||||||||| |||||||| ||||||| | |||||||    
T  25361961 gtgtccgacaccgacacgacactgacacatataattacactgaattatgtgattttctcaaattat 25361896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 393 - 444
Target Start/End: Original strand, 1864880 - 1864931
Alignment:
Q  393 caacaccaacacatataattacattgaattatatgattttgttaaattatta 444  Q
    ||||||| ||||||||||||||| |||||||| ||||||| | |||||||||    
T  1864880 caacaccgacacatataattacactgaattatgtgattttctcaaattatta 1864931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 444
Target Start/End: Original strand, 8010271 - 8010338
Alignment:
Q  377 gtgtctgacaccgacacaacaccaacacatataattacattgaattatatgattttgttaaattatta 444  Q
    |||||| |||||||||||||| | |||| |||||||| | |||||||||| ||||| | |||||||||    
T  8010271 gtgtctcacaccgacacaacatcgacacttataattatactgaattatataattttttcaaattatta 8010338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 444
Target Start/End: Original strand, 9629884 - 9629951
Alignment:
Q  377 gtgtctgacaccgacacaacaccaacacatataattacattgaattatatgattttgttaaattatta 444  Q
    ||||| |||| |||||| ||||| |||| |||||| ||| |||||||||||||||| | |||||||||    
T  9629884 gtgtccgacatcgacacgacaccgacacttataatcacactgaattatatgattttatcaaattatta 9629951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 393 - 444
Target Start/End: Complemental strand, 13997942 - 13997891
Alignment:
Q  393 caacaccaacacatataattacattgaattatatgattttgttaaattatta 444  Q
    ||||||| ||||||||||||||| |||||||| ||||||| |||||| ||||    
T  13997942 caacaccgacacatataattacactgaattatgtgatttttttaaataatta 13997891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 444
Target Start/End: Original strand, 16252870 - 16252937
Alignment:
Q  377 gtgtctgacaccgacacaacaccaacacatataattacattgaattatatgattttgttaaattatta 444  Q
    |||||| ||||||||  ||||| |||||||||||||||| ||||| |||| ||||| || ||||||||    
T  16252870 gtgtctaacaccgacctaacacgaacacatataattacactgaatcatatcattttcttgaattatta 16252937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 399 - 446
Target Start/End: Complemental strand, 33940363 - 33940316
Alignment:
Q  399 caacacatataattacattgaattatatgattttgttaaattattatc 446  Q
    |||||||||||||||||||||||| ||| |||||  ||||||||||||    
T  33940363 caacacatataattacattgaattgtatcattttcataaattattatc 33940316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 432
Target Start/End: Complemental strand, 36906072 - 36906017
Alignment:
Q  377 gtgtctgacaccgacacaacaccaacacatataattacattgaattatatgatttt 432  Q
    ||||| ||||| |||||||| |||||||||||||||||  |||||||| |||||||    
T  36906072 gtgtccgacactgacacaacgccaacacatataattactctgaattatgtgatttt 36906017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 407 - 445
Target Start/End: Original strand, 2288181 - 2288219
Alignment:
Q  407 ataattacattgaattatatgattttgttaaattattat 445  Q
    |||||||||||||||||| ||||||| ||||||||||||    
T  2288181 ataattacattgaattatgtgattttcttaaattattat 2288219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 386 - 444
Target Start/End: Complemental strand, 38503386 - 38503328
Alignment:
Q  386 accgacacaacaccaacacatataattacattgaattatatgattttgttaaattatta 444  Q
    |||||||  ||||| ||||||||||||||| |||| ||||||||||| | |||||||||    
T  38503386 accgacaggacaccgacacatataattacactgaaatatatgattttctcaaattatta 38503328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 446
Target Start/End: Complemental strand, 18022591 - 18022534
Alignment:
Q  390 acacaacaccaacacatataattacattgaattatatgattttg-ttaaattattatc 446  Q
    |||||||||||||||||  |||||||||||||| | || ||||| |||||||||||||    
T  18022591 acacaacaccaacacattcaattacattgaattgtctgtttttgcttaaattattatc 18022534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 465
Target Start/End: Original strand, 26462632 - 26462717
Alignment:
Q  380 tctgacaccgacacaacaccaacacatataattacattgaattatatgattttgttaaattattatcaatattgacgtgtcagtgt 465  Q
    ||||||| |||||| || || |||||| | |||||||| |||||| | ||||| |||||||||||||| | | |||||||| ||||    
T  26462632 tctgacatcgacactactccgacacatgtgattacattcaattatttcattttcttaaattattatcagtgtcgacgtgtcggtgt 26462717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 432
Target Start/End: Complemental strand, 34371782 - 34371733
Alignment:
Q  383 gacaccgacacaacaccaacacatataattacattgaattatatgatttt 432  Q
    |||||| |||| ||||| ||||||||||||||| |||||||| |||||||    
T  34371782 gacaccaacacgacaccgacacatataattacactgaattatgtgatttt 34371733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 444
Target Start/End: Original strand, 35999328 - 35999373
Alignment:
Q  399 caacacatataattacattgaattatatgattttgttaaattatta 444  Q
    ||||||||||||||| | | |||||||||||||| |||||||||||    
T  35999328 caacacatataattatactaaattatatgattttcttaaattatta 35999373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 395 - 447
Target Start/End: Original strand, 7988453 - 7988505
Alignment:
Q  395 acaccaacacatataattacattgaattatatgattttgttaaattattatca 447  Q
    |||||||||| ||| ||||||||||||||| | | ||| ||||||||||||||    
T  7988453 acaccaacacttatgattacattgaattatgtcactttcttaaattattatca 7988505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 395 - 459
Target Start/End: Complemental strand, 37318469 - 37318406
Alignment:
Q  395 acaccaacacatataattacattgaattatatgattttgttaaattattatcaatattgacgtgt 459  Q
    |||||||||||||| ||||||||||||||  |  |||| |||||||||||||| | |||||||||    
T  37318469 acaccaacacatatgattacattgaattacgtcctttt-ttaaattattatcagtgttgacgtgt 37318406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 390 - 438
Target Start/End: Original strand, 48148034 - 48148082
Alignment:
Q  390 acacaacaccaacacatataattacattgaattatatgattttgttaaa 438  Q
    |||| ||||| ||| ||||||||||| |||||||||||||||| |||||    
T  48148034 acacgacaccgacatatataattacactgaattatatgatttttttaaa 48148082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 6e-17; HSPs: 35)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 383 - 432
Target Start/End: Original strand, 11424701 - 11424750
Alignment:
Q  383 gacaccgacacaacaccaacacatataattacattgaattatatgatttt 432  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  11424701 gacaccgacacaacaccaacacatataattatattgaattatatgatttt 11424750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 321 - 444
Target Start/End: Complemental strand, 9523021 - 9522899
Alignment:
Q  321 ctatgaagcatggatactattcttattaggcatgtctcggtctcagatacatgttggtgtctgacaccgacacaacaccaacacatataattacattgaa 420  Q
    ||||||||||||||| |||||   ||||||| ||||||||| || || || ||| ||  || ||||||||||||||||| |||| | |||||||| ||||    
T  9523021 ctatgaagcatggatgctatttggattaggcgtgtctcggtgtcggacacgtgtcgga-tccgacaccgacacaacaccgacacttgtaattacactgaa 9522923  T
Q  421 ttatatgattttgttaaattatta 444  Q
    |||| ||||||| |||||||||||    
T  9522922 ttatgtgatttttttaaattatta 9522899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 383 - 466
Target Start/End: Complemental strand, 15443764 - 15443681
Alignment:
Q  383 gacaccgacacaacaccaacacatataattacattgaattatatgattttgttaaattattatcaatattgacgtgtcagtgtt 466  Q
    |||| |||||||||||||||| ||||||||| |||||||||| | ||||| | ||||||||||  || | ||||||||||||||    
T  15443764 gacatcgacacaacaccaacatatataattatattgaattatgttattttctcaaattattattgatgtcgacgtgtcagtgtt 15443681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 377 - 444
Target Start/End: Complemental strand, 9617509 - 9617442
Alignment:
Q  377 gtgtctgacaccgacacaacaccaacacatataattacattgaattatatgattttgttaaattatta 444  Q
    ||||| |||||||  || ||||| |||||||||||||||||||||||| ||||||| | |||||||||    
T  9617509 gtgtccgacaccgcgacgacaccgacacatataattacattgaattatgtgattttctcaaattatta 9617442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 395 - 444
Target Start/End: Original strand, 32511668 - 32511717
Alignment:
Q  395 acaccaacacatataattacattgaattatatgattttgttaaattatta 444  Q
    |||||||||| |||||||||| |||||||| ||||||| |||||||||||    
T  32511668 acaccaacacttataattacactgaattatgtgattttcttaaattatta 32511717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 395 - 444
Target Start/End: Complemental strand, 33419230 - 33419181
Alignment:
Q  395 acaccaacacatataattacattgaattatatgattttgttaaattatta 444  Q
    |||||||||||||||||||||||||||||||| | ||| | |||||||||    
T  33419230 acaccaacacatataattacattgaattatatcaatttttcaaattatta 33419181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 395 - 443
Target Start/End: Complemental strand, 9629440 - 9629392
Alignment:
Q  395 acaccaacacatataattacattgaattatatgattttgttaaattatt 443  Q
    ||||| |||||||||||||||||||||||| ||||||| | ||||||||    
T  9629440 acaccgacacatataattacattgaattatgtgattttctcaaattatt 9629392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 320 - 444
Target Start/End: Complemental strand, 16766828 - 16766705
Alignment:
Q  320 gctatgaagcatggatactattcttattaggcatgtctcggtctcagatacatgttggtgtctgacaccgacacaacaccaacacatataattacattga 419  Q
    ||||||||||| ||| | | |||  ||||||| |||| |||| || || || ||||| |||| ||||||||||| ||||| |||| | |||||||| |||    
T  16766828 gctatgaagcacggacattcttcggattaggcgtgtcccggtgtcggacacgtgttg-tgtccgacaccgacacgacaccgacacttgtaattacactga 16766730  T
Q  420 attatatgattttgttaaattatta 444  Q
    ||||| ||||||| | |||||||||    
T  16766729 attatgtgattttttcaaattatta 16766705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 395 - 459
Target Start/End: Complemental strand, 17168951 - 17168887
Alignment:
Q  395 acaccaacacatataattacattgaattatatgattttgttaaattattatcaatattgacgtgt 459  Q
    |||| |||||||||| |||||||||||||| | ||||| | |||||||||||||| | |||||||    
T  17168951 acacaaacacatatagttacattgaattatgtcattttttcaaattattatcaatgtcgacgtgt 17168887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 421
Target Start/End: Complemental strand, 32313479 - 32313435
Alignment:
Q  377 gtgtctgacaccgacacaacaccaacacatataattacattgaat 421  Q
    ||||||||||||||||| ||||| |||||||||||| ||||||||    
T  32313479 gtgtctgacaccgacacgacacccacacatataattgcattgaat 32313435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 383 - 479
Target Start/End: Original strand, 34073337 - 34073433
Alignment:
Q  383 gacaccgacacaacaccaacacatataattacattgaattatatgattttgttaaattattatcaatattgacgtgtcagtgtttgtatcgtgtcca 479  Q
    ||||||||||| ||||| || |||||||||||| ||||||||  |||||| | ||||||||| | || ||| | |||||||||  || |||||||||    
T  34073337 gacaccgacacgacaccgacccatataattacactgaattatgagattttctcaaattattagcgatgttggcatgtcagtgtccgtgtcgtgtcca 34073433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 444
Target Start/End: Original strand, 9025490 - 9025545
Alignment:
Q  389 gacacaacaccaacacatataattacattgaattatatgattttgttaaattatta 444  Q
    ||||| ||||| ||||||||||||||| |||||||| ||||||| | |||||||||    
T  9025490 gacacgacaccgacacatataattacactgaattatgtgattttctcaaattatta 9025545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 432
Target Start/End: Complemental strand, 18367911 - 18367856
Alignment:
Q  377 gtgtctgacaccgacacaacaccaacacatataattacattgaattatatgatttt 432  Q
    ||||||||||||||||| ||||| ||||||||||||||| || ||| | |||||||    
T  18367911 gtgtctgacaccgacacgacaccgacacatataattacactgcattttgtgatttt 18367856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 401 - 444
Target Start/End: Original strand, 30866152 - 30866195
Alignment:
Q  401 acacatataattacattgaattatatgattttgttaaattatta 444  Q
    |||||||||||||||||||||||| ||||||| | |||||||||    
T  30866152 acacatataattacattgaattatgtgattttctcaaattatta 30866195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 395 - 465
Target Start/End: Original strand, 7265595 - 7265665
Alignment:
Q  395 acaccaacacatataattacattgaattatatgattttgttaaattattatcaatattgacgtgtcagtgt 465  Q
    ||||| ||||||||||||||| |||||||| ||||||| | ||||||||| |  | ||| |||||||||||    
T  7265595 acaccgacacatataattacactgaattatgtgattttctcaaattattagcggtgttggcgtgtcagtgt 7265665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 406 - 444
Target Start/End: Original strand, 8389485 - 8389523
Alignment:
Q  406 tataattacattgaattatatgattttgttaaattatta 444  Q
    |||||||||| |||||||||||||||| |||||||||||    
T  8389485 tataattacactgaattatatgattttcttaaattatta 8389523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 394 - 444
Target Start/End: Complemental strand, 9658937 - 9658887
Alignment:
Q  394 aacaccaacacatataattacattgaattatatgattttgttaaattatta 444  Q
    |||||| ||| ||||||||||| |||||||| ||||||| |||||||||||    
T  9658937 aacaccgacaaatataattacactgaattatgtgattttcttaaattatta 9658887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 405 - 443
Target Start/End: Original strand, 26314646 - 26314684
Alignment:
Q  405 atataattacattgaattatatgattttgttaaattatt 443  Q
    |||||||||||||||||||||||||||| | ||||||||    
T  26314646 atataattacattgaattatatgattttttcaaattatt 26314684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 393 - 447
Target Start/End: Complemental strand, 32299334 - 32299280
Alignment:
Q  393 caacaccaacacatataattacattgaattatatgattttgttaaattattatca 447  Q
    ||||||| |||| ||||| ||||||||||||| ||||||| | ||||||||||||    
T  32299334 caacaccgacacgtataactacattgaattatgtgattttctcaaattattatca 32299280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 444
Target Start/End: Complemental strand, 7151469 - 7151420
Alignment:
Q  395 acaccaacacatataattacattgaattatatgattttgttaaattatta 444  Q
    ||||||||||||||||||||| | |||||| ||||||| | |||||||||    
T  7151469 acaccaacacatataattacacttaattatgtgattttttcaaattatta 7151420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 432
Target Start/End: Complemental strand, 7378036 - 7377999
Alignment:
Q  395 acaccaacacatataattacattgaattatatgatttt 432  Q
    ||||| |||||||||||||||||||||||| |||||||    
T  7378036 acaccgacacatataattacattgaattatgtgatttt 7377999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 465
Target Start/End: Original strand, 7723241 - 7723322
Alignment:
Q  384 acaccgacacaacaccaacacatataattacattgaattatatgattttgttaaattattatcaatattgacgtgtcagtgt 465  Q
    |||||||||| ||||| | |||||||||||   |||||||||||||||| | ||||||||| || | |  ||||||||||||    
T  7723241 acaccgacacgacaccgatacatataattatgctgaattatatgattttctcaaattattagcagtgtccacgtgtcagtgt 7723322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 444
Target Start/End: Original strand, 7996380 - 7996429
Alignment:
Q  395 acaccaacacatataattacattgaattatatgattttgttaaattatta 444  Q
    ||||| || |||||||||||| |||||||||||||||| | |||||||||    
T  7996380 acaccgacgcatataattacactgaattatatgattttctcaaattatta 7996429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 444
Target Start/End: Complemental strand, 8022421 - 8022372
Alignment:
Q  395 acaccaacacatataattacattgaattatatgattttgttaaattatta 444  Q
    ||||| || |||||||||||| |||||||||||||||| | |||||||||    
T  8022421 acaccgacgcatataattacactgaattatatgattttctcaaattatta 8022372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 442
Target Start/End: Original strand, 13364705 - 13364754
Alignment:
Q  393 caacaccaacacatataattacattgaattatatgattttgttaaattat 442  Q
    ||||||| |||||||| |||||| |||||||||||||||| | |||||||    
T  13364705 caacaccgacacatatgattacactgaattatatgattttctcaaattat 13364754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 444
Target Start/End: Complemental strand, 14721298 - 14721249
Alignment:
Q  395 acaccaacacatataattacattgaattatatgattttgttaaattatta 444  Q
    ||||||||||||||||||| | |||||||| | ||||| |||||||||||    
T  14721298 acaccaacacatataattatagtgaattatgtaattttcttaaattatta 14721249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 442
Target Start/End: Original strand, 17411876 - 17411917
Alignment:
Q  401 acacatataattacattgaattatatgattttgttaaattat 442  Q
    ||||||||||||| | |||||||||||||||| |||||||||    
T  17411876 acacatataattatactgaattatatgattttcttaaattat 17411917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 444
Target Start/End: Complemental strand, 24614467 - 24614418
Alignment:
Q  395 acaccaacacatataattacattgaattatatgattttgttaaattatta 444  Q
    ||||||||||||| ||||||| | |||||||| ||||| |||||||||||    
T  24614467 acaccaacacatacaattacactaaattatataatttttttaaattatta 24614418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 432
Target Start/End: Complemental strand, 26562758 - 26562709
Alignment:
Q  383 gacaccgacacaacaccaacacatataattacattgaattatatgatttt 432  Q
    ||||||||||| ||| | ||||||||||||||| |||||||| |||||||    
T  26562758 gacaccgacacgacatcgacacatataattacactgaattatgtgatttt 26562709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 466
Target Start/End: Complemental strand, 27661787 - 27661722
Alignment:
Q  401 acacatataattacattgaattatatgattttgttaaattattatcaatattgacgtgtcagtgtt 466  Q
    |||||| | ||||||||||| ||||| ||||| |||||||| ||||||| ||||||  ||||||||    
T  27661787 acacatgtgattacattgaaatatattattttcttaaattactatcaatgttgacgaatcagtgtt 27661722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 444
Target Start/End: Original strand, 33001291 - 33001340
Alignment:
Q  395 acaccaacacatataattacattgaattatatgattttgttaaattatta 444  Q
    ||||| ||||||||||||||||| |||||| ||||||| | |||||||||    
T  33001291 acaccgacacatataattacatttaattatgtgattttttcaaattatta 33001340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 408 - 444
Target Start/End: Complemental strand, 2224270 - 2224234
Alignment:
Q  408 taattacattgaattatatgattttgttaaattatta 444  Q
    |||||||| |||||||||||||||| |||||||||||    
T  2224270 taattacactgaattatatgatttttttaaattatta 2224234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 389 - 477
Target Start/End: Complemental strand, 7086858 - 7086770
Alignment:
Q  389 gacacaacaccaacacatataattacattgaattatatgattttgttaaattattatcaatattgacgtgtcagtgtttgtatcgtgtc 477  Q
    ||||| ||||| ||||||||||||||| | |||||| ||||||| | ||||||||| || |   |||||||| |||| ||| |||||||    
T  7086858 gacactacaccgacacatataattacactaaattatgtgattttctcaaattattagcagtgccgacgtgtcggtgtctgtgtcgtgtc 7086770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 378 - 446
Target Start/End: Complemental strand, 13815516 - 13815448
Alignment:
Q  378 tgtctgacaccgacacaacaccaacacatataattacattgaattatatgattttgttaaattattatc 446  Q
    ||||||| |||||||| ||||| | |||||||| | ||||||||||| ||||||| | ||| |||||||    
T  13815516 tgtctgaaaccgacacgacaccgagacatataacttcattgaattatgtgattttctcaaaatattatc 13815448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 388 - 444
Target Start/End: Original strand, 32320664 - 32320720
Alignment:
Q  388 cgacacaacaccaacacatataattacattgaattatatgattttgttaaattatta 444  Q
    |||||| ||||| | ||||||||| |||||||||||| ||||||| | |||||||||    
T  32320664 cgacacgacaccgatacatataatgacattgaattatgtgattttatcaaattatta 32320720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 384 - 444
Target Start/End: Complemental strand, 11803327 - 11803267
Alignment:
Q  384 acaccgacacaacaccaacacatataattacattgaattatatgattttgttaaattatta 444  Q
    ||||| |||||||||||||||||||||||||| |||||||| ||||||| |||||||||||    
T  11803327 acaccaacacaacaccaacacatataattacactgaattatgtgattttcttaaattatta 11803267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 348 - 465
Target Start/End: Complemental strand, 29519298 - 29519182
Alignment:
Q  348 aggcatgtctcggtctcagatacatgttggtgtctgacaccgacacaacaccaacacatataattacattgaattatatgattttgttaaattattatca 447  Q
    |||||||||| ||| || || ||||||| |||||| || | ||||||||||   ||||| | ||||||||||||||||||||||| | |||||||||||     
T  29519298 aggcatgtct-ggtgtccgacacatgttagtgtctaactctgacacaacactgtcacatgttattacattgaattatatgattttttaaaattattatcg 29519200  T
Q  448 atattgacgtgtcagtgt 465  Q
     | |||||||||||||||    
T  29519199 gtgttgacgtgtcagtgt 29519182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 377 - 482
Target Start/End: Original strand, 12570493 - 12570597
Alignment:
Q  377 gtgtctgacaccgacacaacaccaacacatataattacattgaattatatgattttgttaaattattatcaatattgacgtgtcagtgtttgtatcgtgt 476  Q
    |||||||||||||| ||| || | ||||||||||||||| | |||||| || |||| ||||||||||| || | |  ||||||| |||| ||||||||||    
T  12570493 gtgtctgacaccgataca-catcgacacatataattacacttaattatgtgtttttcttaaattattagcagtgtcaacgtgtcggtgtctgtatcgtgt 12570591  T
Q  477 ccaatg 482  Q
    ||||||    
T  12570592 ccaatg 12570597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 395 - 444
Target Start/End: Original strand, 12606831 - 12606880
Alignment:
Q  395 acaccaacacatataattacattgaattatatgattttgttaaattatta 444  Q
    ||||| |||||||||||||||||||||||||||||||| | |||||||||    
T  12606831 acaccgacacatataattacattgaattatatgattttctcaaattatta 12606880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 377 - 429
Target Start/End: Complemental strand, 29447519 - 29447467
Alignment:
Q  377 gtgtctgacaccgacacaacaccaacacatataattacattgaattatatgat 429  Q
    ||||||||||||||||| ||||||||||||||||||||| | |||||| ||||    
T  29447519 gtgtctgacaccgacacgacaccaacacatataattacacttaattatgtgat 29447467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 393 - 449
Target Start/End: Original strand, 44505133 - 44505189
Alignment:
Q  393 caacaccaacacatataattacattgaattatatgattttgttaaattattatcaat 449  Q
    ||||||| |||| |||||||||||| |||||||| ||||||| ||||||||||||||    
T  44505133 caacaccgacacttataattacattaaattatattattttgtaaaattattatcaat 44505189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 377 - 444
Target Start/End: Original strand, 11927070 - 11927137
Alignment:
Q  377 gtgtctgacaccgacacaacaccaacacatataattacattgaattatatgattttgttaaattatta 444  Q
    |||| ||||||| |||| ||||| ||||||||||||||| |||||||| ||||||| | |||||||||    
T  11927070 gtgtatgacaccaacacgacaccgacacatataattacactgaattatgtgattttatcaaattatta 11927137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 345 - 444
Target Start/End: Complemental strand, 11944771 - 11944673
Alignment:
Q  345 attaggcatgtctcggtctcagatacatgttggtgtctgacaccgacacaacaccaacacatataattacattgaattatatgattttgttaaattatta 444  Q
    ||||||| ||||||||| || ||||||||| | ||| ||||| | |||| ||||| ||||||||||||||| ||| |||| ||||||| | |||||||||    
T  11944771 attaggcgtgtctcggtgtcggatacatgtcg-tgtatgacatcaacacgacaccgacacatataattacactgagttatgtgattttatcaaattatta 11944673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 377 - 444
Target Start/End: Complemental strand, 21465487 - 21465420
Alignment:
Q  377 gtgtctgacaccgacacaacaccaacacatataattacattgaattatatgattttgttaaattatta 444  Q
    ||||| ||||| ||||| |||||||||| | ||||||||| ||||||||||||||| | |||||||||    
T  21465487 gtgtccgacactgacacgacaccaacacttgtaattacatcgaattatatgattttttcaaattatta 21465420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 390 - 460
Target Start/End: Complemental strand, 9936875 - 9936806
Alignment:
Q  390 acacaacaccaacacatataattacattgaattatatgattttgttaaattattatcaatattgacgtgtc 460  Q
    ||||||||| ||||||||| |||| |||||||||||| ||||| ||||||||||||| || | ||||||||    
T  9936875 acacaacac-aacacatatgattatattgaattatatcattttcttaaattattatcgatgtcgacgtgtc 9936806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 395 - 444
Target Start/End: Original strand, 4786340 - 4786389
Alignment:
Q  395 acaccaacacatataattacattgaattatatgattttgttaaattatta 444  Q
    ||||| ||||||||||||||| |||||||| ||||||| |||||||||||    
T  4786340 acaccgacacatataattacactgaattatgtgattttcttaaattatta 4786389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 383 - 440
Target Start/End: Original strand, 14634131 - 14634188
Alignment:
Q  383 gacaccgacacaacaccaacacatataattacattgaattatatgattttgttaaatt 440  Q
    |||| |||||| ||||||||| ||||||||||| |||||||||| ||||| |||||||    
T  14634131 gacatcgacacgacaccaacaaatataattacactgaattatataattttcttaaatt 14634188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 506
Target Start/End: Complemental strand, 22652051 - 22651920
Alignment:
Q  377 gtgtctgacaccgacacaacaccaacacatataattacattgaattatatgattttgttaaattattatcaatattgacgtgtcagtgtttgtatcgtgt 476  Q
    ||||| ||||||||||| ||||| |||| | |||||| |||||||||| ||||||| | ||||||||| |  | | | |||||||||||  || ||||||    
T  22652051 gtgtccgacaccgacacgacaccgacacttgtaattatattgaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgt 22651952  T
Q  477 ccaatgactgtgt--gtatccgtacttcatag 506  Q
    ||  || | ||||  |||||||||||||||||    
T  22651951 ccggtgtcagtgtccgtatccgtacttcatag 22651920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 396 - 444
Target Start/End: Original strand, 31236580 - 31236628
Alignment:
Q  396 caccaacacatataattacattgaattatatgattttgttaaattatta 444  Q
    |||| |||||||||||||||||||||||| ||||||| | |||||||||    
T  31236580 caccgacacatataattacattgaattatgtgattttctcaaattatta 31236628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 396 - 447
Target Start/End: Complemental strand, 3508108 - 3508057
Alignment:
Q  396 caccaacacatataattacattgaattatatgattttgttaaattattatca 447  Q
    ||||||||||||| ||||||||||||||| | ||||| | ||||||||||||    
T  3508108 caccaacacatatgattacattgaattatgttattttctcaaattattatca 3508057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 432
Target Start/End: Original strand, 4122245 - 4122288
Alignment:
Q  389 gacacaacaccaacacatataattacattgaattatatgatttt 432  Q
    ||||||||||| ||||||||||||||| |||||||||| |||||    
T  4122245 gacacaacaccgacacatataattacaatgaattatataatttt 4122288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 377 - 447
Target Start/End: Complemental strand, 28819266 - 28819196
Alignment:
Q  377 gtgtctgacaccgacacaacaccaacacatataattacattgaattatatgattttgttaaattattatca 447  Q
    ||||||||||||||||||| ||| |||||||| ||| |||||| ||||   ||||| | ||||||||||||    
T  28819266 gtgtctgacaccgacacaaaaccgacacatatgattgcattgagttatgccattttctcaaattattatca 28819196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 482
Target Start/End: Original strand, 12570719 - 12570823
Alignment:
Q  377 gtgtctgacaccgacacaacaccaacacatataattacattgaattatatgattttgttaaattattatcaatattgacgtgtcagtgtttgtatcgtgt 476  Q
    |||||||||||||| ||| |||||||| ||||||||||| | ||||||  | |||| ||||||||||| |  | |  ||||||| |||| | ||||||||    
T  12570719 gtgtctgacaccgataca-caccaacatatataattacacttaattatgcgtttttcttaaattattagcggtgtcaacgtgtcggtgtctatatcgtgt 12570817  T
Q  477 ccaatg 482  Q
    ||||||    
T  12570818 ccaatg 12570823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 432
Target Start/End: Complemental strand, 18964234 - 18964197
Alignment:
Q  395 acaccaacacatataattacattgaattatatgatttt 432  Q
    ||||| |||||||||||||||||||||||| |||||||    
T  18964234 acaccgacacatataattacattgaattatgtgatttt 18964197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 444
Target Start/End: Complemental strand, 34223012 - 34222955
Alignment:
Q  387 ccgacacaacaccaacacatataattacattgaattatatgattttgttaaattatta 444  Q
    ||||||| | ||| ||||||||||||||| | |||||| ||||||| |||||||||||    
T  34223012 ccgacaccataccgacacatataattacacttaattatgtgattttattaaattatta 34222955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 376 - 444
Target Start/End: Complemental strand, 7442921 - 7442853
Alignment:
Q  376 ggtgtctgacaccgacacaacaccaacacatataattacattgaattatatgattttgttaaattatta 444  Q
    |||||| ||||| || ||||||||||||| | |||||||| |||||||| | ||||| | |||||||||    
T  7442921 ggtgtccgacactgatacaacaccaacacttgtaattacactgaattatgtaattttatgaaattatta 7442853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 388 - 424
Target Start/End: Original strand, 12402686 - 12402722
Alignment:
Q  388 cgacacaacaccaacacatataattacattgaattat 424  Q
    |||||| ||||||||||||||||||||||| ||||||    
T  12402686 cgacacgacaccaacacatataattacattaaattat 12402722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 388 - 432
Target Start/End: Original strand, 21520763 - 21520807
Alignment:
Q  388 cgacacaacaccaacacatataattacattgaattatatgatttt 432  Q
    |||||| ||||| ||||||||||||| || |||||||||||||||    
T  21520763 cgacacgacaccgacacatataattatatcgaattatatgatttt 21520807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 383 - 415
Target Start/End: Original strand, 24205809 - 24205841
Alignment:
Q  383 gacaccgacacaacaccaacacatataattaca 415  Q
    |||||||||||||||||||||||||| ||||||    
T  24205809 gacaccgacacaacaccaacacatattattaca 24205841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 393 - 449
Target Start/End: Complemental strand, 10013963 - 10013907
Alignment:
Q  393 caacaccaacacatataattacattgaattatatgattttgttaaattattatcaat 449  Q
    ||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||    
T  10013963 caacaccaacacatataattacattaaattatattattttgtaaaattattatcaat 10013907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 393 - 449
Target Start/End: Complemental strand, 10021104 - 10021048
Alignment:
Q  393 caacaccaacacatataattacattgaattatatgattttgttaaattattatcaat 449  Q
    ||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||    
T  10021104 caacaccaacacatataattacattaaattatattattttgtaaaattattatcaat 10021048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 401 - 469
Target Start/End: Complemental strand, 8820459 - 8820391
Alignment:
Q  401 acacatataattacattgaattatatgattttgttaaattattatcaatattgacgtgtcagtgtttgt 469  Q
    |||||||| | | ||||||||||| ||||||| | ||||||||||| || |||||||||||||||||||    
T  8820459 acacatatgactccattgaattatgtgattttatcaaattattatcgatgttgacgtgtcagtgtttgt 8820391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 411 - 466
Target Start/End: Complemental strand, 12077869 - 12077814
Alignment:
Q  411 ttacattgaattatatgattttgttaaattattatcaatattgacgtgtcagtgtt 466  Q
    |||||||||||||| ||||||| | ||||||||| || ||||||||||||||||||    
T  12077869 ttacattgaattatgtgattttctcaaattattaacagtattgacgtgtcagtgtt 12077814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 377 - 477
Target Start/End: Original strand, 19230297 - 19230393
Alignment:
Q  377 gtgtctgacaccgacacaacaccaacacatataattacattgaattatatgattttgttaaattattatcaatattgacgtgtcagtgtttgtatcgtgt 476  Q
    ||||||||||||||||||    | |||| ||||||||||||||||||| | ||||| | ||||||||||| || |  | |||||||||||||||| ||||    
T  19230297 gtgtctgacaccgacaca----cgacacctataattacattgaattatgttattttctcaaattattatctatgtccatgtgtcagtgtttgtattgtgt 19230392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 374 - 444
Target Start/End: Original strand, 35952597 - 35952668
Alignment:
Q  374 ttggtgtctgacac-cgacacaacaccaacacatataattacattgaattatatgattttgttaaattatta 444  Q
    |||||||| ||||| |||||| ||||  | |||||||||||||||||||||||||||||| | |||||||||    
T  35952597 ttggtgtcggacacgcgacacgacactgatacatataattacattgaattatatgattttatcaaattatta 35952668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 377 - 444
Target Start/End: Complemental strand, 40742666 - 40742599
Alignment:
Q  377 gtgtctgacaccgacacaacaccaacacatataattacattgaattatatgattttgttaaattatta 444  Q
    ||||||||||||||||| ||| | ||||||||||||||| |  ||||||||||||| | |||||||||    
T  40742666 gtgtctgacaccgacacgacatcgacacatataattacactagattatatgattttctcaaattatta 40742599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 405 - 446
Target Start/End: Original strand, 18491891 - 18491932
Alignment:
Q  405 atataattacattgaattatatgattttgttaaattattatc 446  Q
    ||||||||||||| |||||||||||||| |||||||||||||    
T  18491891 atataattacattaaattatatgatttttttaaattattatc 18491932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 397 - 449
Target Start/End: Original strand, 31681744 - 31681796
Alignment:
Q  397 accaacacatataattacattgaattatatgattttgttaaattattatcaat 449  Q
    ||||||||||||||||||||| |||||||| ||||||| ||| | ||||||||    
T  31681744 accaacacatataattacattaaattatattattttgtaaaaattttatcaat 31681796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 444
Target Start/End: Original strand, 32915589 - 32915656
Alignment:
Q  377 gtgtctgacaccgacacaaca-ccaacacatataattacattgaattatatgattttgttaaattatta 444  Q
    |||||||||| |||||| ||| || | |||||||||||||||||||||| ||||||| |||||||||||    
T  32915589 gtgtctgacatcgacacgacaaccgaaacatataattacattgaattatgtgatttt-ttaaattatta 32915656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 401 - 465
Target Start/End: Original strand, 44081585 - 44081649
Alignment:
Q  401 acacatataattacattgaattatatgattttgttaaattattatcaatattgacgtgtcagtgt 465  Q
    ||||||||||||||||| |||||||||||||| | ||||||||| | |||| |  ||||||||||    
T  44081585 acacatataattacattaaattatatgattttttcaaattattaacgatatcggtgtgtcagtgt 44081649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 401 - 444
Target Start/End: Original strand, 3712517 - 3712560
Alignment:
Q  401 acacatataattacattgaattatatgattttgttaaattatta 444  Q
    ||||||||||||||||||||||| |||||||| | |||||||||    
T  3712517 acacatataattacattgaattacatgattttctcaaattatta 3712560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 432
Target Start/End: Complemental strand, 7970582 - 7970539
Alignment:
Q  389 gacacaacaccaacacatataattacattgaattatatgatttt 432  Q
    ||||| ||||||| ||||||||||||| ||||||||||||||||    
T  7970582 gacacgacaccaaaacatataattacactgaattatatgatttt 7970539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 446
Target Start/End: Original strand, 18513235 - 18513294
Alignment:
Q  387 ccgacacaacaccaacacatataattacattgaattatatgattttgttaaattattatc 446  Q
    ||||||||||||  |||||||| ||||||||||||||| | ||||| | |||||||||||    
T  18513235 ccgacacaacactgacacatatgattacattgaattatgtcattttctcaaattattatc 18513294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 432
Target Start/End: Original strand, 22234874 - 22234929
Alignment:
Q  377 gtgtctgacaccgacacaacaccaacacatataattacattgaattatatgatttt 432  Q
    ||||| ||||||||||| ||||| ||||||| ||||||| |||||||| |||||||    
T  22234874 gtgtcagacaccgacacgacaccgacacatagaattacactgaattatgtgatttt 22234929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 444
Target Start/End: Original strand, 24613685 - 24613752
Alignment:
Q  377 gtgtctgacaccgacacaacaccaacacatataattacattgaattatatgattttgttaaattatta 444  Q
    ||||||||||||||||  ||||| |||| | || |||||||||||||| ||||||| | |||||||||    
T  24613685 gtgtctgacaccgacatgacaccgacacttgtacttacattgaattatgtgattttctcaaattatta 24613752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 432
Target Start/End: Original strand, 30982862 - 30982917
Alignment:
Q  377 gtgtctgacaccgacacaacaccaacacatataattacattgaattatatgatttt 432  Q
    ||||||||||||||||| ||||| |||| |||||||||| |||| ||| |||||||    
T  30982862 gtgtctgacaccgacacgacaccgacacttataattacactgaaatatgtgatttt 30982917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 401 - 444
Target Start/End: Complemental strand, 40774332 - 40774289
Alignment:
Q  401 acacatataattacattgaattatatgattttgttaaattatta 444  Q
    |||||||||||||||||||||||| ||||||| | |||||||||    
T  40774332 acacatataattacattgaattatctgattttataaaattatta 40774289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 378 - 444
Target Start/End: Complemental strand, 15029838 - 15029773
Alignment:
Q  378 tgtctgacaccgacacaacaccaacacatataattacattgaattatatgattttgttaaattatta 444  Q
    |||||||| ||||| | ||||||||||||||||||||| |||||||| |||| || | |||||||||    
T  15029838 tgtctgacgccgac-cgacaccaacacatataattacactgaattatgtgatattttcaaattatta 15029773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 444
Target Start/End: Original strand, 15659754 - 15659811
Alignment:
Q  387 ccgacacaacaccaacacatataattacattgaattatatgattttgttaaattatta 444  Q
    ||||||| |||||||||||||||||||||  |||||||  |||||| | |||||||||    
T  15659754 ccgacacgacaccaacacatataattacaccgaattatgagattttctcaaattatta 15659811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 444
Target Start/End: Complemental strand, 36635381 - 36635332
Alignment:
Q  395 acaccaacacatataattacattgaattatatgattttgttaaattatta 444  Q
    |||| |||||||||||||||| |||||||| ||||||| | |||||||||    
T  36635381 acacgaacacatataattacactgaattatgtgattttctcaaattatta 36635332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 446
Target Start/End: Complemental strand, 43368154 - 43368085
Alignment:
Q  377 gtgtctgacaccgacacaacaccaacacatataattacattgaattatatgattttgttaaattattatc 446  Q
    ||||||||||||||||| |||||||||||||| || | ||| || | | | ||||| |||||||||||||    
T  43368154 gtgtctgacaccgacacgacaccaacacatatgatcatattaaactgtgtcattttcttaaattattatc 43368085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 377 - 477
Target Start/End: Original strand, 5832678 - 5832778
Alignment:
Q  377 gtgtctgacaccgacacaacaccaacacatataattacattgaattatatgattttgttaaattattatcaatattgacgtgtcagtgtttgtatcgtgt 476  Q
    ||||||||| | ||||| ||||||||||| |||| || | | ||| |||||||||| | ||||||||| || | | ||||||| | ||||||| ||||||    
T  5832678 gtgtctgacgcagacactacaccaacacaaataactatactaaatcatatgattttctcaaattattagcagtgtcgacgtgttaatgtttgtgtcgtgt 5832777  T
Q  477 c 477  Q
    |    
T  5832778 c 5832778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 9e-16; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 387 - 446
Target Start/End: Original strand, 38749557 - 38749616
Alignment:
Q  387 ccgacacaacaccaacacatataattacattgaattatatgattttgttaaattattatc 446  Q
    |||||||||||||||||||||||||||||||||||||| | ||||| | |||||||||||    
T  38749557 ccgacacaacaccaacacatataattacattgaattatgtcattttttcaaattattatc 38749616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 401 - 465
Target Start/End: Original strand, 5467986 - 5468050
Alignment:
Q  401 acacatataattacattgaattatatgattttgttaaattattatcaatattgacgtgtcagtgt 465  Q
    |||| |||||||||| |||||||| ||||||| | |||||||||||  |||||||||||||||||    
T  5467986 acacctataattacactgaattatgtgattttatcaaattattatcggtattgacgtgtcagtgt 5468050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 388 - 444
Target Start/End: Original strand, 15410443 - 15410499
Alignment:
Q  388 cgacacaacaccaacacatataattacattgaattatatgattttgttaaattatta 444  Q
    ||||||||||||||||||||| |||||| ||||| |||| ||||| |||||||||||    
T  15410443 cgacacaacaccaacacatatgattacactgaatcatataattttcttaaattatta 15410499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 377 - 444
Target Start/End: Complemental strand, 18592148 - 18592081
Alignment:
Q  377 gtgtctgacaccgacacaacaccaacacatataattacattgaattatatgattttgttaaattatta 444  Q
    ||||| ||||||||||| |||||  ||||||||||||||||||||||| | ||||| ||||| |||||    
T  18592148 gtgtccgacaccgacacgacaccggcacatataattacattgaattatgtaattttcttaaaatatta 18592081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 393 - 444
Target Start/End: Original strand, 23012408 - 23012459
Alignment:
Q  393 caacaccaacacatataattacattgaattatatgattttgttaaattatta 444  Q
    ||||||| ||||||||||||||||| |||||||||||||| | |||||||||    
T  23012408 caacaccgacacatataattacattaaattatatgattttctcaaattatta 23012459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 389 - 472
Target Start/End: Complemental strand, 39205943 - 39205860
Alignment:
Q  389 gacacaacaccaacacatataattacattgaattatatgattttgttaaattattatcaatattgacgtgtcagtgtttgtatc 472  Q
    ||||| |||||||||||||||||||||   |||||||||||||| | ||||||||| || | | |||||||| |||| ||||||    
T  39205943 gacacgacaccaacacatataattacacctaattatatgattttctcaaattattagcagtgtcgacgtgtccgtgtctgtatc 39205860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 345 - 444
Target Start/End: Complemental strand, 39698647 - 39698549
Alignment:
Q  345 attaggcatgtctcggtctcagatacatgttggtgtctgacaccgacacaacaccaacacatataattacattgaattatatgattttgttaaattatta 444  Q
    ||||||| ||||||||| || ||||||||| | |||| ||||||||||| ||||  |||| | |||||||| |||||||| ||||||| | |||||||||    
T  39698647 attaggcgtgtctcggtgtcggatacatgtcg-tgtccgacaccgacacgacactgacacttgtaattacactgaattatgtgattttttcaaattatta 39698549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 395 - 445
Target Start/End: Original strand, 17925174 - 17925224
Alignment:
Q  395 acaccaacacatataattacattgaattatatgattttgttaaattattat 445  Q
    ||||| |||||||| ||||||||||||||| ||||||| ||||||||||||    
T  17925174 acaccgacacatattattacattgaattatgtgattttcttaaattattat 17925224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 383 - 444
Target Start/End: Original strand, 22423802 - 22423863
Alignment:
Q  383 gacaccgacacaacaccaacacatataattacattgaattatatgattttgttaaattatta 444  Q
    ||||||||||| ||||| ||| ||||||||| |||||||||| ||||||| | |||||||||    
T  22423802 gacaccgacacgacaccgacatatataattatattgaattatgtgattttctcaaattatta 22423863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 401 - 446
Target Start/End: Original strand, 32630743 - 32630788
Alignment:
Q  401 acacatataattacattgaattatatgattttgttaaattattatc 446  Q
    |||||||||||||||||||||||||| ||||| | |||||||||||    
T  32630743 acacatataattacattgaattatataattttctcaaattattatc 32630788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 383 - 444
Target Start/End: Original strand, 32766933 - 32766994
Alignment:
Q  383 gacaccgacacaacaccaacacatataattacattgaattatatgattttgttaaattatta 444  Q
    ||||||||||| |||| ||||||||||||||||||||||| |  |||||| | |||||||||    
T  32766933 gacaccgacacgacacaaacacatataattacattgaattgtgcgattttctcaaattatta 32766994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 444
Target Start/End: Complemental strand, 3966578 - 3966511
Alignment:
Q  377 gtgtctgacaccgacacaacaccaacacatataattacattgaattatatgattttgttaaattatta 444  Q
    ||||| ||||| ||||| ||||| ||||||||||||||| |||||| | ||||||| | |||||||||    
T  3966578 gtgtccgacactgacacgacaccgacacatataattacactgaattgtgtgattttctcaaattatta 3966511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 377 - 431
Target Start/End: Complemental strand, 6035557 - 6035503
Alignment:
Q  377 gtgtctgacaccgacacaacaccaacacatataattacattgaattatatgattt 431  Q
    ||||||| ||||||||| ||||| ||| ||||||||||| |||||||||| ||||    
T  6035557 gtgtctgtcaccgacacgacaccgacaaatataattacactgaattatattattt 6035503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 390 - 444
Target Start/End: Original strand, 6471886 - 6471940
Alignment:
Q  390 acacaacaccaacacatataattacattgaattatatgattttgttaaattatta 444  Q
    |||| ||||| ||||||||||||||| |||||||| ||||||| | |||||||||    
T  6471886 acacgacacccacacatataattacactgaattatgtgattttctcaaattatta 6471940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 446
Target Start/End: Complemental strand, 28296403 - 28296334
Alignment:
Q  377 gtgtctgacaccgacacaacaccaacacatataattacattgaattatatgattttgttaaattattatc 446  Q
    ||||||||||| |  || |||||||||||||| | ||||||||||||| | ||||| | |||||||||||    
T  28296403 gtgtctgacacagggacgacaccaacacatatgagtacattgaattatgtcattttctcaaattattatc 28296334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 476
Target Start/End: Original strand, 42488063 - 42488136
Alignment:
Q  403 acatataattacattgaattatatgattttgttaaattattatcaatattgacgtgtcagtgtttgtatcgtgt 476  Q
    |||| ||||||||||||||||||| ||||| ||||||||| | |  | | ||||||||||||| ||| ||||||    
T  42488063 acatgtaattacattgaattatataattttattaaattatcaacggtgtcgacgtgtcagtgtctgtgtcgtgt 42488136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 408 - 444
Target Start/End: Original strand, 15405070 - 15405106
Alignment:
Q  408 taattacattgaattatatgattttgttaaattatta 444  Q
    ||||||||||||||||||||||||| | |||||||||    
T  15405070 taattacattgaattatatgattttttcaaattatta 15405106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 402 - 466
Target Start/End: Complemental strand, 41600948 - 41600884
Alignment:
Q  402 cacatataattacattgaattatatgattttgttaaattattatcaatattgacgtgtcagtgtt 466  Q
    ||||||| |||| |||||||| | | ||||| | |||||||||||||| ||||||||| ||||||    
T  41600948 cacatatgattatattgaattgtgtaattttctcaaattattatcaatgttgacgtgttagtgtt 41600884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 389 - 444
Target Start/End: Complemental strand, 28913 - 28858
Alignment:
Q  389 gacacaacaccaacacatataattacattgaattatatgattttgttaaattatta 444  Q
    ||||||||||| ||||||||||||||||||||||||  |||||| |||||||||||    
T  28913 gacacaacaccgacacatataattacattgaattatgcgattttcttaaattatta 28858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 385 - 431
Target Start/End: Original strand, 3142070 - 3142116
Alignment:
Q  385 caccgacacaacaccaacacatataattacattgaattatatgattt 431  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||||    
T  3142070 caccgacacaacaccgacacatatgattacattgaattatatgattt 3142116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 377 - 479
Target Start/End: Original strand, 26329366 - 26329468
Alignment:
Q  377 gtgtctgacaccgacacaacaccaacacatataattacattgaattatatgattttgttaaattattatcaatattgacgtgtcagtgtttgtatcgtgt 476  Q
    ||||||||||||||||| || || ||||||||||||||| |||||| | || |||| | ||||||||| | || | | ||||||||||| ||| ||||||    
T  26329366 gtgtctgacaccgacacgacgccgacacatataattacactgaattgtgtgtttttctcaaattattaacgatgtcggcgtgtcagtgtctgtgtcgtgt 26329465  T
Q  477 cca 479  Q
    |||    
T  26329466 cca 26329468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 378 - 446
Target Start/End: Original strand, 3520327 - 3520395
Alignment:
Q  378 tgtctgacaccgacacaacaccaacacatataattacattgaattatatgattttgttaaattattatc 446  Q
    ||||||||||| |||   |||| |||||||||||||||||||||||||||||||| | |||| ||||||    
T  3520327 tgtctgacaccaacatgtcaccgacacatataattacattgaattatatgattttctcaaatgattatc 3520395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 377 - 445
Target Start/End: Complemental strand, 15902897 - 15902829
Alignment:
Q  377 gtgtctgacaccgacacaacaccaacacatataattacattgaattatatgattttgttaaattattat 445  Q
    ||||| || |||||||||||||| ||||||||||||||| | |||||| ||||||| | ||||||||||    
T  15902897 gtgtccgataccgacacaacaccgacacatataattacactaaattatgtgattttatcaaattattat 15902829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 383 - 445
Target Start/End: Original strand, 23128651 - 23128713
Alignment:
Q  383 gacaccgacacaacaccaacacatataattacattgaattatatgattttgttaaattattat 445  Q
    |||||| |||||||||| |||||||| |||||| ||||||||||| |||| | ||||||||||    
T  23128651 gacaccaacacaacaccgacacatatgattacactgaattatatggttttctcaaattattat 23128713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 382 - 448
Target Start/End: Original strand, 44172879 - 44172945
Alignment:
Q  382 tgacaccgacacaacaccaacacatataattacattgaattatatgattttgttaaattattatcaa 448  Q
    ||||||| ||||||||| ||||||| | ||||||||||||||| | ||||| | |||||||||||||    
T  44172879 tgacaccaacacaacacaaacacatgtgattacattgaattatgtcattttctcaaattattatcaa 44172945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 405 - 482
Target Start/End: Complemental strand, 5236033 - 5235956
Alignment:
Q  405 atataattacattgaattatatgattttgttaaattattatcaatattgacgtgtcagtgtttgtatcgtgtccaatg 482  Q
    ||||||||||| | |||||||| ||||| ||||||||||| |  | | ||||||||||||| ||| ||||||||||||    
T  5236033 atataattacactaaattatataattttcttaaattattagcggtgtcgacgtgtcagtgtctgtgtcgtgtccaatg 5235956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 383 - 444
Target Start/End: Complemental strand, 8160485 - 8160424
Alignment:
Q  383 gacaccgacacaacaccaacacatataattacattgaattatatgattttgttaaattatta 444  Q
    ||||||||||| | ||||||||||||||||||| | |||||| | ||||| |||||||||||    
T  8160485 gacaccgacacgataccaacacatataattacactaaattatgtaattttcttaaattatta 8160424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 395 - 444
Target Start/End: Complemental strand, 38143280 - 38143231
Alignment:
Q  395 acaccaacacatataattacattgaattatatgattttgttaaattatta 444  Q
    ||||||||||||||||||||||| |||||| ||||||| | |||||||||    
T  38143280 acaccaacacatataattacattaaattatgtgattttttcaaattatta 38143231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 400 - 444
Target Start/End: Complemental strand, 5956325 - 5956281
Alignment:
Q  400 aacacatataattacattgaattatatgattttgttaaattatta 444  Q
    |||||||||||||||||| |||||| ||||||| |||||||||||    
T  5956325 aacacatataattacattaaattatttgatttttttaaattatta 5956281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 395 - 447
Target Start/End: Complemental strand, 6326754 - 6326702
Alignment:
Q  395 acaccaacacatataattacattgaattatatgattttgttaaattattatca 447  Q
    ||||| ||| ||||||||||||| | |||||||||||| ||||||||||||||    
T  6326754 acaccgacatatataattacatttatttatatgatttttttaaattattatca 6326702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 444
Target Start/End: Complemental strand, 11700876 - 11700811
Alignment:
Q  377 gtgtctgacaccgacacaacaccaacacatataattacattgaattatatgattttgttaaattatta 444  Q
    ||||| |||||||| |||||||  |||||||  ||||||||||||||| ||||||||| |||||||||    
T  11700876 gtgtccgacaccgagacaacacagacacata--attacattgaattatgtgattttgtcaaattatta 11700811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 444
Target Start/End: Complemental strand, 5233692 - 5233637
Alignment:
Q  389 gacacaacaccaacacatataattacattgaattatatgattttgttaaattatta 444  Q
    ||||||||||||||||||||||||||| |  ||||| ||||||| | |||||||||    
T  5233692 gacacaacaccaacacatataattacactagattatgtgattttctcaaattatta 5233637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 444
Target Start/End: Complemental strand, 7438781 - 7438714
Alignment:
Q  377 gtgtctgacaccgacacaacaccaacacatataattacattgaattatatgattttgttaaattatta 444  Q
    |||| |||||||||||  ||||| |||| | ||||||||||||||||| ||||||| | |||||||||    
T  7438781 gtgtttgacaccgacatgacaccgacacttgtaattacattgaattatgtgattttttcaaattatta 7438714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 401 - 444
Target Start/End: Original strand, 8239058 - 8239101
Alignment:
Q  401 acacatataattacattgaattatatgattttgttaaattatta 444  Q
    ||||||||||||||| ||||||||| |||||| |||||||||||    
T  8239058 acacatataattacactgaattataagattttcttaaattatta 8239101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 395 - 469
Target Start/End: Original strand, 23849460 - 23849535
Alignment:
Q  395 acaccaacacatataattacattgaattatatgattttgttaaattattatcaa-tattgacgtgtcagtgtttgt 469  Q
    ||||| ||||||||||||| | |||||||| || |||| ||||||||||||||| | ||| ||||||| |||||||    
T  23849460 acaccgacacatataattatactgaattatgtgtttttcttaaattattatcaagtgttgccgtgtcaatgtttgt 23849535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 444
Target Start/End: Complemental strand, 24339717 - 24339650
Alignment:
Q  377 gtgtctgacaccgacacaacaccaacacatataattacattgaattatatgattttgttaaattatta 444  Q
    ||||| ||||||||||| ||||| |||| | |||||||| |||||||| ||||||| | |||||||||    
T  24339717 gtgtccgacaccgacacgacaccgacacttgtaattacactgaattatgtgattttttcaaattatta 24339650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 401 - 447
Target Start/End: Complemental strand, 12278886 - 12278840
Alignment:
Q  401 acacatataattacattgaattatatgattttgttaaattattatca 447  Q
    ||||||||||||||| |||||||| | ||||| ||||||||||||||    
T  12278886 acacatataattacactgaattatgtcattttcttaaattattatca 12278840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 441
Target Start/End: Complemental strand, 17307958 - 17307904
Alignment:
Q  387 ccgacacaacaccaacacatataattacattgaattatatgattttgttaaatta 441  Q
    ||||||| ||||||||||||||||||||| |||||||| | ||||| | ||||||    
T  17307958 ccgacacgacaccaacacatataattacactgaattatgttattttctcaaatta 17307904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 378 - 444
Target Start/End: Original strand, 26033446 - 26033512
Alignment:
Q  378 tgtctgacaccgacacaacaccaacacatataattacattgaattatatgattttgttaaattatta 444  Q
    |||||||||||||||| | ||| |||| | |||||||| |||||||| ||||||| | |||||||||    
T  26033446 tgtctgacaccgacacgagaccgacacttgtaattacactgaattatgtgattttttcaaattatta 26033512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 390 - 444
Target Start/End: Original strand, 35297669 - 35297723
Alignment:
Q  390 acacaacaccaacacatataattacattgaattatatgattttgttaaattatta 444  Q
    |||| ||||||||||||||||||| | |||||||| ||||||| | |||||||||    
T  35297669 acacgacaccaacacatataattataatgaattatgtgattttctcaaattatta 35297723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 443
Target Start/End: Complemental strand, 3938189 - 3938152
Alignment:
Q  406 tataattacattgaattatatgattttgttaaattatt 443  Q
    ||||||||||||||||||| ||||||| ||||||||||    
T  3938189 tataattacattgaattatgtgatttttttaaattatt 3938152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 444
Target Start/End: Original strand, 7197299 - 7197348
Alignment:
Q  395 acaccaacacatataattacattgaattatatgattttgttaaattatta 444  Q
    ||||| |||| | |||||||||||||||| |||||||| |||||||||||    
T  7197299 acaccgacacttgtaattacattgaattaaatgatttttttaaattatta 7197348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 425
Target Start/End: Original strand, 11744175 - 11744220
Alignment:
Q  380 tctgacaccgacacaacaccaacacatataattacattgaattata 425  Q
    |||||||||||||||| ||  ||||||||||||||| |||||||||    
T  11744175 tctgacaccgacacaatacagacacatataattacactgaattata 11744220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 444
Target Start/End: Original strand, 11890913 - 11890970
Alignment:
Q  387 ccgacacaacaccaacacatataattacattgaattatatgattttgttaaattatta 444  Q
    ||||||| ||||| ||||  ||||||||| |||||||||||||||| | |||||||||    
T  11890913 ccgacacgacacctacactcataattacactgaattatatgattttttcaaattatta 11890970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 444
Target Start/End: Complemental strand, 24146873 - 24146824
Alignment:
Q  395 acaccaacacatataattacattgaattatatgattttgttaaattatta 444  Q
    ||||| ||||||||||||| |||||||||| ||||||| | |||||||||    
T  24146873 acaccgacacatataattatattgaattatgtgattttctaaaattatta 24146824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 448
Target Start/End: Complemental strand, 32855407 - 32855358
Alignment:
Q  399 caacacatataattacattgaattatatgattttgttaaattattatcaa 448  Q
    |||||||||| |||||||| ||||| || ||||| |||||||||||||||    
T  32855407 caacacatatgattacattcaattaaatcattttcttaaattattatcaa 32855358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 432
Target Start/End: Original strand, 33384576 - 33384621
Alignment:
Q  387 ccgacacaacaccaacacatataattacattgaattatatgatttt 432  Q
    ||||||| ||||||||||||||||||||| | ||||||| ||||||    
T  33384576 ccgacaccacaccaacacatataattacactaaattataggatttt 33384621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 445
Target Start/End: Original strand, 36314626 - 36314679
Alignment:
Q  392 acaacaccaacacatataattacattgaattatatgattttgttaaattattat 445  Q
    ||||||||||||||||| ||||||||||| ||| | ||||| | ||||||||||    
T  36314626 acaacaccaacacatatgattacattgaaatatgtcattttctcaaattattat 36314679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 388 - 476
Target Start/End: Original strand, 7328686 - 7328774
Alignment:
Q  388 cgacacaacaccaacacatataattacattgaattatatgattttgttaaattattatcaatattgacgtgtcagtgtttgtatcgtgt 476  Q
    |||||| ||||| ||||||||||||||| | |||||| | ||||| | ||||||||| || ||| ||||||| | ||| ||| ||||||    
T  7328686 cgacacgacaccgacacatataattacactaaattatgttattttctcaaattattagcagtatcgacgtgttaatgtctgtgtcgtgt 7328774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 404 - 444
Target Start/End: Complemental strand, 10377555 - 10377515
Alignment:
Q  404 catataattacattgaattatatgattttgttaaattatta 444  Q
    |||||||||||| |||||||||||||||| ||| |||||||    
T  10377555 catataattacactgaattatatgattttcttatattatta 10377515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 387 - 447
Target Start/End: Complemental strand, 16341561 - 16341501
Alignment:
Q  387 ccgacacaacaccaacacatataattacattgaattatatgattttgttaaattattatca 447  Q
    ||||||| |||||  |||||||||||||| | |||||| ||||||| | ||||||||||||    
T  16341561 ccgacacgacaccggcacatataattacacttaattatgtgattttctcaaattattatca 16341501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 380 - 444
Target Start/End: Complemental strand, 19206122 - 19206058
Alignment:
Q  380 tctgacaccgacacaacaccaacacatataattacattgaattatatgattttgttaaattatta 444  Q
    ||||||||| |||  ||||| ||||||||||||| | |||||||| ||||||| | |||||||||    
T  19206122 tctgacaccaacaagacaccgacacatataattataatgaattatgtgattttctcaaattatta 19206058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 388 - 432
Target Start/End: Original strand, 22602705 - 22602749
Alignment:
Q  388 cgacacaacaccaacacatataattacattgaattatatgatttt 432  Q
    |||||| ||||| ||||||||||||||| |||||||| |||||||    
T  22602705 cgacacgacaccgacacatataattacactgaattatgtgatttt 22602749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 389 - 446
Target Start/End: Complemental strand, 99956 - 99899
Alignment:
Q  389 gacacaacaccaacacatataattacattgaattatatgattttgttaaattattatc 446  Q
    ||||| |||||||||||||||||||||||||||||| | ||||| | |||||||||||    
T  99956 gacacgacaccaacacatataattacattgaattatgttattttctaaaattattatc 99899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 377 - 465
Target Start/End: Original strand, 263356 - 263444
Alignment:
Q  377 gtgtctgacaccgacacaacaccaacacatataattacattgaattatatgattttgttaaattattatcaatattgacgtgtcagtgt 465  Q
    ||||||||||||||||| ||||  |||| |||||||||| |||||||| || |||| | ||||||||| || | ||||| |||||||||    
T  263356 gtgtctgacaccgacacgacactgacacttataattacactgaattatgtggttttctcaaattattagcagtgttgacatgtcagtgt 263444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 390 - 465
Target Start/End: Complemental strand, 4763530 - 4763454
Alignment:
Q  390 acacaacaccaacacatataattacattgaattatatgattttgtt-aaattattatcaatattgacgtgtcagtgt 465  Q
    |||||||| ||||||||||||||| |||||| ||||||||||| || ||||||||| | |||  |||||||||||||    
T  4763530 acacaacaacaacacatataattatattgaactatatgatttttttcaaattattagcgataacgacgtgtcagtgt 4763454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 389 - 476
Target Start/End: Original strand, 18420430 - 18420517
Alignment:
Q  389 gacacaacaccaacacatataattacattgaattatatgattttgttaaattattatcaatattgacgtgtcagtgtttgtatcgtgt 476  Q
    ||||||||||| |||| ||||||| ||||||||||| ||||||| | ||||||||| || | ||| ||||||||| | ||| ||||||    
T  18420430 gacacaacaccgacacttataattgcattgaattatgtgattttctcaaattattagcagtgttggcgtgtcagtatatgtctcgtgt 18420517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 389 - 444
Target Start/End: Complemental strand, 18622669 - 18622614
Alignment:
Q  389 gacacaacaccaacacatataattacattgaattatatgattttgttaaattatta 444  Q
    ||||| |||||||||| |||||||||| |||||||| ||||||| |||||||||||    
T  18622669 gacacgacaccaacacgtataattacactgaattatgtgattttattaaattatta 18622614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 401 - 444
Target Start/End: Complemental strand, 31808128 - 31808085
Alignment:
Q  401 acacatataattacattgaattatatgattttgttaaattatta 444  Q
    ||||||||||||||| |||||||| |||||||||||||||||||    
T  31808128 acacatataattacactgaattatgtgattttgttaaattatta 31808085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 377 - 432
Target Start/End: Complemental strand, 35056943 - 35056888
Alignment:
Q  377 gtgtctgacaccgacacaacaccaacacatataattacattgaattatatgatttt 432  Q
    ||||| ||||||||||| ||||| ||||||||||||||| ||||||||||| ||||    
T  35056943 gtgtccgacaccgacacgacaccgacacatataattacactgaattatatggtttt 35056888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 395 - 444
Target Start/End: Original strand, 34691807 - 34691856
Alignment:
Q  395 acaccaacacatataattacattgaattatatgattttgttaaattatta 444  Q
    ||||| ||||||||||||||| |||||||||||||||| | |||||||||    
T  34691807 acaccgacacatataattacactgaattatatgattttatcaaattatta 34691856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 395 - 444
Target Start/End: Original strand, 34714219 - 34714268
Alignment:
Q  395 acaccaacacatataattacattgaattatatgattttgttaaattatta 444  Q
    ||||| ||||||||||||||| |||||||||||||||| | |||||||||    
T  34714219 acaccgacacatataattacactgaattatatgattttatcaaattatta 34714268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 388 - 444
Target Start/End: Original strand, 17087935 - 17087990
Alignment:
Q  388 cgacacaacaccaacacatataattacattgaattatatgattttgttaaattatta 444  Q
    |||||| ||||||||| |||||||||||| ||||||||| ||||| |||||||||||    
T  17087935 cgacacgacaccaacatatataattacatcgaattatataatttt-ttaaattatta 17087990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 407 - 479
Target Start/End: Original strand, 21782832 - 21782904
Alignment:
Q  407 ataattacattgaattatatgattttgttaaattattatcaatattgacgtgtcagtgtttgtatcgtgtcca 479  Q
    ||||||||| |||||||| ||||||| | ||||||||| || | | | ||||||||||||||| |||||||||    
T  21782832 ataattacactgaattatgtgattttctcaaattattagcagtgtcggcgtgtcagtgtttgtgtcgtgtcca 21782904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 399 - 430
Target Start/End: Complemental strand, 22557014 - 22556983
Alignment:
Q  399 caacacatataattacattgaattatatgatt 430  Q
    ||||||||||||||||||||||||||||||||    
T  22557014 caacacatataattacattgaattatatgatt 22556983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 444
Target Start/End: Original strand, 24975309 - 24975376
Alignment:
Q  377 gtgtctgacaccgacacaacaccaacacatataattacattgaattatatgattttgttaaattatta 444  Q
    ||||||||||| ||||| ||||| || |||||| ||||| ||||||||| |||||| | |||||||||    
T  24975309 gtgtctgacacggacacgacaccgacgcatatatttacactgaattatacgattttctcaaattatta 24975376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 401 - 476
Target Start/End: Complemental strand, 35449564 - 35449489
Alignment:
Q  401 acacatataattacattgaattatatgattttgttaaattattatcaatattgacgtgtcagtgtttgtatcgtgt 476  Q
    ||||||||||||||| |||||| | ||||||| | ||||||||| || | ||| | ||||||||||||| ||||||    
T  35449564 acacatataattacactgaattctgtgattttctcaaattattaacagtgttggcttgtcagtgtttgtgtcgtgt 35449489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 377 - 463
Target Start/End: Original strand, 4882680 - 4882766
Alignment:
Q  377 gtgtctgacaccgacacaacaccaacacatataattacattgaattatatgattttgttaaattattatcaatattgacgtgtcagt 463  Q
    ||||||||||||||||| ||| | |||| | |||||||| |||||||||| ||||| | |||| |||| |  ||| |||||||||||    
T  4882680 gtgtctgacaccgacacgacatcgacacttgtaattacactgaattatatcattttttcaaataattagcggtatcgacgtgtcagt 4882766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 402 - 444
Target Start/End: Original strand, 16069263 - 16069305
Alignment:
Q  402 cacatataattacattgaattatatgattttgttaaattatta 444  Q
    |||| ||||||||| |||||||||||||||| |||||||||||    
T  16069263 cacaaataattacactgaattatatgatttttttaaattatta 16069305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 377 - 431
Target Start/End: Complemental strand, 28524501 - 28524447
Alignment:
Q  377 gtgtctgacaccgacacaacaccaacacatataattacattgaattatatgattt 431  Q
    ||||| |||||| |||||||| | ||||||||||||||| |||||||| ||||||    
T  28524501 gtgtccgacaccaacacaacaacgacacatataattacactgaattatgtgattt 28524447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 395 - 489
Target Start/End: Complemental strand, 37497177 - 37497083
Alignment:
Q  395 acaccaacacatataattacattgaattatatgattttgttaaattattatcaatattgacgtgtcagtgtttgtatcgtgtccaatgactgtgt 489  Q
    ||||| ||| |||| ||||||||||||| |   ||||| | |||||||||||| | | || |||||||||||||| | |||||||||| ||||||    
T  37497177 acaccgacagatattattacattgaattgtggcattttctcaaattattatcagtgtcgatgtgtcagtgtttgttttgtgtccaatgtctgtgt 37497083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 444
Target Start/End: Original strand, 2665881 - 2665939
Alignment:
Q  384 acaccgacacaacaccaacacatataattacattgaattatatgattttgttaaattatta 444  Q
    ||||||||||||||||  |||||||||||||| | |||||| ||||||| | |||||||||    
T  2665881 acaccgacacaacacc--cacatataattacactaaattatgtgattttctaaaattatta 2665939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 383 - 415
Target Start/End: Original strand, 18054793 - 18054825
Alignment:
Q  383 gacaccgacacaacaccaacacatataattaca 415  Q
    ||||||||||| |||||||||||||||||||||    
T  18054793 gacaccgacacgacaccaacacatataattaca 18054825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 377 - 445
Target Start/End: Original strand, 19613597 - 19613665
Alignment:
Q  377 gtgtctgacaccgacacaacaccaacacatataattacattgaattatatgattttgttaaattattat 445  Q
    ||||| ||||||||| | | || ||||||||| ||||||||||||||| | ||||| | ||||||||||    
T  19613597 gtgtccgacaccgacgcgatactaacacatatcattacattgaattatgttattttctcaaattattat 19613665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 388 - 444
Target Start/End: Original strand, 30527590 - 30527646
Alignment:
Q  388 cgacacaacaccaacacatataattacattgaattatatgattttgttaaattatta 444  Q
    |||||| | ||| ||||||||||||||| | |||||||||||||| | |||||||||    
T  30527590 cgacacgataccgacacatataattacactaaattatatgattttctcaaattatta 30527646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 384 - 444
Target Start/End: Complemental strand, 44860388 - 44860328
Alignment:
Q  384 acaccgacacaacaccaacacatataattacattgaattatatgattttgttaaattatta 444  Q
    ||||| |||| ||||| ||||||||||||||| ||||||||  |||||| | |||||||||    
T  44860388 acaccaacacgacaccgacacatataattacactgaattatgcgattttctcaaattatta 44860328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 377 - 444
Target Start/End: Original strand, 9731 - 9798
Alignment:
Q  377 gtgtctgacaccgacacaacaccaacacatataattacattgaattatatgattttgttaaattatta 444  Q
    |||||||||||| |||| ||||| ||||||||||||||| |||||||  ||||||| | |||||||||    
T  9731 gtgtctgacaccaacacgacaccgacacatataattacactgaattaagtgattttctcaaattatta 9798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0376 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0376
Description:

Target: scaffold0376; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 384 - 444
Target Start/End: Complemental strand, 6380 - 6320
Alignment:
Q  384 acaccgacacaacaccaacacatataattacattgaattatatgattttgttaaattatta 444  Q
    ||||||| || ||||| ||||||||||||||||||||||||   ||||||| |||||||||    
T  6380 acaccgatacgacaccgacacatataattacattgaattatgcaattttgtcaaattatta 6320  T

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Target: scaffold0020 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 377 - 443
Target Start/End: Complemental strand, 137855 - 137789
Alignment:
Q  377 gtgtctgacaccgacacaacaccaacacatataattacattgaattatatgattttgttaaattatt 443  Q
    ||||| ||||| ||||| |||||||||||||| | |||| |||||| | ||||||| ||||||||||    
T  137855 gtgtccgacactgacacgacaccaacacatatgactacactgaattgtgtgattttcttaaattatt 137789  T

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Target: scaffold0011 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 395 - 445
Target Start/End: Original strand, 240023 - 240073
Alignment:
Q  395 acaccaacacatataattacattgaattatatgattttgttaaattattat 445  Q
    ||||| |||||||| ||||||||||||||||| ||||| | ||||||||||    
T  240023 acaccgacacatatgattacattgaattatattattttctcaaattattat 240073  T

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Target: scaffold0044 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 443
Target Start/End: Complemental strand, 53254 - 53189
Alignment:
Q  378 tgtctgacaccgacacaacaccaacacatataattacattgaattatatgattttgttaaattatt 443  Q
    |||| |||||||||||  |||| |||| |||||||||| |||||||| ||||||| | ||||||||    
T  53254 tgtccgacaccgacacggcaccgacacttataattacactgaattatgtgattttctcaaattatt 53189  T

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Target: scaffold0123 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 384 - 432
Target Start/End: Original strand, 44516 - 44564
Alignment:
Q  384 acaccgacacaacaccaacacatataattacattgaattatatgatttt 432  Q
    |||||||||| | ||| ||||||||||||||| |||||||| |||||||    
T  44516 acaccgacacgataccgacacatataattacactgaattatgtgatttt 44564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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