View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7894_low_6 (Length: 584)

Name: NF7894_low_6
Description: NF7894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7894_low_6
NF7894_low_6
[»] chr4 (10 HSPs)
chr4 (20-559)||(4623979-4624518)
chr4 (20-336)||(4599651-4599961)
chr4 (337-543)||(4600048-4600254)
chr4 (21-139)||(25038173-25038291)
chr4 (21-139)||(25017068-25017186)
chr4 (441-527)||(25017633-25017719)
chr4 (436-490)||(25189342-25189396)
chr4 (422-526)||(25038721-25038825)
chr4 (436-490)||(25000794-25000848)
chr4 (437-523)||(25046719-25046805)
[»] chr2 (4 HSPs)
chr2 (16-160)||(18804691-18804832)
chr2 (436-540)||(18804062-18804166)
chr2 (438-496)||(7890612-7890670)
chr2 (438-496)||(7897574-7897632)


Alignment Details
Target: chr4 (Bit Score: 508; Significance: 0; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 20 - 559
Target Start/End: Original strand, 4623979 - 4624518
Alignment:
Q  20 tatgacccaataagactcttagattgctctgcagtgaactttggtaacttatctcccacataagacaccaagcttgctggatactctcctgttgtcagtg 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4623979 tatgacccaataagactcttagattgctctgcagtgaactttggtagcttatctcccacataagacaccaagcttgctggatactctcctgttgtcagtg 4624078  T
Q  120 gttgtataaacctgcaaacagataaagaagatttcaaattatacggtcacaattttgtcgcgatccatggttgttgtagaaacggtcaaaaagtatagtt 219  Q
    | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4624079 gctgtataaacctgcaaacagataaagaagattttaaattatacggtcacaattttgtcgcgatccatggttgttgtagaaacggtcaaaaagtatagtt 4624178  T
Q  220 gttaccatccaaacatgaaatcaagggcgtcttcagcggctttttgatctaatgggtcagttgagtatggtttaaaccagtgagagtttaatccaatgcc 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4624179 gttaccatccaaacatgaaatcaagggcgtcttcagcggctttttgatctaatgggtcagttgagtatggtttaaaccagtgagagtttaatccaatgcc 4624278  T
Q  320 tattgcaccattttgagcctgatatgtggttttatacaattcgacaacatctgcatgagcaagaagttggttgtgtgtggacttgtaccaatctgatgta 419  Q
    |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4624279 tattacaccattttgagcctgatatgtggttttatacaattcgaaaacatctgcatgagcaagaagttggttgtgtgtggacttgtaccaatctgatgta 4624378  T
Q  420 ctcaaagtgtaagagaatggttcattaaaagtaacccaatgcttcactctgtctccaaattccttgaagcatatatccacaaagtccttaaaatcttttc 519  Q
    |||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4624379 ctcaaagtgtaagagaatggctcattaaaagtaacccaatgctttacactgtctccaaattccttgaagcatatatccacaaagtccttaaaatcttttc 4624478  T
Q  520 tgcatatagaaattaaacaatcaactatgggaataaaaaa 559  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  4624479 tgcatatagaaattaaacaatcaactatgggaataaaaaa 4624518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 20 - 336
Target Start/End: Original strand, 4599651 - 4599961
Alignment:
Q  20 tatgacccaataagactcttagattgctctgcagtgaactttggtaacttatctcccacataagacaccaagcttgctggatactctcctgttgtcagtg 119  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||||   ||||  |||  ||||||||| | |||||||||||||||| ||||||||||    
T  4599651 tatgacccaataagacttttagattgctcttcagtgaactttggtaa---atctttcacgaaagacaccatgtttgctggatactctccggttgtcagtg 4599747  T
Q  120 gttgtataaacctgcaaacagataaagaagatttcaaattatacggtcacaattttgtcgcgatccatggttgttgtagaaacggtcaaaaagtatagtt 219  Q
    | |||||||||||||||||||||||||||||||| ||||||  | ||||||||||||||| ||||||||||||| ||||||| ||| |||||   ||||     
T  4599748 gctgtataaacctgcaaacagataaagaagattttaaatta--ccgtcacaattttgtcgtgatccatggttgtcgtagaaaaggtaaaaaaag-tagtc 4599844  T
Q  220 gttaccatccaaacatgaaatcaagggcgtcttcagcggctttttgatctaatgggtcagttgagtatggtttaaaccagtgagagtttaatccaatgcc 319  Q
     ||||||||||||||||||||||||||||  ||| | ||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  4599845 attaccatccaaacatgaaatcaagggcgcgttcggtggcttgttgatctaatgggtctgttgagtacggtttaaaccagtgagagtttaatccaatgcc 4599944  T
Q  320 tattgcaccattttgag 336  Q
    |||| |||| |||||||    
T  4599945 tattacaccgttttgag 4599961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 337 - 543
Target Start/End: Original strand, 4600048 - 4600254
Alignment:
Q  337 cctgatatgtggttttatacaattcgacaacatctgcatgagcaagaagttggttgtgtgtggacttgtaccaatctgatgtactcaaagtgtaagagaa 436  Q
    |||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||  ||||| | || |||||||||||||   ||||||||    
T  4600048 cctgatatttggttttatacaattcgacaacagctgcatgagaaagaagttggttgtgtgtggctttgtaacgatgtgatgtactcaaacaataagagaa 4600147  T
Q  437 tggttcattaaaagtaacccaatgcttcactctgtctccaaattccttgaagcatatatccacaaagtccttaaaatcttttctgcatatagaaattaaa 536  Q
    ||| ||||||||||||||||||||||| ||||| ||||||||||| | ||||||||| |||||||||||||||||||| ||||||||  |||||||||||    
T  4600148 tggctcattaaaagtaacccaatgctttactctatctccaaattcttggaagcatatctccacaaagtccttaaaatcatttctgcacgtagaaattaaa 4600247  T
Q  537 caatcaa 543  Q
    |||||||    
T  4600248 caatcaa 4600254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 21 - 139
Target Start/End: Original strand, 25038173 - 25038291
Alignment:
Q  21 atgacccaataagactcttagattgctctgcagtgaactttggtaacttatctcccacataagacaccaagcttgctggatactctcctgttgtcagtgg 120  Q
    |||| ||||||||| ||||||||||||||   ||||||||||||||   || ||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  25038173 atgagccaataagaatcttagattgctctctggtgaactttggtaaacgatttcccacataagacaccatgcttgatggatactctcctgttgtcagtgg 25038272  T
Q  121 ttgtataaacctgcaaaca 139  Q
     || |||||||| ||||||    
T  25038273 ctgcataaacctacaaaca 25038291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 21 - 139
Target Start/End: Original strand, 25017068 - 25017186
Alignment:
Q  21 atgacccaataagactcttagattgctctgcagtgaactttggtaacttatctcccacataagacaccaagcttgctggatactctcctgttgtcagtgg 120  Q
    |||| ||||||||  ||||||||||||||   ||||||||||||||   || |||| || ||||||||| ||||  ||||||||||||||| |||| |||    
T  25017068 atgagccaataagcatcttagattgctctttggtgaactttggtaaacgatttcccgcaaaagacaccatgcttaatggatactctcctgtggtcaatgg 25017167  T
Q  121 ttgtataaacctgcaaaca 139  Q
     || |||||||||||||||    
T  25017168 ctgcataaacctgcaaaca 25017186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 441 - 527
Target Start/End: Original strand, 25017633 - 25017719
Alignment:
Q  441 tcattaaaagtaacccaatgcttcactctgtctccaaattccttgaagcatatatccacaaagtccttaaaatcttttctgcatata 527  Q
    ||||| || |||| |||||||||||||| |||||||||||||||||||||||  ||  || |||||| |||||| ||||||||||||    
T  25017633 tcattgaaggtaatccaatgcttcactcggtctccaaattccttgaagcatagctcggcatagtcctgaaaatcatttctgcatata 25017719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 436 - 490
Target Start/End: Original strand, 25189342 - 25189396
Alignment:
Q  436 atggttcattaaaagtaacccaatgcttcactctgtctccaaattccttgaagca 490  Q
    ||||||| |||||||||||||| | ||||||||| ||||||||||||||||||||    
T  25189342 atggttcgttaaaagtaacccagtacttcactctatctccaaattccttgaagca 25189396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 422 - 526
Target Start/End: Original strand, 25038721 - 25038825
Alignment:
Q  422 caaagtgtaagagaatggttcattaaaagtaacccaatgcttcactctgtctccaaattccttgaagcatatatccacaaagtccttaaaatcttttctg 521  Q
    |||| ||||||||  ||| ||||| || |||| ||||||||||||||| ||||| ||||||||||||||||  ||  || |||| | |||||| ||||||    
T  25038721 caaactgtaagagtgtggctcattgaaggtaatccaatgcttcactctatctccgaattccttgaagcatagctctgcatagtcttgaaaatcatttctg 25038820  T
Q  522 catat 526  Q
    |||||    
T  25038821 catat 25038825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 436 - 490
Target Start/End: Complemental strand, 25000848 - 25000794
Alignment:
Q  436 atggttcattaaaagtaacccaatgcttcactctgtctccaaattccttgaagca 490  Q
    |||||||||| ||||||| |||||| ||||| || || |||||||||||||||||    
T  25000848 atggttcattcaaagtaatccaatgtttcaccctatcgccaaattccttgaagca 25000794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 437 - 523
Target Start/End: Original strand, 25046719 - 25046805
Alignment:
Q  437 tggttcattaaaagtaacccaatgcttcactctgtctccaaattccttgaagcatatatccacaaagtccttaaaatcttttctgca 523  Q
    ||||||||| ||||||  |||| | ||||| || || ||||||||||||||||| | |||  || ||||||||||||| ||||||||    
T  25046719 tggttcattcaaagtagtccaacgtttcaccctatcaccaaattccttgaagcaaagatcagcatagtccttaaaatcatttctgca 25046805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 1e-36; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 16 - 160
Target Start/End: Complemental strand, 18804832 - 18804691
Alignment:
Q  16 atcgtatgacccaataagactcttagattgctctgcagtgaactttggtaacttatctcccacataagacaccaagcttgctggatactctcctgttgtc 115  Q
    ||||||||||||||||||||||| | ||||||||  |||||||||||||||  | ||   || || |||||||| ||||||||| |||||||||||||||    
T  18804832 atcgtatgacccaataagactctcatattgctctttagtgaactttggtaatgtttc---caaattagacaccatgcttgctgggtactctcctgttgtc 18804736  T
Q  116 agtggttgtataaacctgcaaacagataaagaagatttcaaatta 160  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||    
T  18804735 agtggttgtaaaaacctgcaaacagataaagaagattttaaatta 18804691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 436 - 540
Target Start/End: Complemental strand, 18804166 - 18804062
Alignment:
Q  436 atggttcattaaaagtaacccaatgcttcactctgtctccaaattccttgaagcatatatccacaaagtccttaaaatcttttctgcatatagaaattaa 535  Q
    |||| ||||||| ||||| |||||| || ||||||||||||||||||| ||||||||  |||||||||  ||| ||||| | ||||||| ||||||||||    
T  18804166 atggctcattaagagtaatccaatgatttactctgtctccaaattcctcgaagcatacctccacaaagctcttgaaatcatctctgcatgtagaaattaa 18804067  T
Q  536 acaat 540  Q
    |||||    
T  18804066 acaat 18804062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 438 - 496
Target Start/End: Complemental strand, 7890670 - 7890612
Alignment:
Q  438 ggttcattaaaagtaacccaatgcttcactctgtctccaaattccttgaagcatatatc 496  Q
    ||||||||||| || |||||||  ||||||||||||||||| |  ||||||||||||||    
T  7890670 ggttcattaaatgtcacccaatatttcactctgtctccaaagtatttgaagcatatatc 7890612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 438 - 496
Target Start/End: Complemental strand, 7897632 - 7897574
Alignment:
Q  438 ggttcattaaaagtaacccaatgcttcactctgtctccaaattccttgaagcatatatc 496  Q
    ||||||||||| || |||||||  ||||||||||||||||| |  ||||||||||||||    
T  7897632 ggttcattaaatgtcacccaatatttcactctgtctccaaagtatttgaagcatatatc 7897574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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