View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7894_low_7 (Length: 569)
Name: NF7894_low_7
Description: NF7894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7894_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 504; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 19 - 559
Target Start/End: Original strand, 34625057 - 34625609
Alignment:
| Q |
19 |
ctctaatggcagcatcatcagaatccatactcgatcacatccctctctttgccaaagaacttctagccggtggtcttgctggtggctttgctaaaactgt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34625057 |
ctctaatggcagcatcatcagaatccatactcgatcacatccctctctttgccaaagaacttctagccggtggtcttgctggtggctttgctaaaactgt |
34625156 |
T |
|
| Q |
119 |
tgttgctcctcttgaacgtctcaaaattctttttcaggtactttctttaattcttctttttatgtcaagtacaagtactcactcacacataatgagaaaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34625157 |
tgttgctcctcttgaacgtctcaaaattctttttcaggtactttctttaattctcctttttatgtcaagtacaagtactcactcacacataatgagaaaa |
34625256 |
T |
|
| Q |
219 |
tcacacaattctttaatcacaaatgtccgtgctacataccttacttctttgcttttttgttttcgaaatgcttttgtgtgatttcatttaatgtttgatt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34625257 |
tcacacaattctttaatcacaaatgtccgtgctacataccttacttctttgcttttttgttttcgaaatgcttttgtgtgatttcatttaatgtttgatt |
34625356 |
T |
|
| Q |
319 |
aatcttgaatcctagacacttaatgaaataatttagagaatcacaaaatccgagttttgcattcctaagtcctaaccattactgttacataagaggggaa |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34625357 |
aatcttgaatcctagacacttaatgaaataatttagagaatcgcaaaatccgagttttgcattcctaagtcctaaccattactgttacataagaggggaa |
34625456 |
T |
|
| Q |
419 |
cttaactttaactgcttaaactaactcacctgaatcagtaagttagttacagttacagt------------cataaggtaccctatggtaggttctatac |
506 |
Q |
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| T |
34625457 |
cttaactttaactgcttaaactaactcacctgaatcagtaagttagttacagttacagttacagttacagacataaggtaccctatggtaggttctatac |
34625556 |
T |
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| Q |
507 |
tagctagtaaataatgtgatcttggatactatgaagcaccaccaacaccaaac |
559 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34625557 |
tagctagtaaataatgtgatcttggatactatgaagcaccaccaacaccaaac |
34625609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 19 - 485
Target Start/End: Original strand, 34597939 - 34598406
Alignment:
| Q |
19 |
ctctaatggcagcatcatcagaatccatactcgatcacatccctctctttgccaaagaacttctagccggtggtcttgctggtggctttgctaaaactgt |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34597939 |
ctctaatggcagcatcatcagaatccatactcgatcacatccctctctttgccaaagaacttctagccggtggtcttgctggtggctttgctaaaactgt |
34598038 |
T |
|
| Q |
119 |
tgttgctcctcttgaacgtctcaaaattctttttcaggtactttctttaattcttctttttatgtcaagtacaagtactcactcacacataatgagaaaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34598039 |
tgttgctcctcttgaacgtctcaaaattctttttcaggtactttctttaattctcctttttatgtcaagtacaagtactcactcacacataatgagaaaa |
34598138 |
T |
|
| Q |
219 |
tcacacaattctttaatcacaaatgtccgtgctacataccttacttctttgcttttttgttttcgaaatgcttttgtgtgatttcatttaatgtttgatt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34598139 |
tcacacaattctttaatcacaaatgtccgtgctacataccttacttctttgcttttttgttttcgaaatgcttttgtgtgatttcatttaatgtttgatt |
34598238 |
T |
|
| Q |
319 |
aatcttgaatcctagacacttaatgaaataatttagagaatcacaaaatccgagttttgcatt-cctaagtcctaaccattactgttacataagagggga |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||| |
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| T |
34598239 |
aatcttgaatcctagacacttaatgaaataatttagagaatcacaaaatccgagttttgcattccctaagtcctaaccattacttttacataaaagggga |
34598338 |
T |
|
| Q |
418 |
acttaactttaactgcttaaactaactcacctgaatcagtaagttagttacagttacagtcataaggt |
485 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
34598339 |
acttaactttaactgcttaaactaactcacctgaatcagtaagttagttacagttacagacataaggt |
34598406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 422 - 546
Target Start/End: Original strand, 11539189 - 11539317
Alignment:
| Q |
422 |
aactttaactgcttaaactaactcacctgaatcagt----aagttagttacagttacagtcataaggtaccctatggtaggttctatactagctagtaaa |
517 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||| |||||||||||||| |||||| |
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| T |
11539189 |
aactttaactgcttaaactaactcacctgaatcagttagtaagttagttacagatacagacataaggtaccctatggttggttctatactagcaagtaaa |
11539288 |
T |
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| Q |
518 |
taatgtgatcttggatactatgaagcacc |
546 |
Q |
| |
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||||||||||||| |||||||||||||| |
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| T |
11539289 |
taatgtgatcttgactactatgaagcacc |
11539317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 521 - 559
Target Start/End: Original strand, 34598406 - 34598444
Alignment:
| Q |
521 |
tgtgatcttggatactatgaagcaccaccaacaccaaac |
559 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||| |
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| T |
34598406 |
tgtgatcttggatactatgaagcaccacccacaccaaac |
34598444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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