View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7894_low_8 (Length: 558)

Name: NF7894_low_8
Description: NF7894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7894_low_8
NF7894_low_8
[»] chr1 (13 HSPs)
chr1 (16-333)||(2094366-2094681)
chr1 (437-547)||(2094208-2094321)
chr1 (258-337)||(11821159-11821238)
chr1 (256-332)||(3792557-3792633)
chr1 (257-332)||(39650194-39650269)
chr1 (259-339)||(37260911-37260991)
chr1 (260-340)||(42883751-42883831)
chr1 (257-314)||(5602942-5602999)
chr1 (256-333)||(35392108-35392185)
chr1 (271-333)||(35391487-35391549)
chr1 (259-332)||(33617644-33617717)
chr1 (259-312)||(49033755-49033808)
chr1 (259-315)||(3792296-3792352)
[»] chr5 (15 HSPs)
chr5 (258-429)||(17644507-17644679)
chr5 (355-436)||(7164274-7164355)
chr5 (259-338)||(11135741-11135820)
chr5 (259-320)||(6636919-6636980)
chr5 (327-436)||(1145776-1145886)
chr5 (257-315)||(3458012-3458070)
chr5 (257-314)||(25787864-25787921)
chr5 (257-321)||(34017635-34017699)
chr5 (263-334)||(30491798-30491869)
chr5 (256-338)||(6158942-6159023)
chr5 (259-341)||(25760509-25760591)
chr5 (289-338)||(3759583-3759632)
chr5 (253-334)||(6702364-6702445)
chr5 (355-404)||(40266539-40266588)
chr5 (258-334)||(36580222-36580298)
[»] chr3 (15 HSPs)
chr3 (456-529)||(53782276-53782349)
chr3 (259-436)||(54528855-54529034)
chr3 (258-332)||(6162687-6162761)
chr3 (259-332)||(44833470-44833543)
chr3 (256-337)||(47064861-47064942)
chr3 (246-333)||(30533882-30533969)
chr3 (259-321)||(4969875-4969937)
chr3 (258-332)||(53827666-53827740)
chr3 (258-338)||(11342889-11342969)
chr3 (259-331)||(53814567-53814639)
chr3 (258-333)||(3539667-3539742)
chr3 (259-332)||(15040681-15040754)
chr3 (259-304)||(44430418-44430463)
chr3 (259-332)||(44836483-44836556)
chr3 (260-304)||(13843626-13843670)
[»] chr2 (8 HSPs)
chr2 (255-337)||(37893008-37893090)
chr2 (259-321)||(22788001-22788063)
chr2 (257-332)||(18387239-18387314)
chr2 (257-310)||(5037297-5037350)
chr2 (259-332)||(8273245-8273318)
chr2 (259-320)||(19984720-19984781)
chr2 (259-332)||(12967270-12967344)
chr2 (259-315)||(20685006-20685062)
[»] chr6 (11 HSPs)
chr6 (255-332)||(35060900-35060977)
chr6 (259-332)||(14153354-14153427)
chr6 (255-334)||(31522538-31522617)
chr6 (355-416)||(807122-807183)
chr6 (259-333)||(23608427-23608501)
chr6 (259-339)||(14430944-14431024)
chr6 (259-340)||(14431471-14431552)
chr6 (259-332)||(17436546-17436619)
chr6 (255-332)||(32275776-32275853)
chr6 (406-457)||(806687-806739)
chr6 (253-333)||(23608983-23609063)
[»] chr8 (10 HSPs)
chr8 (258-318)||(37687331-37687391)
chr8 (258-334)||(43640976-43641052)
chr8 (259-337)||(23558983-23559061)
chr8 (259-331)||(35841397-35841469)
chr8 (258-332)||(33220792-33220866)
chr8 (256-332)||(31762238-31762314)
chr8 (258-304)||(9418586-9418632)
chr8 (259-332)||(5967242-5967315)
chr8 (260-321)||(9384617-9384678)
chr8 (258-315)||(33220023-33220079)
[»] chr4 (12 HSPs)
chr4 (259-338)||(27992303-27992382)
chr4 (257-332)||(33164510-33164585)
chr4 (259-337)||(38677662-38677740)
chr4 (259-337)||(36217870-36217948)
chr4 (259-332)||(36172165-36172238)
chr4 (259-310)||(37576543-37576594)
chr4 (259-337)||(38676939-38677017)
chr4 (262-332)||(24974151-24974221)
chr4 (259-337)||(54208180-54208258)
chr4 (262-315)||(40312816-40312869)
chr4 (262-315)||(40322892-40322945)
chr4 (259-320)||(54209066-54209127)
[»] chr7 (9 HSPs)
chr7 (254-333)||(26009364-26009443)
chr7 (259-332)||(38790884-38790958)
chr7 (355-404)||(149051-149100)
chr7 (259-314)||(42548161-42548216)
chr7 (259-337)||(26011953-26012031)
chr7 (259-320)||(28138759-28138820)
chr7 (262-332)||(5177-5247)
chr7 (254-332)||(1537251-1537329)
chr7 (256-337)||(30359702-30359781)
[»] scaffold1063 (1 HSPs)
scaffold1063 (257-332)||(1473-1548)
[»] scaffold0262 (1 HSPs)
scaffold0262 (259-338)||(8384-8463)
[»] scaffold1763 (1 HSPs)
scaffold1763 (259-337)||(364-442)


Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 16 - 333
Target Start/End: Complemental strand, 2094681 - 2094366
Alignment:
Q  16 cctccttctacaaattttatcgcattttacctaatgaattttccctgtctcttcactcgcatctactttttattttatcttnnnnnnnngacattcaata 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||        |||||||||||    
T  2094681 cctccttctacaaattttatcgcattttacctaatgaattttccctgtctctccactcgcatctactttttattttatcttcaaaaaaagacattcaata 2094582  T
Q  116 tctgaaatgatactcgacgacactttgaaaaataacagaaaa--cacgtgaagatttgacaaaacaaatttgattaggaatgatatgatcacctatttaa 213  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  2094581 tctgaaatgatactcgacgacactttgaaaaataacagaaaaaacacatgaagattttacaaaacaaatttgattaggaatgatatgatcacctatttaa 2094482  T
Q  214 caagttcttaactttttcactctcatatataacgtacaattttttgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaa 313  Q
    ||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||| ||||    
T  2094481 caagttcttaactttttcactctc----ataacgtacaattttttgaattctgctcattacccaaattgttctgctcatttccaaagtaaatgtctaaaa 2094386  T
Q  314 tatccctatgcatgttaact 333  Q
    |||||||| |||| ||||||    
T  2094385 tatccctacgcatattaact 2094366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 437 - 547
Target Start/End: Complemental strand, 2094321 - 2094208
Alignment:
Q  437 ttaacttacgctggttttgtttctcttaaaggccagcagcctggtccaatccaagtggggtgtggtc--aaatatacattactacacaagcaacaacaa- 533  Q
    |||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||  ||||||||||||||| ||||||||||||||     
T  2094321 ttaactcacgctggttttgtttctcataaaagccagcagcctggtccaatccaagtggggtgtgatcaaaaatatacattactatacaagcaacaacaac 2094222  T
Q  534 ccaagaataatata 547  Q
    ||||||||||||||    
T  2094221 ccaagaataatata 2094208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 258 - 337
Target Start/End: Original strand, 11821159 - 11821238
Alignment:
Q  258 tgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaacttacg 337  Q
    |||||||||||||||| ||||||||||  ||||||| |||||||||| |||||||||   ||||||||||||||||||||    
T  11821159 tgaattctgctcattatccaaatggtttcgttcattcccaaagtaaaagtccaaaatgctcctatgcatgttaacttacg 11821238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 256 - 332
Target Start/End: Original strand, 3792557 - 3792633
Alignment:
Q  256 tttgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaac 332  Q
    ||||||||||||||||||||||||| |||  | |||||||||||||||| |||||||||  || || ||||||||||    
T  3792557 tttgaattctgctcattacccaaatagtttcgctcatttccaaagtaaaagtccaaaatgcccttacgcatgttaac 3792633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 257 - 332
Target Start/End: Original strand, 39650194 - 39650269
Alignment:
Q  257 ttgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaac 332  Q
    ||||||||||||||||||| ||||||||  | ||||| | ||||||||||||||||||  ||||| ||||||||||    
T  39650194 ttgaattctgctcattacctaaatggtttcgctcattcctaaagtaaatgtccaaaatgcccctacgcatgttaac 39650269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 259 - 339
Target Start/End: Complemental strand, 37260991 - 37260911
Alignment:
Q  259 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaacttacgca 339  Q
    ||||| ||||| ||||||||| |||| ||  ||||  |||||||||||||||||||  ||||||||||||||||| |||||    
T  37260991 gaattatgctctttacccaaacggttttgcccattctcaaagtaaatgtccaaaatgcccctatgcatgttaactcacgca 37260911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 260 - 340
Target Start/End: Complemental strand, 42883831 - 42883751
Alignment:
Q  260 aattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaacttacgcaa 340  Q
    |||| ||||| ||| | |||||||| || ||||||| ||| |||||||||||||||||||||  |||||||||| ||||||    
T  42883831 aattatgctctttagctaaatggttttgctcatttctaaaataaatgtccaaaatatccctacacatgttaactcacgcaa 42883751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 257 - 314
Target Start/End: Original strand, 5602942 - 5602999
Alignment:
Q  257 ttgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaat 314  Q
    ||||||||||||| |||||||||||| | || ||||| |||||||||||| |||||||    
T  5602942 ttgaattctgctctttacccaaatggatttgctcattcccaaagtaaatgaccaaaat 5602999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 256 - 333
Target Start/End: Complemental strand, 35392185 - 35392108
Alignment:
Q  256 tttgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaact 333  Q
    |||||| ||||||| |||||||||| ||| || ||||| ||||||||||||| |||||||   ||| |||||||||||    
T  35392185 tttgaactctgctctttacccaaattgttttgctcattcccaaagtaaatgttcaaaatacttctacgcatgttaact 35392108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 271 - 333
Target Start/End: Original strand, 35391487 - 35391549
Alignment:
Q  271 ttacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaact 333  Q
    ||||| ||||||||  ||||||| |||||||||||||||||||||  | || |||||||||||    
T  35391487 ttacctaaatggtttcgttcattcccaaagtaaatgtccaaaatactcatacgcatgttaact 35391549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 332
Target Start/End: Original strand, 33617644 - 33617717
Alignment:
Q  259 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaac 332  Q
    ||||| |||||||||||||||||| |  | |||||  ||||||||||| || ||||  ||||||||||||||||    
T  33617644 gaattatgctcattacccaaatggattcgctcattctcaaagtaaatgaccgaaatgcccctatgcatgttaac 33617717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 312
Target Start/End: Complemental strand, 49033808 - 49033755
Alignment:
Q  259 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaa 312  Q
    |||||||||||||||  |||||||||  | ||||| ||||||||||||||||||    
T  49033808 gaattctgctcattattcaaatggttccgctcattcccaaagtaaatgtccaaa 49033755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 259 - 315
Target Start/End: Original strand, 3792296 - 3792352
Alignment:
Q  259 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaata 315  Q
    ||||||||||||||||||||||| || |  |||||  |||| |||||||||||||||    
T  3792296 gaattctgctcattacccaaatgattctactcattctcaaaataaatgtccaaaata 3792352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 6e-26; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 258 - 429
Target Start/End: Complemental strand, 17644679 - 17644507
Alignment:
Q  258 tgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaacttacgcaacataag-tatgtcatgc 356  Q
    |||||| ||||||||||| |||||| |  | ||||| ||||||||||||||||||||| ||||| ||||||||| | |||||| | ||| ||  ||| ||    
T  17644679 tgaattgtgctcattaccgaaatggattcgctcattcccaaagtaaatgtccaaaatacccctacgcatgttaattcacgcaataaaagttaactcacgc 17644580  T
Q  357 tagtgttaaattttcgtgagttaattcacgctgcatgacttaagtcacacaaaagaaaaacacactaaaaccc 429  Q
    ||||||||||||| | |||||||| ||||||||| |||||||| |||| || || ||  ||||||||||||||    
T  17644579 tagtgttaaatttacatgagttaactcacgctgcgtgacttaaatcacgcagaaaaatcacacactaaaaccc 17644507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 355 - 436
Target Start/End: Original strand, 7164274 - 7164355
Alignment:
Q  355 gctagtgttaaattttcgtgagttaattcacgctgcatgacttaagtcacacaaaagaaaaacacactaaaacccagcgtga 436  Q
    |||| |||||||||| | ||||||||||||||| || ||||||||||||| || || ||| ||||||||||||||| |||||    
T  7164274 gctaatgttaaatttgcatgagttaattcacgccgcgtgacttaagtcacgcagaaaaaacacacactaaaacccaacgtga 7164355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 259 - 338
Target Start/End: Original strand, 11135741 - 11135820
Alignment:
Q  259 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaacttacgc 338  Q
    ||||| ||||| ||||||||||| ||  | ||||||||||| |||||| |||||||| ||||| ||||||||||||||||    
T  11135741 gaattatgctctttacccaaatgatttcgctcatttccaaaataaatgaccaaaatacccctacgcatgttaacttacgc 11135820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 259 - 320
Target Start/End: Complemental strand, 6636980 - 6636919
Alignment:
Q  259 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccct 320  Q
    ||||||||||||||| |||||||  |||||||||| ||||| |||||| |||||||||||||    
T  6636980 gaattctgctcattatccaaatgaatatgttcattcccaaaataaatgaccaaaatatccct 6636919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 327 - 436
Target Start/End: Complemental strand, 1145886 - 1145776
Alignment:
Q  327 gttaacttacgcaacataagt-atgtcatgctagtgttaaattttcgtgagttaattcacgctgcatgacttaagtcacacaaaagaaaaacacactaaa 425  Q
    |||||||||||| |||| ||| |  ||| |||| ||| |||||| | |||||||| ||||||||| || |||||||||| || || ||| |||||| |||    
T  1145886 gttaacttacgctacattagttaactcacgctaatgtaaaatttgcatgagttaactcacgctgcgtgtcttaagtcacgcagaaaaaatacacaccaaa 1145787  T
Q  426 acccagcgtga 436  Q
    |||||||||||    
T  1145786 acccagcgtga 1145776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 257 - 315
Target Start/End: Original strand, 3458012 - 3458070
Alignment:
Q  257 ttgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaata 315  Q
    ||||||||||||||||||| |||  ||  || |||||||||||||||||||||||||||    
T  3458012 ttgaattctgctcattaccgaaaccgtattgctcatttccaaagtaaatgtccaaaata 3458070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 257 - 314
Target Start/End: Complemental strand, 25787921 - 25787864
Alignment:
Q  257 ttgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaat 314  Q
    ||||||||||||| ||| ||||| ||||||| ||||||||||| |||||| |||||||    
T  25787921 ttgaattctgctctttatccaaacggttatgctcatttccaaaataaatgaccaaaat 25787864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 321
Target Start/End: Complemental strand, 34017699 - 34017635
Alignment:
Q  257 ttgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatcccta 321  Q
    |||||||||||||||||| |||||||||  | |||||| ||||||||||| || ||||| |||||    
T  34017699 ttgaattctgctcattactcaaatggttccgctcattttcaaagtaaatgaccgaaataccccta 34017635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 263 - 334
Target Start/End: Complemental strand, 30491869 - 30491798
Alignment:
Q  263 tctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaactt 334  Q
    |||||||||||||||||||  |  | ||||| |||||||||| ||| ||||| |||||| ||||||||||||    
T  30491869 tctgctcattacccaaatgaattcgctcattcccaaagtaaaagtcgaaaatgtccctacgcatgttaactt 30491798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 256 - 338
Target Start/End: Complemental strand, 6159023 - 6158942
Alignment:
Q  256 tttgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaacttacgc 338  Q
    |||||||||||||||||||  |||||| |  | ||||| |||||||||||||| |||||| ||||| | ||||||||| ||||    
T  6159023 tttgaattctgctcattacttaaatggattcgctcattcccaaagtaaatgtctaaaata-ccctacgtatgttaactcacgc 6158942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 259 - 341
Target Start/End: Complemental strand, 25760591 - 25760509
Alignment:
Q  259 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaacttacgcaac 341  Q
    ||||||||||| ||||||||| ||||||| || || | ||||||||||  |||||||||||| ||   ||||||| |||||||    
T  25760591 gaattctgctctttacccaaacggttatgctcgttccaaaagtaaatgatcaaaatatccctgtgtgagttaactcacgcaac 25760509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 338
Target Start/End: Complemental strand, 3759632 - 3759583
Alignment:
Q  289 tcatttccaaagtaaatgtccaaaatatccctatgcatgttaacttacgc 338  Q
    ||||||||||| |||||| |||||||| |||||| |||||||||| ||||    
T  3759632 tcatttccaaaataaatgaccaaaataaccctattcatgttaactcacgc 3759583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 334
Target Start/End: Original strand, 6702364 - 6702445
Alignment:
Q  253 ttttttgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaactt 334  Q
    |||||||||||||||||||| ||||||| |||  | |||||  ||||||||| ||| |||||  || || ||||||||||||    
T  6702364 ttttttgaattctgctcattgcccaaatagtttcgctcattctcaaagtaaaagtcaaaaatgcccatacgcatgttaactt 6702445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 404
Target Start/End: Complemental strand, 40266588 - 40266539
Alignment:
Q  355 gctagtgttaaattttcgtgagttaattcacgctgcatgacttaagtcac 404  Q
    |||| |||||||||| |||||||||| ||||||| | |||||||||||||    
T  40266588 gctaatgttaaatttgcgtgagttaactcacgctacgtgacttaagtcac 40266539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 258 - 334
Target Start/End: Original strand, 36580222 - 36580298
Alignment:
Q  258 tgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaactt 334  Q
    |||||||||||||||||  ||||||||  | | ||||| ||| |||| || |||||||||||||  |||||||||||    
T  36580222 tgaattctgctcattacttaaatggttccgcttatttctaaaataaaagttcaaaatatccctacacatgttaactt 36580298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 4e-24; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 456 - 529
Target Start/End: Complemental strand, 53782349 - 53782276
Alignment:
Q  456 tttctcttaaaggccagcagcctggtccaatccaagtggggtgtggtcaaatatacattactacacaagcaaca 529  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  53782349 tttctcttaaaaggcagcagcctggtccaatccaagtggggtgtggtcaaagatacattactatacaagcaaca 53782276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 259 - 436
Target Start/End: Complemental strand, 54529034 - 54528855
Alignment:
Q  259 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaacttacgcaacataag-tatgtcatgct 357  Q
    ||||||||||| ||||| ||||| || || |||||  ||| |||||||||||||||| |||||  |||||||||| ||||||| | || ||  |||  ||    
T  54529034 gaattctgctctttaccaaaatgattttgctcattctcaatgtaaatgtccaaaatacccctacacatgttaactcacgcaacctgagttaattcacact 54528935  T
Q  358 agtgttaaattttcgtgagttaattcacgctgcatgacttaagtcacac-aaaagaaaaacacactaaaacccagcgtga 436  Q
    | ||||||||||  | ||||||| ||||| | ||||||||||||| ||| |||| ||||||| |||||||||||||||||    
T  54528934 aatgttaaatttgtgggagttaactcacgtttcatgacttaagtcgcacaaaaaaaaaaacaaactaaaacccagcgtga 54528855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 258 - 332
Target Start/End: Complemental strand, 6162761 - 6162687
Alignment:
Q  258 tgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaac 332  Q
    |||||||||||||||||||||||||||  | ||||| |||||||||| |||||||||  ||||| ||||||||||    
T  6162761 tgaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaac 6162687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 259 - 332
Target Start/End: Original strand, 44833470 - 44833543
Alignment:
Q  259 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaac 332  Q
    ||||||||||||||||||||||||||  ||| |||||||||||||| |||||||||  ||||| |||| |||||    
T  44833470 gaattctgctcattacccaaatggttccgtttatttccaaagtaaaagtccaaaatgcccctacgcatattaac 44833543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 256 - 337
Target Start/End: Original strand, 47064861 - 47064942
Alignment:
Q  256 tttgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaacttacg 337  Q
    |||||||| ||||||||||||||||| || || ||||| |||||||||| |||||||||   |||| |||||||||||||||    
T  47064861 tttgaattatgctcattacccaaatgattctgctcattcccaaagtaaaagtccaaaatgctcctacgcatgttaacttacg 47064942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 246 - 333
Target Start/End: Complemental strand, 30533969 - 30533882
Alignment:
Q  246 cgtacaattttttgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaact 333  Q
    |||| |||| |||||||||||||| |||| | || |||| || |||||| |||||||||| ||||||||| |||||  ||||||||||    
T  30533969 cgtaaaattctttgaattctgctctttactcgaacggttttgctcattttcaaagtaaatatccaaaatacccctacacatgttaact 30533882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 259 - 321
Target Start/End: Original strand, 4969875 - 4969937
Alignment:
Q  259 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatcccta 321  Q
    ||||||||||||||||||||||||||  | ||||| |||||||||| ||| |||||| |||||    
T  4969875 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtcgaaaataccccta 4969937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 258 - 332
Target Start/End: Complemental strand, 53827740 - 53827666
Alignment:
Q  258 tgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaac 332  Q
    |||||||||||||||||| |||| ||   | ||||| ||||||||||||||||||||  ||||| ||||||||||    
T  53827740 tgaattctgctcattacctaaatagtatcgctcattcccaaagtaaatgtccaaaatgcccctacgcatgttaac 53827666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 258 - 338
Target Start/End: Original strand, 11342889 - 11342969
Alignment:
Q  258 tgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaacttacgc 338  Q
    |||||||||||||||   |||||||||  ||||||| |||||||||| ||||||||   ||||| ||||||||| ||||||    
T  11342889 tgaattctgctcattgttcaaatggttccgttcattcccaaagtaaaagtccaaaaagcccctacgcatgttaatttacgc 11342969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 259 - 331
Target Start/End: Complemental strand, 53814639 - 53814567
Alignment:
Q  259 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaa 331  Q
    |||||||||||||||||||||||| |  | ||||| ||||||||||||  ||||||  ||||| |||||||||    
T  53814639 gaattctgctcattacccaaatggattcgctcattcccaaagtaaatgatcaaaatgcccctacgcatgttaa 53814567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 258 - 333
Target Start/End: Original strand, 3539667 - 3539742
Alignment:
Q  258 tgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaact 333  Q
    |||||| ||||| ||| |||||||||| || ||||||||||| ||||||  ||||||| |||||  ||||||||||    
T  3539667 tgaattatgctctttatccaaatggttttgctcatttccaaaataaatgatcaaaatagccctacacatgttaact 3539742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 332
Target Start/End: Original strand, 15040681 - 15040754
Alignment:
Q  259 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaac 332  Q
    |||||||||||||||||||||||| |  | ||||| |||||||||||| |  ||||  ||||| ||||||||||    
T  15040681 gaattctgctcattacccaaatggattcgctcattcccaaagtaaatgactgaaatgcccctacgcatgttaac 15040754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 304
Target Start/End: Original strand, 44430418 - 44430463
Alignment:
Q  259 gaattctgctcattacccaaatggttatgttcatttccaaagtaaa 304  Q
    ||||||||||||||| |||||||||| || ||||| ||||||||||    
T  44430418 gaattctgctcattatccaaatggttttgctcattcccaaagtaaa 44430463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 332
Target Start/End: Complemental strand, 44836556 - 44836483
Alignment:
Q  259 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaac 332  Q
    ||||||||||||||| | ||||||||  | ||||||| |||||||||||||| | |  ||||| ||||||||||    
T  44836556 gaattctgctcattatctaaatggttccgctcatttctaaagtaaatgtccatattgcccctacgcatgttaac 44836483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 260 - 304
Target Start/End: Complemental strand, 13843670 - 13843626
Alignment:
Q  260 aattctgctcattacccaaatggttatgttcatttccaaagtaaa 304  Q
    |||||||||||||||||||||||||  | ||||| ||||||||||    
T  13843670 aattctgctcattacccaaatggtttcgctcattcccaaagtaaa 13843626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 6e-20; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 255 - 337
Target Start/End: Complemental strand, 37893090 - 37893008
Alignment:
Q  255 ttttgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaacttacg 337  Q
    |||||||||||||| |||||||||||||||  | ||||| |||||||||| |||||||||  |||||||||||||||||||||    
T  37893090 ttttgaattctgctaattacccaaatggtttcgctcattcccaaagtaaaagtccaaaatgcccctatgcatgttaacttacg 37893008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 259 - 321
Target Start/End: Complemental strand, 22788063 - 22788001
Alignment:
Q  259 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatcccta 321  Q
    ||||||||||| |||||||||||| | |||||||| |||||||||||| |||||||| |||||    
T  22788063 gaattctgctctttacccaaatggatttgttcattcccaaagtaaatgaccaaaataccccta 22788001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 257 - 332
Target Start/End: Original strand, 18387239 - 18387314
Alignment:
Q  257 ttgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaac 332  Q
    |||||||||||||||||| ||||||||| || ||||| ||||||||||| || |||||  || || ||||||||||    
T  18387239 ttgaattctgctcattactcaaatggttctgctcattcccaaagtaaatatcaaaaatgcccttacgcatgttaac 18387314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 257 - 310
Target Start/End: Original strand, 5037297 - 5037350
Alignment:
Q  257 ttgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtcca 310  Q
    ||||||||||||| ||||| ||| |||| ||||| |||||||||||||||||||    
T  5037297 ttgaattctgctctttaccaaaacggttttgttcgtttccaaagtaaatgtcca 5037350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 259 - 332
Target Start/End: Original strand, 8273245 - 8273318
Alignment:
Q  259 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaac 332  Q
    |||||||||||||||||||||||| |  | ||||| |||||||||||| || ||||  ||||| ||||||||||    
T  8273245 gaattctgctcattacccaaatggattcgctcattcccaaagtaaatgaccgaaatgcccctacgcatgttaac 8273318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 259 - 320
Target Start/End: Complemental strand, 19984781 - 19984720
Alignment:
Q  259 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccct 320  Q
    ||||||||||| ||||||||| ||||||| || |||| |||||||||| |||||||| ||||    
T  19984781 gaattctgctctttacccaaacggttatgctcgtttctaaagtaaatgaccaaaatacccct 19984720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 259 - 332
Target Start/End: Original strand, 12967270 - 12967344
Alignment:
Q  259 gaattctgctcattacccaaatggttatgttcatttccaaagt-aaatgtccaaaatatccctatgcatgttaac 332  Q
    ||||||||||||||||| ||||||||  | |||||  |||||| ||| |||||||||| ||||| ||||||||||    
T  12967270 gaattctgctcattacctaaatggttccgctcattctcaaagtaaaaagtccaaaatacccctacgcatgttaac 12967344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 259 - 315
Target Start/End: Original strand, 20685006 - 20685062
Alignment:
Q  259 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaata 315  Q
    ||||||||||||||||||||||||||  | |||||  ||||||||| ||| ||||||    
T  20685006 gaattctgctcattacccaaatggttccgctcattctcaaagtaaaagtctaaaata 20685062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 255 - 332
Target Start/End: Complemental strand, 35060977 - 35060900
Alignment:
Q  255 ttttgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaac 332  Q
    ||||||||||||||||||||||||||| ||  | ||||||||||||||||||||||||||  ||||| ||||||||||    
T  35060977 ttttgaattctgctcattacccaaatgattccgctcatttccaaagtaaatgtccaaaatgcccctacgcatgttaac 35060900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 259 - 332
Target Start/End: Original strand, 14153354 - 14153427
Alignment:
Q  259 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaac 332  Q
    ||||||||||||||||||||||| || || ||||| |||||||||||| |||||||| ||||| ||||||||||    
T  14153354 gaattctgctcattacccaaatgattttgctcattcccaaagtaaatgaccaaaatacccctacgcatgttaac 14153427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 255 - 334
Target Start/End: Complemental strand, 31522617 - 31522538
Alignment:
Q  255 ttttgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaactt 334  Q
    ||||||||||||||||||||||||||||||  | ||||| |||||||||||| || ||||  ||||| ||| ||||||||    
T  31522617 ttttgaattctgctcattacccaaatggttccgctcattcccaaagtaaatgaccgaaatgcccctacgcaagttaactt 31522538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 355 - 416
Target Start/End: Complemental strand, 807183 - 807122
Alignment:
Q  355 gctagtgttaaattttcgtgagttaattcacgctgcatgacttaagtcacacaaaagaaaaa 416  Q
    ||||||||||||||| |||||||||| |||| |||| ||||||||||||| ||||| |||||    
T  807183 gctagtgttaaatttgcgtgagttaactcacactgcgtgacttaagtcacgcaaaaaaaaaa 807122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 259 - 333
Target Start/End: Original strand, 23608427 - 23608501
Alignment:
Q  259 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaact 333  Q
    |||||||||||||||  |||||| ||  ||||||| ||||| |||| ||| |||||||||||| |||||||||||    
T  23608427 gaattctgctcattattcaaatgattccgttcattcccaaaataaaagtctaaaatatccctacgcatgttaact 23608501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 259 - 339
Target Start/End: Original strand, 14430944 - 14431024
Alignment:
Q  259 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaacttacgca 339  Q
    ||||||||||  ||||| ||| |||| || ||||||| |||||||||||  ||||| |||||| ||||||||||| |||||    
T  14430944 gaattctgctatttacctaaacggttctgctcatttctaaagtaaatgtttaaaatgtccctacgcatgttaactcacgca 14431024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 340
Target Start/End: Complemental strand, 14431552 - 14431471
Alignment:
Q  259 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaacttacgcaa 340  Q
    ||||||| ||| |||| |||| |||| |||||||| | ||||||||||| ||||| |||||||   ||||||||| ||||||    
T  14431552 gaattctactctttacacaaacggttttgttcattcctaaagtaaatgttcaaaacatccctacatatgttaactcacgcaa 14431471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 332
Target Start/End: Complemental strand, 17436619 - 17436546
Alignment:
Q  259 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaac 332  Q
    |||||||||||||||||||||||| |  | || || |||||||||||| || |||| ||||||  |||||||||    
T  17436619 gaattctgctcattacccaaatggattcgctcgttcccaaagtaaatgaccgaaatgtccctacacatgttaac 17436546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 332
Target Start/End: Complemental strand, 32275853 - 32275776
Alignment:
Q  255 ttttgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaac 332  Q
    ||||||||| ||||||||| ||||||||||  | ||||| |||||||||||| |  ||||  ||||||||| ||||||    
T  32275853 ttttgaattatgctcattatccaaatggttccgctcattcccaaagtaaatgactgaaatgcccctatgcaagttaac 32275776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 406 - 457
Target Start/End: Original strand, 806687 - 806739
Alignment:
Q  406 caaaagaaaaacacactaaaacccagcgtga-ttaacttacgctggttttgtt 457  Q
    ||||| ||||||||||| ||||||| ||||| |||||| ||||||||||||||    
T  806687 caaaaaaaaaacacactgaaacccaacgtgagttaactcacgctggttttgtt 806739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 253 - 333
Target Start/End: Complemental strand, 23609063 - 23608983
Alignment:
Q  253 ttttttgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaact 333  Q
    |||||||||||||| ||||||| ||||||||| |  ||||| | ||| |||| || |||||||  ||| ||||||||||||    
T  23609063 ttttttgaattctggtcattactcaaatggttcttctcattcctaaaataaaagttcaaaatactcctctgcatgttaact 23608983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 258 - 318
Target Start/End: Complemental strand, 37687391 - 37687331
Alignment:
Q  258 tgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatcc 318  Q
    ||||||||||| |||||||||||||||  | ||||||||||||||||||||||||||||||    
T  37687391 tgaattctgcttattacccaaatggttccgctcatttccaaagtaaatgtccaaaatatcc 37687331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 258 - 334
Target Start/End: Complemental strand, 43641052 - 43640976
Alignment:
Q  258 tgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaactt 334  Q
    |||||||||||||||||||||||||||  | ||||||||||||||||||  |||| |  ||||| ||||||||||||    
T  43641052 tgaattctgctcattacccaaatggtttggctcatttccaaagtaaatgatcaaattgcccctacgcatgttaactt 43640976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 259 - 337
Target Start/End: Complemental strand, 23559061 - 23558983
Alignment:
Q  259 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaacttacg 337  Q
    ||||||||||||||| ||||||||||  | ||||| |||| ||||| |||||||||  ||||| |||||||||||||||    
T  23559061 gaattctgctcattatccaaatggttccgctcattgccaaggtaaaagtccaaaatgcccctacgcatgttaacttacg 23558983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 259 - 331
Target Start/End: Original strand, 35841397 - 35841469
Alignment:
Q  259 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaa 331  Q
    ||||||||||| ||||| |||  ||| || ||||||  ||||||||||||||||||||||||| |||||||||    
T  35841397 gaattctgctctttaccaaaacagttgtgctcatttttaaagtaaatgtccaaaatatccctacgcatgttaa 35841469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 258 - 332
Target Start/End: Complemental strand, 33220866 - 33220792
Alignment:
Q  258 tgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaac 332  Q
    |||||||||||||||||||||||||||    ||||| |||||||||| || ||||||  ||||| ||||||||||    
T  33220866 tgaattctgctcattacccaaatggtttcactcattcccaaagtaaaagttcaaaatgcccctacgcatgttaac 33220792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 256 - 332
Target Start/End: Original strand, 31762238 - 31762314
Alignment:
Q  256 tttgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaac 332  Q
    ||||||||||||||||||  ||||||| |  | ||||| |||||||||||   | ||||||||||||||||||||||    
T  31762238 tttgaattctgctcattattcaaatggattcgctcattcccaaagtaaataaacgaaatatccctatgcatgttaac 31762314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 258 - 304
Target Start/End: Original strand, 9418586 - 9418632
Alignment:
Q  258 tgaattctgctcattacccaaatggttatgttcatttccaaagtaaa 304  Q
    |||||||||||||||||||||||||||  | ||||| ||||||||||    
T  9418586 tgaattctgctcattacccaaatggtttcgctcattcccaaagtaaa 9418632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 332
Target Start/End: Complemental strand, 5967315 - 5967242
Alignment:
Q  259 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaac 332  Q
    |||||||||||||||||||||||| |  | ||||| ||||||||||||  | ||||  ||||| ||||||||||    
T  5967315 gaattctgctcattacccaaatggattcgctcattcccaaagtaaatgatcgaaatgcccctacgcatgttaac 5967242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 321
Target Start/End: Original strand, 9384617 - 9384678
Alignment:
Q  260 aattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatcccta 321  Q
    ||||||||||||||  |||||||||  | |||||| |||| |||||||||||||| ||||||    
T  9384617 aattctgctcattattcaaatggttccgctcattttcaaaataaatgtccaaaatgtcccta 9384678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 315
Target Start/End: Original strand, 33220023 - 33220079
Alignment:
Q  258 tgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaata 315  Q
    |||||||||||||||| ||||||||||  | ||| ||||||||||||||| |||||||    
T  33220023 tgaattctgctcattatccaaatggttccgctca-ttccaaagtaaatgttcaaaata 33220079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 9e-16; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 259 - 338
Target Start/End: Complemental strand, 27992382 - 27992303
Alignment:
Q  259 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaacttacgc 338  Q
    ||||| || ||||||||||||||| | || ||||||| ||| ||||||||||||||| ||||||||||||||||| ||||    
T  27992382 gaattatgttcattacccaaatggatttgctcatttctaaaataaatgtccaaaatacccctatgcatgttaactcacgc 27992303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 257 - 332
Target Start/End: Complemental strand, 33164585 - 33164510
Alignment:
Q  257 ttgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaac 332  Q
    ||||||||||||||||||||||||||||  | |||||  |||||||||||||||||||  ||||| ||||||||||    
T  33164585 ttgaattctgctcattacccaaatggttccgctcattctcaaagtaaatgtccaaaatgcccctacgcatgttaac 33164510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 259 - 337
Target Start/End: Complemental strand, 38677740 - 38677662
Alignment:
Q  259 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaacttacg 337  Q
    ||||||||||| ||||||||| | || |||||||| ||||||||||| | ||||||||||||  |||||||||||||||    
T  38677740 gaattctgctctttacccaaacgattttgttcattcccaaagtaaatattcaaaatatccctgcgcatgttaacttacg 38677662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 259 - 337
Target Start/End: Original strand, 36217870 - 36217948
Alignment:
Q  259 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaacttacg 337  Q
    ||||||||||| |||| ||||||||| |  ||||| |||||||||| |||||||||  ||||| |||||||||||||||    
T  36217870 gaattctgctctttactcaaatggttttactcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacttacg 36217948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 259 - 332
Target Start/End: Original strand, 36172165 - 36172238
Alignment:
Q  259 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaac 332  Q
    |||||||||||||||||||||| |||    ||||| |||||||||| |||||||||| ||||||| ||||||||    
T  36172165 gaattctgctcattacccaaatagttccactcattcccaaagtaaaagtccaaaatacccctatgtatgttaac 36172238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 259 - 310
Target Start/End: Original strand, 37576543 - 37576594
Alignment:
Q  259 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtcca 310  Q
    ||||||||||||||||||||| |||| || || |||||||||||||||||||    
T  37576543 gaattctgctcattacccaaacggttttgctcgtttccaaagtaaatgtcca 37576594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 259 - 337
Target Start/End: Original strand, 38676939 - 38677017
Alignment:
Q  259 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaacttacg 337  Q
    ||||||| ||| ||| ||||| |||| || ||||| ||||| ||||||||||||||| | ||| |||||||||||||||    
T  38676939 gaattctcctctttatccaaacggttttgctcattcccaaaataaatgtccaaaatacctctacgcatgttaacttacg 38677017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 262 - 332
Target Start/End: Complemental strand, 24974221 - 24974151
Alignment:
Q  262 ttctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaac 332  Q
    |||||||||||| |||||||| | || ||||| |||||||||||| || ||||  ||||| ||||||||||    
T  24974221 ttctgctcattatccaaatggatttgctcattcccaaagtaaatgaccgaaatgcccctacgcatgttaac 24974151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 259 - 337
Target Start/End: Original strand, 54208180 - 54208258
Alignment:
Q  259 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaacttacg 337  Q
    ||||| ||||| ||| |||||||||| || ||||| ||||||||||||  ||||||| |||||  || |||||||||||    
T  54208180 gaattatgctctttatccaaatggttttgctcattcccaaagtaaatgatcaaaatacccctactcaagttaacttacg 54208258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 315
Target Start/End: Complemental strand, 40312869 - 40312816
Alignment:
Q  262 ttctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaata 315  Q
    |||||||||||||||||||| ||  | |||||||||||||||| ||| ||||||    
T  40312869 ttctgctcattacccaaatgatttcgctcatttccaaagtaaaagtctaaaata 40312816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 315
Target Start/End: Complemental strand, 40322945 - 40322892
Alignment:
Q  262 ttctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaata 315  Q
    |||||||||||||||||||| ||  | |||||||||||||||| ||| ||||||    
T  40322945 ttctgctcattacccaaatgatttcgctcatttccaaagtaaaagtctaaaata 40322892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 320
Target Start/End: Complemental strand, 54209127 - 54209066
Alignment:
Q  259 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccct 320  Q
    ||||||||||| ||| | ||| ||||||||||||| ||||||||||||| || | |||||||    
T  54209127 gaattctgctctttatctaaacggttatgttcattcccaaagtaaatgttcatattatccct 54209066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 254 - 333
Target Start/End: Original strand, 26009364 - 26009443
Alignment:
Q  254 tttttgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaact 333  Q
    |||| ||||||||||| ||||||||| | || || ||||| |||||||||||| ||||||||| |||| |||||||||||    
T  26009364 ttttcgaattctgctctttacccaaacgattttgctcattcccaaagtaaatgaccaaaatattcctacgcatgttaact 26009443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 259 - 332
Target Start/End: Original strand, 38790884 - 38790958
Alignment:
Q  259 gaattctgctcattacccaaatggttatgttcattt-ccaaagtaaatgtccaaaatatccctatgcatgttaac 332  Q
    ||||||||||||||| ||||||||||  | |||||| |||||||||| |||||||||| ||||| ||||||||||    
T  38790884 gaattctgctcattatccaaatggtttcgctcattttccaaagtaaaagtccaaaatacccctacgcatgttaac 38790958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 355 - 404
Target Start/End: Original strand, 149051 - 149100
Alignment:
Q  355 gctagtgttaaattttcgtgagttaattcacgctgcatgacttaagtcac 404  Q
    ||||||||||||||| |||||||||| ||||| |||||||||||||||||    
T  149051 gctagtgttaaatttgcgtgagttaagtcacgttgcatgacttaagtcac 149100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 259 - 314
Target Start/End: Original strand, 42548161 - 42548216
Alignment:
Q  259 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaat 314  Q
    |||||||||||||||||||||| ||| || ||||| |||||||||| |||||||||    
T  42548161 gaattctgctcattacccaaatcgttttgctcattcccaaagtaaaagtccaaaat 42548216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 259 - 337
Target Start/End: Complemental strand, 26012031 - 26011953
Alignment:
Q  259 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaacttacg 337  Q
    ||||||||||| ||||||||| | || |  |||||  ||||||||||| |||||||| | |||||||||||||||||||    
T  26012031 gaattctgctctttacccaaacgattttaatcattctcaaagtaaatgaccaaaatacctctatgcatgttaacttacg 26011953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 259 - 320
Target Start/End: Original strand, 28138759 - 28138820
Alignment:
Q  259 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccct 320  Q
    ||||||||||| ||||||||||| || || ||||| |||||||||||| |||||||| ||||    
T  28138759 gaattctgctctttacccaaatgattttgctcattcccaaagtaaatgaccaaaatacccct 28138820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 262 - 332
Target Start/End: Complemental strand, 5247 - 5177
Alignment:
Q  262 ttctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaac 332  Q
    ||||||||||||||||||||| |  | ||||| |||||||||||| || ||||  ||||| ||||||||||    
T  5247 ttctgctcattacccaaatggattcgctcattcccaaagtaaatgaccgaaatgcccctacgcatgttaac 5177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 254 - 332
Target Start/End: Complemental strand, 1537329 - 1537251
Alignment:
Q  254 tttttgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaac 332  Q
    ||||||||||||||||||||||||||  ||   |||||||  |||||||||||| ||||||  ||||  ||||||||||    
T  1537329 tttttgaattctgctcattacccaaacagtatcgttcattctcaaagtaaatgttcaaaatgcccctgcgcatgttaac 1537251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 256 - 337
Target Start/End: Original strand, 30359702 - 30359781
Alignment:
Q  256 tttgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaacttacg 337  Q
    |||||||||||||| ||||||||   |||  | ||||| |||||||||| ||||||||  ||||||||| ||||||||||||    
T  30359702 tttgaattctgctctttacccaac--gttccgctcattcccaaagtaaaagtccaaaacgtccctatgcttgttaacttacg 30359781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1063 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold1063
Description:

Target: scaffold1063; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 257 - 332
Target Start/End: Original strand, 1473 - 1548
Alignment:
Q  257 ttgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaac 332  Q
    ||||||||||||||||||||||||||||  | ||||||  |||||||| |||||||||  ||||  ||||||||||    
T  1473 ttgaattctgctcattacccaaatggttccgctcatttttaaagtaaaagtccaaaatgcccctgcgcatgttaac 1548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 338
Target Start/End: Original strand, 8384 - 8463
Alignment:
Q  259 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaacttacgc 338  Q
    ||||||||||| ||||||||| | || || ||||||| |||||||||||  |||||| || || ||||||||||| ||||    
T  8384 gaattctgctctttacccaaacgtttctgctcatttctaaagtaaatgtgtaaaatacccttacgcatgttaactcacgc 8463  T

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Target: scaffold1763 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold1763
Description:

Target: scaffold1763; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 259 - 337
Target Start/End: Complemental strand, 442 - 364
Alignment:
Q  259 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaacttacg 337  Q
    ||||| ||||| ||||||||||||||  | ||||| ||||||||||  ||| ||||  || ||||||||||||||||||    
T  442 gaattatgctctttacccaaatggtttcgctcattcccaaagtaaaaatcccaaatgcccttatgcatgttaacttacg 364  T

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