View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7894_low_9 (Length: 539)
Name: NF7894_low_9
Description: NF7894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7894_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 16 - 461
Target Start/End: Original strand, 42484011 - 42484456
Alignment:
| Q |
16 |
atgaacagcaactaagatattgacttgtttcgttatcttaccttatattaatctatatgctagtatagactatggaccacatcatatcaatttctgtctt |
115 |
Q |
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| T |
42484011 |
atgaacagcaactaagatattgacttgtttcgttatcttacctcatattaatctatatgctagtatagactatggaccacatcatatcaatttctgtctt |
42484110 |
T |
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| Q |
116 |
tgctattgctatatagtatcatatcataaattttattttattggaccataatatatgataataataggtcatgctcttgaccatctcatccaaccacctc |
215 |
Q |
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| T |
42484111 |
tgctattgctatatagtatcatatcataaattttattttattggaccataatatatgataataataggtcatgctcttgaccatctcatccaaccacctc |
42484210 |
T |
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| Q |
216 |
ctttttgattgagaatatcttccaccatatcttatctatggaagaatgtgaaaatcgtacttagtatatacacttcaattttatctgtcacaatcgcacc |
315 |
Q |
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| T |
42484211 |
ctttttgattgagaatatcttccaccatatcttatctatggaagaatgtgaaaatcgtacttagtatatacacttcaattttatctgtcacaatcgcacc |
42484310 |
T |
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| Q |
316 |
ttccctctgaatgggaacacacatcatcaccttgaacagtcaattttctaatttcaatatttaattttggtacctatacctatatgtatattctatagtg |
415 |
Q |
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| T |
42484311 |
ttccctctgaatgggaacacacatcatcaccttgaacagtcaattttctaatttcaatatttaattttggtacctatacctatatgtatattctatagtg |
42484410 |
T |
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| Q |
416 |
tcttaatcgtcaaataaatataaataatctactatagtatattaaa |
461 |
Q |
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| T |
42484411 |
tcttaatcgtcaaataaatataaataatctactatagtatattaaa |
42484456 |
T |
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