View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7895_high_2 (Length: 294)
Name: NF7895_high_2
Description: NF7895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7895_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 24059298 - 24059148
Alignment:
| Q |
1 |
caaaattgacattctttactttcggccaccaaaaggaataaaactttactttatgcagcaactgaggtatgaaattttctaaggaaatagcatcctatat |
100 |
Q |
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| T |
24059298 |
caaaattgacattctttactttcggccaccaaaagaaataaaactttactttatgcagcaactgaggtatgaaattttctaaggaaatagcatcctatat |
24059199 |
T |
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| Q |
101 |
ttttgttaaat----agatttttattatcatatttttagtagttacatttc |
147 |
Q |
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| T |
24059198 |
ttttgttaaatagatagatttttattatcatatttttagtagttacatttc |
24059148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 163 - 284
Target Start/End: Complemental strand, 24059072 - 24058951
Alignment:
| Q |
163 |
aatcaaaattaattccatgttggttgactagctctcaccaataatttcatttactatgattttcaatcacaattaaattccatacgtttctgttctcttt |
262 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24059072 |
aatcaaaattaattccatgttggttgactagctctcaccaataatttcatttactatgattttcaatcacaattaaattccatacgtttctgttctcttt |
24058973 |
T |
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| Q |
263 |
tacagccttatcttcatctctc |
284 |
Q |
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|||||||| |||||||| |||| |
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| T |
24058972 |
tacagcctcatcttcatttctc |
24058951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 163 - 266
Target Start/End: Original strand, 24275092 - 24275194
Alignment:
| Q |
163 |
aatcaaaattaattccatgttggttgactagctctcaccaataatttcatttactatgattttcaatcacaattaaattccatacgtttctgttctcttt |
262 |
Q |
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||||||||||||||||| |||| | |||| |||||||| |||||||||||||||||||||||| ||||| | |||||||||||||||| | |||||||| |
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| T |
24275092 |
aatcaaaattaattccaggttgatggacttgctctcacaaataatttcatttactatgattttaaatcatca-taaattccatacgtttttcttctcttt |
24275190 |
T |
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| Q |
263 |
taca |
266 |
Q |
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|||| |
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| T |
24275191 |
taca |
24275194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 80 - 150
Target Start/End: Original strand, 24274953 - 24275024
Alignment:
| Q |
80 |
taaggaaatagcatcctatatttttgttaaata-gatttttattatcatatttttagtagttacatttcctc |
150 |
Q |
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||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||| ||||| |||||||| |
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| T |
24274953 |
taaggaaatagcatcctatatctttgttaaatagggtttttattatcatatttttagaagttatatttcctc |
24275024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 13230422 - 13230495
Alignment:
| Q |
1 |
caaaattgacattctttactttcggccaccaaaaggaataaaactttactttatgcagcaactgaggtatgaaa |
74 |
Q |
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| T |
13230422 |
caaaattggcattctttactttcaaccaccaaatagaataaaacttaaatttatccaacaactgaggcatgaaa |
13230495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 2418366 - 2418419
Alignment:
| Q |
1 |
caaaattgacattctttactttcggccaccaaaaggaataaaactttactttat |
54 |
Q |
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|||||||| |||| ||| ||||| |||||||||||||||||||||| ||||||| |
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| T |
2418366 |
caaaattggcattttttgctttcagccaccaaaaggaataaaacttaactttat |
2418419 |
T |
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