View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7895_low_1 (Length: 336)

Name: NF7895_low_1
Description: NF7895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7895_low_1
NF7895_low_1
[»] chr4 (10 HSPs)
chr4 (18-336)||(43441649-43441967)
chr4 (18-336)||(22904893-22905208)
chr4 (18-336)||(22956561-22956876)
chr4 (18-130)||(4913682-4913794)
chr4 (20-151)||(52116480-52116611)
chr4 (210-328)||(52116621-52116739)
chr4 (132-205)||(1466802-1466875)
chr4 (157-216)||(1611224-1611283)
chr4 (157-199)||(55353131-55353173)
chr4 (153-202)||(44645345-44645394)
[»] chr1 (3 HSPs)
chr1 (23-328)||(24722131-24722436)
chr1 (153-205)||(28060726-28060778)
chr1 (162-202)||(32774569-32774609)
[»] chr5 (1 HSPs)
chr5 (20-328)||(27408437-27408745)
[»] chr8 (1 HSPs)
chr8 (20-334)||(30503308-30503622)
[»] chr3 (3 HSPs)
chr3 (154-225)||(51041829-51041900)
chr3 (157-201)||(12220564-12220608)
chr3 (159-201)||(7425062-7425104)
[»] chr2 (1 HSPs)
chr2 (153-202)||(15316226-15316275)
[»] chr6 (1 HSPs)
chr6 (158-202)||(1033871-1033915)


Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 18 - 336
Target Start/End: Original strand, 43441649 - 43441967
Alignment:
Q  18 gacacctcacaatgcaaaaagagatgagacgttgtctcctccatctcaccacatagcacacaaacacaaggtttcccgggagccaaaactttccggtgcc 117  Q
    ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| || |||||||||||| ||||||||||    
T  43441649 gacacctcacaatgcaaaaagagatgagacgttttctcctccatttcaccacatagcacacaaacacaaggttccctgggagccaaaacattccggtgcc 43441748  T
Q  118 taagattattccttgtcggaatacggtccctcaaggccatccaagaaaaagccacaactttggacggagccggactcttccaaagattggaaaacacctc 217  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  43441749 taagattagtccttgtcggaatacggtccctcaaggccatccaagaaaaagccacgactttggacggagccggactcttccaaagattggaaaacacctc 43441848  T
Q  218 ctcctctaaagcactcaacccttcttgatggatcacaccctcctccaaaactctataagaggagcgcaccttatacttatcactctcctccggcaaccac 317  Q
    |||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||     
T  43441849 ctcctctaaaccactcaacccttcttggtggagcacaccctcctccaaaactctataagaggagcgcaccgtatacttaccaccctcctccggcaaccaa 43441948  T
Q  318 acccacctatcttcttctc 336  Q
     |||||||||| |||||||    
T  43441949 tcccacctatcctcttctc 43441967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 336
Target Start/End: Original strand, 22904893 - 22905208
Alignment:
Q  18 gacacctcacaatgcaaaaagagatgagacgttgtctcctccatctcaccacatagcacacaaacacaaggtttcccgggagccaaaactttccggtgcc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||  || ||||||    
T  22904893 gacacctcacaatgcaaaaagagatgagacgttgtctcctccatctcaccacaaagcacacaaacacaaggttccccgggagccaaaacactctggtgcc 22904992  T
Q  118 taagattattccttgtcggaatacggtccctcaaggccatccaagaaaaagccacaactttggacggagccggactcttccaaagattggaaaacacctc 217  Q
    ||||||||  ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||   |    
T  22904993 taagattagcccttgtcggaatacggtccatcaaggccatccaagaaaaagccacgactttggacggagccggactcttccaaagattagcaaaca---c 22905089  T
Q  218 ctcctctaaagcactcaacccttcttgatggatcacaccctcctccaaaactctataagaggagcgcaccttatacttatcactctcctccggcaaccac 317  Q
    |||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||| |||| ||| ||| ||||||| |||||||     
T  22905090 ctcctctaaaacactcaacccttgttgatggagcacaccctcctccaaaactctataagaggaacgcaccgtatatttaccaccctcctccagcaaccaa 22905189  T
Q  318 acccacctatcttcttctc 336  Q
    ||||||||||| |||||||    
T  22905190 acccacctatcctcttctc 22905208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 336
Target Start/End: Original strand, 22956561 - 22956876
Alignment:
Q  18 gacacctcacaatgcaaaaagagatgagacgttgtctcctccatctcaccacatagcacacaaacacaaggtttcccgggagccaaaactttccggtgcc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||  || ||||||    
T  22956561 gacacctcacaatgcaaaaagagatgagacgttgtctcctccatctcaccacaaagcacacaaacacaaggttccccgggagccaaaacactctggtgcc 22956660  T
Q  118 taagattattccttgtcggaatacggtccctcaaggccatccaagaaaaagccacaactttggacggagccggactcttccaaagattggaaaacacctc 217  Q
    ||||||||  ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||   |    
T  22956661 taagattagcccttgtcggaatacggtccatcaaggccatccaagaaaaagccacgactttggacggagccggactcttccaaagattagcaaaca---c 22956757  T
Q  218 ctcctctaaagcactcaacccttcttgatggatcacaccctcctccaaaactctataagaggagcgcaccttatacttatcactctcctccggcaaccac 317  Q
    |||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||| |||| ||| ||| ||||||| |||||||     
T  22956758 ctcctctaaaacactcaacccttgttgatggagcacaccctcctccaaaactctataagaggaacgcaccgtatatttaccaccctcctccagcaaccaa 22956857  T
Q  318 acccacctatcttcttctc 336  Q
    ||||||||||| |||||||    
T  22956858 acccacctatcctcttctc 22956876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 18 - 130
Target Start/End: Original strand, 4913682 - 4913794
Alignment:
Q  18 gacacctcacaatgcaaaaagagatgagacgttgtctcctccatctcaccacatagcacacaaacacaaggtttcccgggagccaaaactttccggtgcc 117  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||    
T  4913682 gacacctcgcaatgcacaaagagatgagacgttgtctcctccatctcaccacatagcacacaaacacaaggttccccaggagccaaaacattccggtgcc 4913781  T
Q  118 taagattattcct 130  Q
    |||||||| ||||    
T  4913782 taagattagtcct 4913794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 20 - 151
Target Start/End: Original strand, 52116480 - 52116611
Alignment:
Q  20 cacctcacaatgcaaaaagagatgagacgttgtctcctccatctcaccacatagcacacaaacacaaggtttcccgggagccaaaactttccggtgccta 119  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||| || | |||||||||||||| |||||| ||||||||  ||  ||||| |    
T  52116480 cacctcacaatgcaaaaagagatgagacgttgtctcctccatatcaccacaaagaatacaaacacaaggttccccgggggccaaaacactctagtgccca 52116579  T
Q  120 agattattccttgtcggaatacggtccctcaa 151  Q
    || |||  ||||||||||||||||||| ||||    
T  52116580 aggttagcccttgtcggaatacggtccatcaa 52116611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 210 - 328
Target Start/End: Original strand, 52116621 - 52116739
Alignment:
Q  210 aacacctcctcctctaaagcactcaacccttcttgatggatcacaccctcctccaaaactctataagaggagcgcaccttatacttatcactctcctccg 309  Q
    ||||||||||||||||   | |||||||||||||| ||||  |||||||||||||||||  |||||||||| |||||| |||||||||||| ||||||||    
T  52116621 aacacctcctcctctaggacgctcaacccttcttggtggagaacaccctcctccaaaaccttataagaggaacgcaccgtatacttatcaccctcctccg 52116720  T
Q  310 gcaaccacacccacctatc 328  Q
    ||||||| ||||| |||||    
T  52116721 gcaaccaaacccaactatc 52116739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 132 - 205
Target Start/End: Original strand, 1466802 - 1466875
Alignment:
Q  132 gtcggaatacggtccctcaaggccatccaagaaaaagccacaactttggacggagccggactcttccaaagatt 205  Q
    ||||||||||||||    |||||||||||||||||||| || |||||||| |||||| ||||| ||||||||||    
T  1466802 gtcggaatacggtctaggaaggccatccaagaaaaagcaaccactttggatggagccagactcctccaaagatt 1466875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 216
Target Start/End: Complemental strand, 1611283 - 1611224
Alignment:
Q  157 tccaagaaaaagccacaactttggacggagccggactcttccaaagattggaaaacacct 216  Q
    ||||||| || ||||| ||||||||||| |||||||| ||||||| ||| ||||||||||    
T  1611283 tccaagagaaggccaccactttggacggtgccggacttttccaaatatttgaaaacacct 1611224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 199
Target Start/End: Complemental strand, 55353173 - 55353131
Alignment:
Q  157 tccaagaaaaagccacaactttggacggagccggactcttcca 199  Q
    |||| |||||| |||||||||||||||| ||||||||||||||    
T  55353173 tccatgaaaaaaccacaactttggacggtgccggactcttcca 55353131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 202
Target Start/End: Complemental strand, 44645394 - 44645345
Alignment:
Q  153 gccatccaagaaaaagccacaactttggacggagccggactcttccaaag 202  Q
    |||| ||||||||||||||| || ||||| ||||||| ||||||||||||    
T  44645394 gccagccaagaaaaagccaccaccttggatggagccgaactcttccaaag 44645345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 154; Significance: 1e-81; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 23 - 328
Target Start/End: Complemental strand, 24722436 - 24722131
Alignment:
Q  23 ctcacaatgcaaaaagagatgagacgttgtctcctccatctcaccacatagcacacaaacacaaggtttcccgggagccaaaactttccggtgcctaaga 122  Q
    ||||||||||| |||||||||||| || |||||||||||||||||||| ||||||||||||||| | | |||||| ||||||||  | |||||||||||     
T  24722436 ctcacaatgcagaaagagatgagatgtagtctcctccatctcaccacaaagcacacaaacacaaagatccccgggggccaaaacacttcggtgcctaagg 24722337  T
Q  123 ttattccttgtcggaatacggtccctcaaggccatccaagaaaaagccacaactttggacggagccggactcttccaaagattggaaaacacctcctcct 222  Q
    |||  |||||||| |||||| ||| |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||  ||||||||||||||    
T  24722336 ttagcccttgtcgaaatacgatccatcaaggccatccaagaaaaagccacaactttggagggagtcggactcttccaaagattgtcaaacacctcctcct 24722237  T
Q  223 ctaaagcactcaacccttcttgatggatcacaccctcctccaaaactctataagaggagcgcaccttatacttatcactctcctccggcaaccacaccca 322  Q
    ||||  ||||||||||||||||| | |  ||| | ||||||||||||||||||||||| ||||||  | ||||| ||| ||||||||||| ||| |||||    
T  24722236 ctaacacactcaacccttcttgaagaagaacatcatcctccaaaactctataagaggaccgcaccgaaaacttaccaccctcctccggcacccaaaccca 24722137  T
Q  323 cctatc 328  Q
     |||||    
T  24722136 actatc 24722131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 205
Target Start/End: Original strand, 28060726 - 28060778
Alignment:
Q  153 gccatccaagaaaaagccacaactttggacggagccggactcttccaaagatt 205  Q
    ||||||||||| || |||||  |||| ||||||||||||||||||||||||||    
T  28060726 gccatccaagagaaggccaccgcttttgacggagccggactcttccaaagatt 28060778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 202
Target Start/End: Original strand, 32774569 - 32774609
Alignment:
Q  162 gaaaaagccacaactttggacggagccggactcttccaaag 202  Q
    ||||| ||||| ||||||||||||||||||||| |||||||    
T  32774569 gaaaacgccactactttggacggagccggactcatccaaag 32774609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 153; Significance: 5e-81; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 20 - 328
Target Start/End: Original strand, 27408437 - 27408745
Alignment:
Q  20 cacctcacaatgcaaaaagagatgagacgttgtctcctccatctcaccacatagcacacaaacacaaggtttcccgggagccaaaactttccggtgccta 119  Q
    |||||||||||||| ||||| ||||||||| |||||||||||||||||||| ||||||||||||||||| | |||||| ||||||||  | |||  ||||    
T  27408437 cacctcacaatgcagaaagaaatgagacgtagtctcctccatctcaccacaaagcacacaaacacaaggatccccgggggccaaaacacttcggcaccta 27408536  T
Q  120 agattattccttgtcggaatacggtccctcaaggccatccaagaaaaagccacaactttggacggagccggactcttccaaagattggaaaacacctcct 219  Q
    || |||  |||||||| |||||||||| ||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||  |||||||| ||    
T  27408537 aggttagcccttgtcgaaatacggtccatcaaggccatccaagaaaatgccacaactttggagggagccggtctcttccaaagattgtcaaacaccttct 27408636  T
Q  220 cctctaaagcactcaacccttcttgatggatcacaccctcctccaaaactctataagaggagcgcaccttatacttatcactctcctccggcaaccacac 319  Q
    |||||||  ||||||||||||||||| | |  ||||| ||||||||||||||||||||||| ||||||  | ||||| ||| ||||||||||| ||| ||    
T  27408637 cctctaacacactcaacccttcttgaagaagaacaccatcctccaaaactctataagaggaccgcaccgaaaacttaccaccctcctccggcacccaaac 27408736  T
Q  320 ccacctatc 328  Q
    ||| |||||    
T  27408737 ccaactatc 27408745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 20 - 334
Target Start/End: Original strand, 30503308 - 30503622
Alignment:
Q  20 cacctcacaatgcaaaaagagatgagacgttgtctcctccatctcaccacatagcacacaaacacaaggtttcccgggagccaaaactttccggtgccta 119  Q
    |||||||||||||||||| | ||| |||||||| |||||| | ||||||||||||||||||| |||||||| ||||||||||||||  ||  |  | | |    
T  30503308 cacctcacaatgcaaaaataaatgggacgttgtttcctccctttcaccacatagcacacaaatacaaggttccccgggagccaaaatgttatgacgtcga 30503407  T
Q  120 agattattccttgtcggaatacggtccctcaaggccatccaagaaaaagccacaactttggacggagccggactcttccaaagattggaaaacacctcct 219  Q
    || ||   | ||   |||||||||||| | |  |||||||||||||||||||||||||| || |||||||||||| ||||||||||||  ||||| ||||    
T  30503408 aggtttgcctttaatggaatacggtccataagcgccatccaagaaaaagccacaactttagagggagccggactcctccaaagattggcgaacacttcct 30503507  T
Q  220 cctctaaagcactcaacccttcttgatggatcacaccctcctccaaaactctataagaggagcgcaccttatacttatcactctcctccggcaaccacac 319  Q
    ||||||   ||||||||||||||||| | |  |||||||||||||| ||||||||||  || |||||| |  | ||| ||| ||||||||| || || ||    
T  30503508 cctctagcacactcaacccttcttgaagaagtacaccctcctccaacactctataagtcgaccgcaccgtgaagttaccaccctcctccggtaatcaaac 30503607  T
Q  320 ccacctatcttcttc 334  Q
    ||| ||||| |||||    
T  30503608 ccatctatcctcttc 30503622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 225
Target Start/End: Complemental strand, 51041900 - 51041829
Alignment:
Q  154 ccatccaagaaaaagccacaactttggacggagccggactcttccaaagattggaaaacacctcctcctcta 225  Q
    |||||||||||||||| |||||||| || ||||||||||||||||| || |||| |||||| || |||||||    
T  51041900 ccatccaagaaaaagcaacaactttagatggagccggactcttccatagcttggcaaacacttcttcctcta 51041829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 12220564 - 12220608
Alignment:
Q  157 tccaagaaaaagccacaactttggacggagccggactcttccaaa 201  Q
    ||||||||||||| |||||||| ||| ||||||||||||||||||    
T  12220564 tccaagaaaaagctacaacttttgaccgagccggactcttccaaa 12220608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 201
Target Start/End: Complemental strand, 7425104 - 7425062
Alignment:
Q  159 caagaaaaagccacaactttggacggagccggactcttccaaa 201  Q
    |||||||||||||||||||| ||| ||||||| ||||||||||    
T  7425104 caagaaaaagccacaacttttgaccgagccgggctcttccaaa 7425062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 153 - 202
Target Start/End: Complemental strand, 15316275 - 15316226
Alignment:
Q  153 gccatccaagaaaaagccacaactttggacggagccggactcttccaaag 202  Q
    ||||||||||| ||||||||||| || |||||||||||||| ||||||||    
T  15316275 gccatccaagagaaagccacaaccttagacggagccggacttttccaaag 15316226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 202
Target Start/End: Complemental strand, 1033915 - 1033871
Alignment:
Q  158 ccaagaaaaagccacaactttggacggagccggactcttccaaag 202  Q
    |||||| || |||||||||||||| ||||||||||||||||||||    
T  1033915 ccaagagaacgccacaactttggaaggagccggactcttccaaag 1033871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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