View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7895_low_4 (Length: 265)
Name: NF7895_low_4
Description: NF7895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7895_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 16 - 232
Target Start/End: Complemental strand, 12255852 - 12255635
Alignment:
| Q |
16 |
atacttcaaccaatcaatattaatcacataaacaaatttacaagtaaaattaaagttaattattttgtgaatatcatttatatatttactcatttggtta |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
12255852 |
atacttcaaccaatcaatattaatcacataaacaaatttacaagtaaaattaaagttaattattttgtgaatatcatttatatatttactcatttgatta |
12255753 |
T |
|
| Q |
116 |
attt-gattgattgatggatccataatttttgaaaggtaggttaagcctcacctcacatatttaattaggttgatgtgtctggaaattgtgggtaacaat |
214 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
12255752 |
attttgattgattgatggatccataatttttgaaaggtaggttaagcctcacctcacatatttaattagcttgatgtgtctggaaattgtgggtaacaat |
12255653 |
T |
|
| Q |
215 |
aataaacactaaattcat |
232 |
Q |
| |
|
|||||||||||||||||| |
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| T |
12255652 |
aataaacactaaattcat |
12255635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 16 - 232
Target Start/End: Complemental strand, 12263244 - 12263027
Alignment:
| Q |
16 |
atacttcaaccaatcaatattaatcacataaacaaatttacaagtaaaattaaagttaattattttgtgaatatcatttatatatttactcatttggtta |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
12263244 |
atacttcaaccaatcaatattaatcacataaacaaatttacaagtaaaattaaagttaattattttgtgaatatcatttatatatttactcatttgatta |
12263145 |
T |
|
| Q |
116 |
attt-gattgattgatggatccataatttttgaaaggtaggttaagcctcacctcacatatttaattaggttgatgtgtctggaaattgtgggtaacaat |
214 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
12263144 |
attttgattgattgatggatccataatttttgaaaggtaggttaagcctcacctcacatatttaattagcttgatgtgtctggaaattgtgggtaacaat |
12263045 |
T |
|
| Q |
215 |
aataaacactaaattcat |
232 |
Q |
| |
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|||||||||||||||||| |
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| T |
12263044 |
aataaacactaaattcat |
12263027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 35 - 232
Target Start/End: Complemental strand, 12261360 - 12261162
Alignment:
| Q |
35 |
ttaatcacataaacaaatttacaagtaaaattaaagttaattattttgtgaatatcatttatatatttactcatttggttaattt-gattgattgatgga |
133 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
12261360 |
ttaatcacataaacaaatttacaagtaaaattaaagttaattattttgtgaatattatttatatatttactcatttggttaatttcgattgattgatgga |
12261261 |
T |
|
| Q |
134 |
tccataatttttgaaaggtaggttaagcctcacctcacatatttaattaggttgatgtgtctggaaattgtgggtaacaataataaacactaaattcat |
232 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12261260 |
tccataatttttgaaaggtaggttaagcctcacctcacatatttaattagcttgatgtgtctggaaattgtgggtaacaataataaacactaaattcat |
12261162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 16 - 232
Target Start/End: Complemental strand, 12269324 - 12269106
Alignment:
| Q |
16 |
atacttcaaccaatcaatattaatcacataaacaaatttacaagtaaaattaaagttaattattttgtgaatatcatttatatatttactcatttggtta |
115 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||| ||| ||||||||||||||| |
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| T |
12269324 |
atacttcaaccaatcaacattaatcacataaacaaatttacaagtaaaatgaaagttaattatttcgtgtatatcatttacatacttactcatttggtta |
12269225 |
T |
|
| Q |
116 |
a-tttgattga-ttgatggatccataatttttgaaaggtaggttaagcctcacctcacatatttaattaggttgatgtgtctggaaattgtgggtaacaa |
213 |
Q |
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| ||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||| || |||||||||||||||||| |||| || |
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| T |
12269224 |
attttgattgatttgatggatccataatttttgaaaggtagtttaagcatcacctcacatatttgcttagcttaatgtgtctggaaattgtgcgtaataa |
12269125 |
T |
|
| Q |
214 |
taataaacactaaattcat |
232 |
Q |
| |
|
| |||||||||||||||| |
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|
| T |
12269124 |
tgttaaacactaaattcat |
12269106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 44597804 - 44597848
Alignment:
| Q |
21 |
tcaaccaatcaatattaatcacataaacaaatttacaagtaaaat |
65 |
Q |
| |
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|||||||||||| ||||| | ||| |||||||||||||||||||| |
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| T |
44597804 |
tcaaccaatcaaaattaaccgcatgaacaaatttacaagtaaaat |
44597848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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