View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7896_low_2 (Length: 851)
Name: NF7896_low_2
Description: NF7896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7896_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 634; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 634; E-Value: 0
Query Start/End: Original strand, 15 - 841
Target Start/End: Complemental strand, 26931004 - 26930173
Alignment:
| Q |
15 |
caactataacatcccatttatttacttcccagttattgttttgagtgataatgtatttagtgtggcgtggcagaagagttctgaaaggggagtgaagagt |
114 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |
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| T |
26931004 |
caactataacatcccatttatttacttcctagttattgttttgagtgataatgtatttagtgtggcgtggcagtagagttctgaaagggaagtgaagagt |
26930905 |
T |
|
| Q |
115 |
gagagtgagagtgaattggtgagcaatggttcctccatatacttcacttttgggaagcaacaaagtttttgtgtttaatgctgagaccgtatactagcta |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26930904 |
gagagtgagagtgaattggtgagcaatggttcctccatatacttcacttttgggaagcaacaaagtttttgtgtttaatgctgagaccgtatactagcta |
26930805 |
T |
|
| Q |
215 |
gggaagacagtaaggacaaggcgtgaaaaaggggaaggcttatgtcagtttggccccccaaacaaccttcaaaggggaccatatttgatcatactcctat |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26930804 |
gggaagacagtaaggacaaggcgtgaaaaaggggaaggcttatgtcagtttggccccccaaacaaccttcaaaggggaccatatttgatcatactcctat |
26930705 |
T |
|
| Q |
315 |
gaattccactccnnnnnnnnnnnnnnnnnnnnnnggaacctacaaatcctacaatcacacccaaaactcatgtttcaccttacttctcttggacaaaaac |
414 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26930704 |
gaattccactccttttcttttcctttttgattttggaacctacaaatcctacaatcacacccaaaactcatgtttcaccttacttctcttggacaaaaac |
26930605 |
T |
|
| Q |
415 |
actagcaagactattcacaaagttaatgtgtgagccca-ttgcaaaatgggtaaaattaagaataaattttcattatgatccttaaatgtttac-----g |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||| | |
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| T |
26930604 |
actagcaagactattcacaaagttaatgtgtgagcccatttgcaaaatgggtaaaattaagaataaatttttattatcatccttaaatgtttacgacagg |
26930505 |
T |
|
| Q |
509 |
acatgatgtcactataatctttaaatgtattgaaatgtctgcaagacttagctcaactgacaatgtcgatattgttagattgaacatctttacccgagtt |
608 |
Q |
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||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
26930504 |
acaggatgtcactataatctttaaatgtattgaaatgt-tgcaagacttaattcaactgacaatgtcgatattgttagattgaacatctttacctgagtt |
26930406 |
T |
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| Q |
609 |
cgaatctgaaacttcgcattgttgtatgtaagtttcagtggtgtttgtcgcttcatctacaaattnnnnnnntgtattgaaagtacaaaatatctatcgg |
708 |
Q |
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||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
26930405 |
cgaatctgaaatctcgcattgatgtatgtaagtttcggtggtgtttgtcgcttcatctacaaactaaaaaaatgtattgaaagtacaaaatatctatcgg |
26930306 |
T |
|
| Q |
709 |
tgtgtcttttgttgtaatttcatgagttaattaaagtaactaacgtaagatatatttgaagttcaaattaaccgatgaaaaacgcacataaagaccaaat |
808 |
Q |
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||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
26930305 |
tgtgtcttttgttgtaatttcatgagttaatcaaaataactaacgtaagatatatttgaagatcaaactaaccgatgaaaaacgcacataaagaccaaat |
26930206 |
T |
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| Q |
809 |
tcaataagaattttccacatattgaacaccaaa |
841 |
Q |
| |
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|||||||||||||||||||||||||| |||||| |
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| T |
26930205 |
tcaataagaattttccacatattgaataccaaa |
26930173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 558 - 618
Target Start/End: Original strand, 23719509 - 23719569
Alignment:
| Q |
558 |
agctcaactgacaatgtcgatattgttagattgaacatctttacccgagttcgaatctgaa |
618 |
Q |
| |
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|||||||||||||||||| ||||||||| ||||||||||| | |||||||| |||||||| |
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| T |
23719509 |
agctcaactgacaatgtcaatattgttaagttgaacatcttcatccgagttcaaatctgaa |
23719569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 558 - 598
Target Start/End: Original strand, 7567429 - 7567469
Alignment:
| Q |
558 |
agctcaactgacaatgtcgatattgttagattgaacatctt |
598 |
Q |
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| T |
7567429 |
agctcaactgacaatgtcgatattgttagattggacatctt |
7567469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 544 - 587
Target Start/End: Original strand, 7874625 - 7874668
Alignment:
| Q |
544 |
tgtctgcaagacttagctcaactgacaatgtcgatattgttaga |
587 |
Q |
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| T |
7874625 |
tgtctgtaagacttagctcaaccgacaatgtcaatattgttaga |
7874668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 555 - 669
Target Start/End: Original strand, 43981935 - 43982049
Alignment:
| Q |
555 |
cttagctcaactgacaatgtcgatattgttagattgaacatctttacccgagttcgaatctgaaacttcgcattgttgtatgtaagtttcagtggtgttt |
654 |
Q |
| |
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|||||||||| ||||||| |||||||||||| |||| | |||| || | ||||||| ||||||| ||||| | |||| ||| ||||||| ||||| || |
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| T |
43981935 |
cttagctcaaaagacaatgccgatattgttaggctgaatacctttgcctgggttcgaacctgaaacctcgcagttttgtgtgtgagtttcaatggtgctt |
43982034 |
T |
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| Q |
655 |
gtcgcttcatctaca |
669 |
Q |
| |
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| | |||| |||||| |
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| T |
43982035 |
gccacttcgtctaca |
43982049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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