View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7896_low_3 (Length: 558)

Name: NF7896_low_3
Description: NF7896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7896_low_3
NF7896_low_3
[»] chr3 (6 HSPs)
chr3 (127-296)||(29315665-29315833)
chr3 (373-540)||(29315947-29316109)
chr3 (74-209)||(52724929-52725068)
chr3 (295-344)||(29315904-29315953)
chr3 (441-542)||(29297713-29297808)
chr3 (338-386)||(29297610-29297658)
[»] chr4 (5 HSPs)
chr4 (74-209)||(30226273-30226412)
chr4 (70-191)||(19032592-19032717)
chr4 (70-191)||(31940023-31940148)
chr4 (70-188)||(13770143-13770265)
chr4 (71-187)||(24783133-24783251)
[»] chr2 (6 HSPs)
chr2 (74-209)||(21612979-21613118)
chr2 (74-191)||(21278951-21279072)
chr2 (89-208)||(41055505-41055627)
chr2 (70-188)||(5380944-5381066)
chr2 (70-148)||(19590503-19590581)
chr2 (89-191)||(25280479-25280585)
[»] chr7 (6 HSPs)
chr7 (74-209)||(41532736-41532875)
chr7 (78-209)||(5480863-5480998)
chr7 (73-208)||(11469185-11469324)
chr7 (70-149)||(45809502-45809581)
chr7 (76-149)||(31174184-31174257)
chr7 (158-191)||(33335628-33335661)
[»] chr5 (4 HSPs)
chr5 (74-209)||(12105980-12106119)
chr5 (74-209)||(21361229-21361368)
chr5 (70-149)||(8403852-8403931)
chr5 (70-149)||(17172543-17172622)
[»] chr8 (1 HSPs)
chr8 (70-191)||(2812404-2812529)
[»] chr6 (1 HSPs)
chr6 (83-149)||(30383815-30383881)


Alignment Details
Target: chr3 (Bit Score: 154; Significance: 2e-81; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 127 - 296
Target Start/End: Original strand, 29315665 - 29315833
Alignment:
Q  127 caaagactcaaattcatccataaatgtgaattaaagtgacttgcaatatccttttcaatgtaaatgaagcgtcgtttcctttccttgccctcattttcca 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  29315665 caaagactcaaattcatccataaatgtgaattaaagtgacttgcaatatccttttcagtgtaaatgaagcgtcgtttcctttccttgccctcattttcca 29315764  T
Q  227 ttttagttgaagcctagagttacatatctttaaacgcttgcatatataaaagatagcataaaactaataa 296  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  29315765 ttttagttgaagcctagagtcacatatctttaaacgcttgcatatat-aaagatagcataaaactaataa 29315833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 373 - 540
Target Start/End: Original strand, 29315947 - 29316109
Alignment:
Q  373 tttataatttgttataagagccaaatcttgaggatgctctcnnnnnnnnnnnnntacattggaaaaattactgtacatttgtattatttgtatgcacaaa 472  Q
    ||||| |||||||||||||||||||||||||||||||||||             ||||||||||||||||||||||||||||||||||||||||||||||    
T  29315947 tttatcatttgttataagagccaaatcttgaggatgctctcaaaaaaggaaaaatacattggaaaaattactgtacatttgtattatttgtatgcacaaa 29316046  T
Q  473 tgctgtggtacctttactttacacattggaaagattgaaatcttccttttcttattgtctattgtaca 540  Q
    |||||| ||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29316047 tgctgttgtac-----ctttacacattggaaagattgaaatcttccttttcttattgtctattgtaca 29316109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 74 - 209
Target Start/End: Complemental strand, 52725068 - 52724929
Alignment:
Q  74 aagaaattaaaattgatagtagctatttatgaatgtcgaattcaacgactcttcaaagactcaaattcatccataaatg----tgaattaaagtgacttg 169  Q
    ||||||||||||||||||||||||||||| ||| |||||| |   |||  ||||||||||||||||||||| |||||||    |||||| ||||||||||    
T  52725068 aagaaattaaaattgatagtagctatttacgaaagtcgaacttggcgatccttcaaagactcaaattcatctataaatgcttatgaatttaagtgacttg 52724969  T
Q  170 caatatccttttcaatgtaaatgaagcgtcgtttcctttc 209  Q
    |||| || |||||||||||||| |||| | ||||||||||    
T  52724968 caatgtctttttcaatgtaaataaagcattgtttcctttc 52724929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 295 - 344
Target Start/End: Original strand, 29315904 - 29315953
Alignment:
Q  295 aattgtacttgagagattgattactcatcagttaaaaaatacatttatca 344  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29315904 aattgtacttgagagattgattactcatcagttaaaaaatacatttatca 29315953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 441 - 542
Target Start/End: Original strand, 29297713 - 29297808
Alignment:
Q  441 tactgtacatttgtattatttgtatgcacaaatgctgtggtacctttactttacacattggaaagattgaaatcttccttttcttattgtctattgtaca 540  Q
    |||||||||||||||||||||||||| ||||||| ||  ||||     |||||||||||||||||||| ||| ||||| |||||||||||||| ||||||    
T  29297713 tactgtacatttgtattatttgtatgtacaaatgttgctgtac-----ctttacacattggaaagattaaaaccttcc-tttcttattgtctactgtaca 29297806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 338 - 386
Target Start/End: Original strand, 29297610 - 29297658
Alignment:
Q  338 tttatcaaaacaaatcatcatataaaaaattatgttttataatttgtta 386  Q
    |||||||||||||||| |||  | |||| ||||||||||||||||||||    
T  29297610 tttatcaaaacaaatcctcacgtcaaaatttatgttttataatttgtta 29297658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 1e-24; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 74 - 209
Target Start/End: Original strand, 30226273 - 30226412
Alignment:
Q  74 aagaaattaaaattgatagtagctatttatgaatgtcgaattcaacgactcttcaaagactcaaattcatccataaatg----tgaattaaagtgacttg 169  Q
    ||||||||||||||||||||||||||||| ||| |||||| |   |||  ||||||||||||||||||||| |||| ||    |||||| ||||||||||    
T  30226273 aagaaattaaaattgatagtagctatttacgaaagtcgaacttggcgatccttcaaagactcaaattcatctataactgcttatgaatttaagtgacttg 30226372  T
Q  170 caatatccttttcaatgtaaatgaagcgtcgtttcctttc 209  Q
    |||| || |||||||||||||| |||| | ||||||||||    
T  30226373 caatgtctttttcaatgtaaataaagcattgtttcctttc 30226412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 70 - 191
Target Start/End: Original strand, 19032592 - 19032717
Alignment:
Q  70 acaaaagaaattaaaattgatagtagctatttatgaatgtcgaattcaacgactcttcaaagactcaaattcatccataa----atgtgaattaaagtga 165  Q
    ||||||||||| |||| | ||||||||||| ||||||  | ||| ||| |||| ||||||| ||||||||||||||||||    || |||  |||| |||    
T  19032592 acaaaagaaataaaaactaatagtagctatatatgaaaattgaactcagcgacccttcaaacactcaaattcatccataattgcatctgagctaaactga 19032691  T
Q  166 cttgcaatatccttttcaatgtaaat 191  Q
    |||||||| |||||||||||||||||    
T  19032692 cttgcaatttccttttcaatgtaaat 19032717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 70 - 191
Target Start/End: Original strand, 31940023 - 31940148
Alignment:
Q  70 acaaaagaaattaaaattgatagtagctatttatgaatgtcgaattcaacgactcttcaaagactcaaattcatccataa----atgtgaattaaagtga 165  Q
    ||||||||||| |||| | ||||||||||||||||||  | ||| || ||||| ||||||||||||||||||||||||||    || |||  |||| |||    
T  31940023 acaaaagaaataaaaactaatagtagctatttatgaaaattgaactcgacgacccttcaaagactcaaattcatccataattgcatctgagctaaactga 31940122  T
Q  166 cttgcaatatccttttcaatgtaaat 191  Q
    ||| |||| || ||||||||||||||    
T  31940123 cttacaatgtctttttcaatgtaaat 31940148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 70 - 188
Target Start/End: Complemental strand, 13770265 - 13770143
Alignment:
Q  70 acaaaagaaattaaaattgatagtagctatttatgaatgtcgaattcaacgactcttcaaagactcaaattcatccataa----atgtgaattaaagtga 165  Q
    ||||||||||| |||| | ||||||||||||||||||  | ||||||  || | ||||||||||||||||||||||||||    || |||  |||| |||    
T  13770265 acaaaagaaataaaaactaatagtagctatttatgaaaattgaattcgtcggcccttcaaagactcaaattcatccataattgcatttgagctaaattga 13770166  T
Q  166 cttgcaatatccttttcaatgta 188  Q
    |||||||| | ||||||||||||    
T  13770165 cttgcaatgttcttttcaatgta 13770143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 71 - 187
Target Start/End: Original strand, 24783133 - 24783251
Alignment:
Q  71 caaaagaaattaaaattgatagtagctatttatgaatgtcgaattcaacgactcttcaaagactcaaattcatccataaatg--tgaattaaagtgactt 168  Q
    |||||||||  |||| | ||||||||||||||||||  ||||| ||  ||||  ||||||||||||||||||||||||| ||  |||  |||| ||||||    
T  24783133 caaaagaaacaaaaactaatagtagctatttatgaaaatcgaactcggcgaccattcaaagactcaaattcatccataattgcatgagctaaactgactt 24783232  T
Q  169 gcaatatccttttcaatgt 187  Q
    ||||| ||||||| |||||    
T  24783233 gcaatgtcctttttaatgt 24783251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 1e-24; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 74 - 209
Target Start/End: Original strand, 21612979 - 21613118
Alignment:
Q  74 aagaaattaaaattgatagtagctatttatgaatgtcgaattcaacgactcttcaaagactcaaattcatccataaatg----tgaattaaagtgacttg 169  Q
    ||||||||||||||||||||||||||||| ||| |||||| |   |||  ||||||||||||||||||||| |||| ||    |||||| ||||||||||    
T  21612979 aagaaattaaaattgatagtagctatttacgaaagtcgaacttggcgatccttcaaagactcaaattcatctataactgcttatgaatttaagtgacttg 21613078  T
Q  170 caatatccttttcaatgtaaatgaagcgtcgtttcctttc 209  Q
    |||| || |||||||||||||| |||| | ||||||||||    
T  21613079 caatgtctttttcaatgtaaataaagcattgtttcctttc 21613118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 74 - 191
Target Start/End: Complemental strand, 21279072 - 21278951
Alignment:
Q  74 aagaaattaaaattgatagtagctatttatgaatgtcgaattcaacgactcttcaaagactcaaattcatccataaatg----tgaattaaagtgacttg 169  Q
    |||||||||||| ||||||||||||||||| || |||||| || ||||  ||||||| |||||||||||||||||| ||    ||| || ||||||||||    
T  21279072 aagaaattaaaactgatagtagctatttataaaagtcgaactcgacgatccttcaaatactcaaattcatccataagtgcctatgagtttaagtgacttg 21278973  T
Q  170 caatatccttttcaatgtaaat 191  Q
    |||||||||||| ||| |||||    
T  21278972 caatatcctttttaatataaat 21278951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 89 - 208
Target Start/End: Original strand, 41055505 - 41055627
Alignment:
Q  89 atagtagctatttatgaatgtcgaattcaacgactcttcaaagactcaaattcatccataaatg----tgaattaaagtgacttgcaatatccttttcaa 184  Q
    |||||||||||||||||| |||||| ||||||||  || |||||||||||||||||||||| ||    |||  |||| |||| | |||| ||||||||||    
T  41055505 atagtagctatttatgaaagtcgaactcaacgaccttttaaagactcaaattcatccataattgtctatgagctaaactgacatccaatgtccttttcaa 41055604  T
Q  185 tgtaaatgaagcgtcgtttccttt 208  Q
    ||||||| ||| ||||||||||||    
T  41055605 tgtaaat-aagtgtcgtttccttt 41055627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 70 - 188
Target Start/End: Original strand, 5380944 - 5381066
Alignment:
Q  70 acaaaagaaattaaaattgatagtagctatttatgaatgtcgaattcaacgactcttcaaagactcaaattcatccataa----atgtgaattaaagtga 165  Q
    ||||||||||| |||| | ||||| ||||||||||||  | ||| ||  || | ||||||||||||||||||||||||||    || |||  |||| |||    
T  5380944 acaaaagaaataaaaactaatagtggctatttatgaaaattgaactcgtcggcccttcaaagactcaaattcatccataattgcatctgagctaaattga 5381043  T
Q  166 cttgcaatatccttttcaatgta 188  Q
    |||||||| | ||||||||||||    
T  5381044 cttgcaatgttcttttcaatgta 5381066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 70 - 148
Target Start/End: Original strand, 19590503 - 19590581
Alignment:
Q  70 acaaaagaaattaaaattgatagtagctatttatgaatgtcgaattcaacgactcttcaaagactcaaattcatccata 148  Q
    ||||||||||| |||| | |||||| |||||||||||  | ||| || | ||| ||||||| |||||||||||||||||    
T  19590503 acaaaagaaataaaaactaatagtaactatttatgaaaattgaactcgaagacccttcaaaaactcaaattcatccata 19590581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 191
Target Start/End: Complemental strand, 25280585 - 25280479
Alignment:
Q  89 atagtagctatttatgaatgtcgaattcaacgactcttcaaagactcaaattcatccataa----atgtgaattaaagtgacttgcaatatccttttcaa 184  Q
    ||||||||||||||| ||  | ||| || || || ||||||||||||||||||||||||||    || | |  ||||  |||||||||| ||||||||||    
T  25280585 atagtagctatttataaaaattgaactcgaccacccttcaaagactcaaattcatccataattgcatctcaggtaaaccgacttgcaatgtccttttcaa 25280486  T
Q  185 tgtaaat 191  Q
    |||||||    
T  25280485 tgtaaat 25280479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 74 - 209
Target Start/End: Complemental strand, 41532875 - 41532736
Alignment:
Q  74 aagaaattaaaattgatagtagctatttatgaatgtcgaattcaacgactcttcaaagactcaaattcatccataaatg----tgaattaaagtgacttg 169  Q
    ||||||||||||||||||||||||||||| ||| |||||| |   |||  ||||||||||||||||||||| |||| ||    |||||| ||||||||||    
T  41532875 aagaaattaaaattgatagtagctatttacgaaagtcgaacttggcgatccttcaaagactcaaattcatctataactgcttatgaatttaagtgacttg 41532776  T
Q  170 caatatccttttcaatgtaaatgaagcgtcgtttcctttc 209  Q
    |||| || |||||||||||||| |||| | |||| |||||    
T  41532775 caatgtctttttcaatgtaaataaagcattgttttctttc 41532736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 78 - 209
Target Start/End: Complemental strand, 5480998 - 5480863
Alignment:
Q  78 aattaaaattgatagtagctatttatgaatgtcgaattcaacgactcttcaaagactcaaattcatccataaatg----tgaattaaagtgacttgcaat 173  Q
    |||||||| |||||||||||||||||||| |||||| || || |  ||| |||||||||||||||||||||| ||    | | || ||||||||||||||    
T  5480998 aattaaaactgatagtagctatttatgaaagtcgaactcgacaatccttgaaagactcaaattcatccataactgcctataagtttaagtgacttgcaat 5480899  T
Q  174 atccttttcaatgtaaatgaagcgtcgtttcctttc 209  Q
     | ||||||||||||||| ||| || ||||||||||    
T  5480898 gttcttttcaatgtaaataaagtgttgtttcctttc 5480863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 73 - 208
Target Start/End: Complemental strand, 11469324 - 11469185
Alignment:
Q  73 aaagaaattaaaattgatagtagctatttatgaatgtcgaattcaacgactcttcaaagactcaaattcatccataaatg----tgaattaaagtgactt 168  Q
    ||||||||||||| | ||| || ||||||||||| |||||| |  || |   ||||||||||||||||||| |||||  |    |||||| |||||| ||    
T  11469324 aaagaaattaaaactaataatacctatttatgaaagtcgaacttgacaatctttcaaagactcaaattcattcataaccgcctatgaatttaagtgattt 11469225  T
Q  169 gcaatatccttttcaatgtaaatgaagcgtcgtttccttt 208  Q
    ||||| ||||||||||||||||| || ||| |||||||||    
T  11469224 gcaatgtccttttcaatgtaaataaatcgttgtttccttt 11469185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 70 - 149
Target Start/End: Original strand, 45809502 - 45809581
Alignment:
Q  70 acaaaagaaattaaaattgatagtagctatttatgaatgtcgaattcaacgactcttcaaagactcaaattcatccataa 149  Q
    ||||||||||| |||| | ||||||||||||||||||  | ||| ||  || | ||||||||||||||||||||||||||    
T  45809502 acaaaagaaataaaaactaatagtagctatttatgaaaattgaactcggcggcccttcaaagactcaaattcatccataa 45809581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 76 - 149
Target Start/End: Original strand, 31174184 - 31174257
Alignment:
Q  76 gaaattaaaattgatagtagctatttatgaatgtcgaattcaacgactcttcaaagactcaaattcatccataa 149  Q
    ||||| |||||| ||||||| |||||||||| |||||| || ||||   |||||||||||||||||||| ||||    
T  31174184 gaaataaaaattaatagtagttatttatgaaagtcgaactcgacgatctttcaaagactcaaattcatcgataa 31174257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 191
Target Start/End: Original strand, 33335628 - 33335661
Alignment:
Q  158 taaagtgacttgcaatatccttttcaatgtaaat 191  Q
    |||| |||||||||||||||||||||||||||||    
T  33335628 taaattgacttgcaatatccttttcaatgtaaat 33335661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 74 - 209
Target Start/End: Complemental strand, 12106119 - 12105980
Alignment:
Q  74 aagaaattaaaattgatagtagctatttatgaatgtcgaattcaacgactcttcaaagactcaaattcatccataaatg----tgaattaaagtgacttg 169  Q
    ||||||||||||||||||||||||||||| ||| |||||| ||  |||  ||||||||||||||||||||| |||| ||    ||| || | ||||||||    
T  12106119 aagaaattaaaattgatagtagctatttacgaaagtcgaactcggcgatccttcaaagactcaaattcatctataactgcttatgagtttatgtgacttg 12106020  T
Q  170 caatatccttttcaatgtaaatgaagcgtcgtttcctttc 209  Q
    |||| || |||||||||||||| |||| | ||||||||||    
T  12106019 caatgtctttttcaatgtaaataaagcattgtttcctttc 12105980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 74 - 209
Target Start/End: Complemental strand, 21361368 - 21361229
Alignment:
Q  74 aagaaattaaaattgatagtagctatttatgaatgtcgaattcaacgactcttcaaagactcaaattcatccataaatg----tgaattaaagtgacttg 169  Q
    |||||||||||||||||||||||||||||  || |||||| |   |||  ||||||||||||||||||||| |||| ||    |||||| |||||||||     
T  21361368 aagaaattaaaattgatagtagctatttacaaaagtcgaacttggcgatccttcaaagactcaaattcatctataactgcttatgaatttaagtgactta 21361269  T
Q  170 caatatccttttcaatgtaaatgaagcgtcgtttcctttc 209  Q
    |||| || |||||||||||||| || | | ||||||||||    
T  21361268 caatgtctttttcaatgtaaataaaacattgtttcctttc 21361229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 70 - 149
Target Start/End: Complemental strand, 8403931 - 8403852
Alignment:
Q  70 acaaaagaaattaaaattgatagtagctatttatgaatgtcgaattcaacgactcttcaaagactcaaattcatccataa 149  Q
    ||||||||||| |||||| ||||||||||||||||||  | ||| ||  |||| ||||||||||||||||||||||||||    
T  8403931 acaaaagaaataaaaattaatagtagctatttatgaaaattgaactcggcgacccttcaaagactcaaattcatccataa 8403852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 70 - 149
Target Start/End: Complemental strand, 17172622 - 17172543
Alignment:
Q  70 acaaaagaaattaaaattgatagtagctatttatgaatgtcgaattcaacgactcttcaaagactcaaattcatccataa 149  Q
    ||||||||||| |||| | ||||| ||||||||||||  | ||| || ||| | ||||||||||||||||||||||||||    
T  17172622 acaaaagaaataaaaactaatagtggctatttatgaaaattgaactcgacggcccttcaaagactcaaattcatccataa 17172543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 70 - 191
Target Start/End: Complemental strand, 2812529 - 2812404
Alignment:
Q  70 acaaaagaaattaaaattgatagtagctatttatgaatgtcgaattcaacgactcttcaaagactcaaattcatccataa----atgtgaattaaagtga 165  Q
    ||||||||||| |||||| ||||||||||||||||||  | ||| ||   | ||||||||||||||||||||||||||||    || ||| ||||| |||    
T  2812529 acaaaagaaataaaaattaatagtagctatttatgaaaattgaactcggtggctcttcaaagactcaaattcatccataattgcatctgagttaaactga 2812430  T
Q  166 cttgcaatatccttttcaatgtaaat 191  Q
    |||||||| || ||||||||||||||    
T  2812429 cttgcaatgtctttttcaatgtaaat 2812404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 83 - 149
Target Start/End: Original strand, 30383815 - 30383881
Alignment:
Q  83 aaattgatagtagctatttatgaatgtcgaattcaacgactcttcaaagactcaaattcatccataa 149  Q
    ||||| ||||||||||||||||||  | ||| ||  || | ||||||||||||||||||||||||||    
T  30383815 aaattaatagtagctatttatgaaaattgaactcgtcggcccttcaaagactcaaattcatccataa 30383881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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