View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7896_low_4 (Length: 516)
Name: NF7896_low_4
Description: NF7896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7896_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 174 - 443
Target Start/End: Complemental strand, 40376485 - 40376215
Alignment:
| Q |
174 |
gcttattaggatcataattggaggtgagaatattaaattttatgcattaaccatttgtaatcaatttgatgatagaaaacgaattttcatattcatctc- |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
40376485 |
gcttattaggatcataattggaggtgagaatattaaattttatgcattaaccatttgtaatcaatttgatgactgaaaatgaattttcatattcatcttt |
40376386 |
T |
|
| Q |
273 |
acaaattnnnnnnnttcaaaagaggaataagaaattgaacctgcttcaaattacagaatccttcataaacattaagaacagagtcaaaagccttaacaag |
372 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40376385 |
acaaattaaaaaaattcaaaagaggaataagaaattgaacctgcttcaaattacagaatccttcataaacattaagaacagagtcaaaagccttaacaag |
40376286 |
T |
|
| Q |
373 |
agaaagcagcgatgatttcccatctccattcacaatttctacacaaacccatttcacatatcaatcatcat |
443 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40376285 |
agaaagcaacgatgatttcccatctccattcacaatttctacacaaacccatttcacatatcaatcatcat |
40376215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 40376658 - 40376549
Alignment:
| Q |
1 |
catgaacacttccaacaataacatgagttgcagaataagcatttgcttctcgtaccaaaattctcttcaccgatgatccacggcaaatttttagcttaag |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
40376658 |
catgaacacttccaacaataacatgagatgcagaataagcatttgcttctcgtaccaaaattctcttcaccgatgatccacggcaaatttttagtttaag |
40376559 |
T |
|
| Q |
101 |
atccacctac |
110 |
Q |
| |
|
|||||||||| |
|
|
| T |
40376558 |
atccacctac |
40376549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 10 - 110
Target Start/End: Complemental strand, 10258182 - 10258082
Alignment:
| Q |
10 |
ttccaacaataacatgagttgcagaataagcatttgcttctcgtaccaaaattctcttcaccgatgatccacggcaaatttttagcttaagatccaccta |
109 |
Q |
| |
|
||||||| ||||||||||||||| |||| |||||||||||| |||||||||||| |||| || || || ||||||||||||||||| ||||||||||| |
|
|
| T |
10258182 |
ttccaactataacatgagttgcacaatattcatttgcttctctaaccaaaattctcctcactgacgaaccccggcaaatttttagcttcagatccaccta |
10258083 |
T |
|
| Q |
110 |
c |
110 |
Q |
| |
|
| |
|
|
| T |
10258082 |
c |
10258082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 415
Target Start/End: Complemental strand, 10257882 - 10257777
Alignment:
| Q |
310 |
aacctgcttcaaattacagaatccttcataaacattaagaacagagtcaaaagccttaacaagagaaagcagcgatgatttcccatctccattcacaatt |
409 |
Q |
| |
|
|||||| ||||| || ||||||||||| ||| || ||| || || ||||| || || |||||||||| | || ||||||||||||| |||||||||| |
|
|
| T |
10257882 |
aacctgtttcaagttgcagaatccttcgtaaccagaaagcactgaatcaaatgctttgacaagagaaaataaagaagatttcccatctcgattcacaatt |
10257783 |
T |
|
| Q |
410 |
tctaca |
415 |
Q |
| |
|
|||||| |
|
|
| T |
10257782 |
tctaca |
10257777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University