View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7896_low_6 (Length: 425)
Name: NF7896_low_6
Description: NF7896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7896_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 313; Significance: 1e-176; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 14 - 408
Target Start/End: Original strand, 18091694 - 18092088
Alignment:
| Q |
14 |
gaaaaaagtaaaagtagtagttcatgttgggtcatttagtcatgggtcaataaacaataagtagaatattcaaagtaaactactaaaggatgagtagttc |
113 |
Q |
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| T |
18091694 |
gaaaaaaataaaagtagtagttcatgtcgggtcatttagtcatgggtcaataaacaataagtagaatattccaagtaaactactaaagtatgagtagttc |
18091793 |
T |
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| Q |
114 |
aaattaaatggctgttcttattcaacaaaaatcatatataaatagacatattgagctcctcattaaactcacttgtattgaacaagttcaatagctcata |
213 |
Q |
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| T |
18091794 |
aaattaaatggctgttcttattcaacaaaaatcatatataaatagacatattgagctcctcattaaactcacttgtattgaacaagttcaatagctcata |
18091893 |
T |
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| Q |
214 |
gttctctcnnnnnnntggacatgttacaaaattccacactttcctacctagtaataattttcactttctctatacttctcctaatcaaatttcttattcc |
313 |
Q |
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| T |
18091894 |
gttctctcaaaaaaatggacttgttacaaagttccacactttcctacctagtaataattttcactttctctatacttctccttatcaaatttcttactcc |
18091993 |
T |
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| Q |
314 |
aacaaacaaaaccaaccnnnnnnnccactctaagcttccaccaggtccttcaccacttcccataataggaaaccttctaaaactaggcaacaaac |
408 |
Q |
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| T |
18091994 |
aacaaacaaaacaaaccaaaaaaaccactctaagcttccaccaggtccttcacaacttcccataataggaaaccttctaaaactaggcaacaaac |
18092088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 229 - 408
Target Start/End: Original strand, 18102053 - 18102232
Alignment:
| Q |
229 |
tggacatgttacaaaattccacactttcctacctagtaataattttcactttctctatacttctcctaatcaaatttcttattccaacaaacaaaaccaa |
328 |
Q |
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| T |
18102053 |
tggacttgttacaaagttccacacttacctacctagtaataattttcactttctctatacctctccttctcaaatttcttattccaacaaacaaaaccaa |
18102152 |
T |
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| Q |
329 |
ccnnnnnnnccactctaagcttccaccaggtccttcaccacttcccataataggaaaccttctaaaactaggcaacaaac |
408 |
Q |
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| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
18102153 |
caaaataaactactctaagcttccaccaggtccttcaccacttcccataattggaaaccttctaaaactaggcaacaaac |
18102232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 145 - 221
Target Start/End: Original strand, 18101912 - 18101988
Alignment:
| Q |
145 |
tcatatataaatagacatattgagctcctcattaaactcacttgtattgaacaagttcaatagctcatagttctctc |
221 |
Q |
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|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||| |||| |
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| T |
18101912 |
tcatatataaatagacatattgagctcctcatgatactcacttgtattgaacaagttcaataattcatagttgtctc |
18101988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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