View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7896_low_9 (Length: 314)
Name: NF7896_low_9
Description: NF7896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7896_low_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 19 - 301
Target Start/End: Complemental strand, 32184463 - 32184181
Alignment:
| Q |
19 |
atctatcccaccgattcttttcaagccaaccatatttagaaatcttatgatggaagatagtcctaacctaacaaaactacaaggtgtttttctcaactcc |
118 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
32184463 |
atctatcccaccgattcttttcaagcctaccatattcagaaatcttatgatggaagatagtcctaacctaacaaaactacaaggtgtttttctcaacacc |
32184364 |
T |
|
| Q |
119 |
tttgaagcacttgaatctcattcactacaagctcttaataatggagaagttgttaaaggaatgcctcctgtttatgctgttggtccttttgttcctcttg |
218 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32184363 |
tttaaagcacttgaatctcattcactacaagctcttaataatggagaagttgttaaaggaatgcctcctgtttatgctgttggtccttttgttcctcttg |
32184264 |
T |
|
| Q |
219 |
agtttgagaaagaaagtcaaaaagaaacatcatcagaatcaccaccattgaccaagtggcttgatgaacaacctattggatct |
301 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32184263 |
agtttgagaaagaaagtcaaaaggaaacatcatcagaatcaccaccattgaccaagtggcttgatgaacaacctattggatct |
32184181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 96 - 230
Target Start/End: Complemental strand, 32177207 - 32177073
Alignment:
| Q |
96 |
tacaaggtgtttttctcaactcctttgaagcacttgaatctcattcactacaagctcttaataatggagaagttgttaaaggaatgcctcctgtttatgc |
195 |
Q |
| |
|
|||| ||||||||| |||| | |||||||||||||| |||||||||||| | |||||||||| |||| ||||||| ||| ||||||||||||||||| |
|
|
| T |
32177207 |
tacacggtgtttttgccaacacttttgaagcacttgagtctcattcactagaggctcttaatagtggaaaagttgtcaaaaatatgcctcctgtttatgc |
32177108 |
T |
|
| Q |
196 |
tgttggtccttttgttcctcttgagtttgagaaag |
230 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||| |
|
|
| T |
32177107 |
agttggtccttttgttccttttgagtttgaaaaag |
32177073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 186 - 255
Target Start/End: Original strand, 21003956 - 21004025
Alignment:
| Q |
186 |
ctgtttatgctgttggtccttttgttcctcttgagtttgagaaagaaagtcaaaaagaaacatcatcaga |
255 |
Q |
| |
|
|||||| || |||| ||||||||||||||||||| |||||||||||| |||||| |||||||||||||| |
|
|
| T |
21003956 |
ctgtttctggtgtttgtccttttgttcctcttgaacttgagaaagaaaatcaaaaggaaacatcatcaga |
21004025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University