View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7897_high_1 (Length: 241)

Name: NF7897_high_1
Description: NF7897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7897_high_1
NF7897_high_1
[»] chr5 (7 HSPs)
chr5 (106-241)||(19563790-19563924)
chr5 (64-122)||(19563927-19563985)
chr5 (142-235)||(32421909-32422002)
chr5 (183-240)||(14161064-14161121)
chr5 (148-239)||(6095304-6095395)
chr5 (193-235)||(40907614-40907656)
chr5 (88-125)||(19563871-19563908)
[»] chr1 (3 HSPs)
chr1 (142-241)||(3887419-3887518)
chr1 (169-241)||(40642939-40643011)
chr1 (204-241)||(6953514-6953551)
[»] chr4 (1 HSPs)
chr4 (147-241)||(7206302-7206396)
[»] chr7 (2 HSPs)
chr7 (142-235)||(35105173-35105266)
chr7 (148-235)||(38453371-38453458)
[»] chr3 (2 HSPs)
chr3 (142-233)||(32112009-32112100)
chr3 (149-232)||(44489396-44489479)
[»] chr2 (4 HSPs)
chr2 (142-229)||(36306980-36307067)
chr2 (193-241)||(411790-411838)
chr2 (147-233)||(4007182-4007267)
chr2 (147-241)||(10918576-10918670)
[»] chr8 (2 HSPs)
chr8 (182-232)||(9722282-9722332)
chr8 (183-241)||(38516306-38516364)
[»] chr6 (1 HSPs)
chr6 (204-240)||(32888929-32888965)


Alignment Details
Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 106 - 241
Target Start/End: Complemental strand, 19563924 - 19563790
Alignment:
Q  106 agctataatttgtagcttttatgattctactagtatgctataatttgtagcttttggtctcttcaattgatttttgtcttaaattcgttgttaaatatac 205  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  19563924 agctataatttctagcttttatgattctactagta-gctataatttgtagcttttggtctcttcaattgatttttgtcttaaattcattgttaaatatac 19563826  T
Q  206 ttttatataaatacattcaaacataaatcattttac 241  Q
    ||||||||||||||||||||||||||||||||||||    
T  19563825 ttttatataaatacattcaaacataaatcattttac 19563790  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 64 - 122
Target Start/End: Complemental strand, 19563985 - 19563927
Alignment:
Q  64 gattctagaggtacttagaattgattttatgattctacaagcagctataatttgtagct 122  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  19563985 gattctagaggtacttagaattgattttatgattctactagcagctataatttgtagct 19563927  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 142 - 235
Target Start/End: Complemental strand, 32422002 - 32421909
Alignment:
Q  142 gctataatttgtagcttttggtctcttcaattgatttttgtcttaaattcgttgttaaatatacttttatataaatacattcaaacataaatca 235  Q
    |||| |||||||||| |||||  ||| ||||||||||| | ||||||||| ||| |||||  ||||||| |||||||||| |||||||||||||    
T  32422002 gctacaatttgtagcatttggcttctacaattgattttagccttaaattcattgataaattcacttttacataaatacatccaaacataaatca 32421909  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 183 - 240
Target Start/End: Complemental strand, 14161121 - 14161064
Alignment:
Q  183 cttaaattcgttgttaaatatacttttatataaatacattcaaacataaatcatttta 240  Q
    ||||||||  |||||||| ||| ||||| || ||||||||||||||||||||||||||    
T  14161121 cttaaatttattgttaaacatatttttacattaatacattcaaacataaatcatttta 14161064  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 239
Target Start/End: Complemental strand, 6095395 - 6095304
Alignment:
Q  148 atttgtagcttttggtctcttcaattgatttttgtcttaaattcgttgttaaatatacttttatataaatacattcaaacataaatcatttt 239  Q
    |||||||| ||||||  ||| || || ||||| | | ||||||| |||||||||  | ||||| ||||||| ||||||||||||||||||||    
T  6095395 atttgtagtttttggcttctacattttattttagccataaattcattgttaaattcatttttacataaatatattcaaacataaatcatttt 6095304  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 235
Target Start/End: Complemental strand, 40907656 - 40907614
Alignment:
Q  193 ttgttaaatatacttttatataaatacattcaaacataaatca 235  Q
    |||||||||||| |||||||||||||||||||  |||||||||    
T  40907656 ttgttaaatatatttttatataaatacattcatgcataaatca 40907614  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 125
Target Start/End: Complemental strand, 19563908 - 19563871
Alignment:
Q  88 ttttatgattctacaagcagctataatttgtagctttt 125  Q
    |||||||||||||| || ||||||||||||||||||||    
T  19563908 ttttatgattctactagtagctataatttgtagctttt 19563871  T

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Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 142 - 241
Target Start/End: Complemental strand, 3887518 - 3887419
Alignment:
Q  142 gctataatttgtagcttttggtctcttcaattgatttttgtcttaaattcgttgttaaatatacttttatataaatacattcaaacataaatcattttac 241  Q
    |||| ||||||||||||||||  ||| ||||||||||| | ||||||||  || ||||||  ||||||| |||||||||| |||||||||| ||||||||    
T  3887518 gctagaatttgtagcttttggcttctacaattgattttagccttaaatttattattaaatccacttttacataaatacatccaaacataaaacattttac 3887419  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 40642939 - 40643011
Alignment:
Q  169 caattgatttttgtcttaaattcgttgttaaatatacttttatataaatacattcaaacataaatcattttac 241  Q
    ||||||||||| ||||||||||| |||| |||| |||||||| | |||||| | ||||||||||||| |||||    
T  40642939 caattgattttagtcttaaattcattgtcaaatctacttttacacaaatacgtccaaacataaatcactttac 40643011  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 204 - 241
Target Start/End: Complemental strand, 6953551 - 6953514
Alignment:
Q  204 acttttatataaatacattcaaacataaatcattttac 241  Q
    ||||||| ||||||||||||||||||||| ||||||||    
T  6953551 acttttacataaatacattcaaacataaaccattttac 6953514  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 147 - 241
Target Start/End: Original strand, 7206302 - 7206396
Alignment:
Q  147 aatttgtagcttttggtctcttcaattgatttttgtcttaaattcgttgttaaatatacttttatataaatacattcaaacataaatcattttac 241  Q
    ||||||||||||||||  ||| ||||||||||| | ||||||||  ||||||||| || ||||| |||||||||| |||| |||||||| |||||    
T  7206302 aatttgtagcttttggcttctacaattgattttagccttaaatttattgttaaatctagttttacataaatacatccaaatataaatcactttac 7206396  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 235
Target Start/End: Original strand, 35105173 - 35105266
Alignment:
Q  142 gctataatttgtagcttttggtctcttcaattgatttttgtcttaaattcgttgttaaatatacttttatataaatacattcaaacataaatca 235  Q
    |||||||||||||| ||||||| ||| ||||||| ||| | ||||||||| | | |||||  ||||||| ||||| |||| |||||||||||||    
T  35105173 gctataatttgtagtttttggtttctacaattgactttagccttaaattcatcgataaatccacttttacataaaaacatccaaacataaatca 35105266  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 235
Target Start/End: Original strand, 38453371 - 38453458
Alignment:
Q  148 atttgtagcttttggtctcttcaattgatttttgtcttaaattcgttgttaaatatacttttatataaatacattcaaacataaatca 235  Q
    ||||||| ||||||   ||| ||||||||||| | ||||||||| ||| |||||  ||||||| ||||||||||| ||||||||||||    
T  38453371 atttgtaacttttgacttctacaattgattttagccttaaattcattgataaatccacttttacataaatacattaaaacataaatca 38453458  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 233
Target Start/End: Original strand, 32112009 - 32112100
Alignment:
Q  142 gctataatttgtagcttttggtctcttcaattgatttttgtcttaaattcgttgttaaatatacttttatataaatacattcaaacataaat 233  Q
    |||| ||||||||||||||||  | |  |||||||||| | ||||||||| |||||||||  ||||||| ||||||| || |||||||||||    
T  32112009 gctacaatttgtagcttttggcttttagaattgattttagacttaaattcattgttaaatccacttttacataaataaatccaaacataaat 32112100  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 232
Target Start/End: Complemental strand, 44489479 - 44489396
Alignment:
Q  149 tttgtagcttttggtctcttcaattgatttttgtcttaaattcgttgttaaatatacttttatataaatacattcaaacataaa 232  Q
    ||||||||||||||| ||| ||||||||||| ||||| ||||| ||||| |||  |||||||  |||||| || ||||||||||    
T  44489479 tttgtagcttttggtttctacaattgattttagtcttgaattcattgttcaattcacttttacctaaatatatccaaacataaa 44489396  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 229
Target Start/End: Original strand, 36306980 - 36307067
Alignment:
Q  142 gctataatttgtagcttttggtctcttcaattgatttttgtcttaaattcgttgttaaatatacttttatataaatacattcaaacat 229  Q
    |||| ||||| |||||||||   ||| ||||||||||| | ||||||||  |||||||||  |||||||||||||||||| |||||||    
T  36306980 gctacaatttatagcttttgtcttctacaattgattttagccttaaatttattgttaaatccacttttatataaatacatacaaacat 36307067  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 241
Target Start/End: Original strand, 411790 - 411838
Alignment:
Q  193 ttgttaaatatacttttatataaatacattcaaacataaatcattttac 241  Q
    |||||||||  ||||||||||||| |||| |||||||||||||||||||    
T  411790 ttgttaaatcaacttttatataaacacatccaaacataaatcattttac 411838  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 233
Target Start/End: Complemental strand, 4007267 - 4007182
Alignment:
Q  147 aatttgtagcttttggtctcttcaattgatttttgtcttaaattcgttgttaaatatacttttatataaatacattcaaacataaat 233  Q
    ||||||||| |||||   ||| ||||||||||| | ||||||||| ||| |||||  ||||||| ||||||||| ||||||||||||    
T  4007267 aatttgtagtttttgccttctgcaattgattttagccttaaattcattgataaatccacttttacataaataca-tcaaacataaat 4007182  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 241
Target Start/End: Original strand, 10918576 - 10918670
Alignment:
Q  147 aatttgtagcttttggtctcttcaattgatttttgtcttaaattcgttgttaaatatacttttatataaatacattcaaacataaatcattttac 241  Q
    ||||||||||||||||  ||| ||| || |||| | ||||||||  |||| ||||  ||||||| | |||||||| ||||||||||||| |||||    
T  10918576 aatttgtagcttttggcttctacaaatggttttagccttaaatttattgtcaaatccacttttacacaaatacatccaaacataaatcactttac 10918670  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 232
Target Start/End: Complemental strand, 9722332 - 9722282
Alignment:
Q  182 tcttaaattcgttgttaaatatacttttatataaatacattcaaacataaa 232  Q
    |||||||||  || ||||||||||||||| ||||||||||| |||||||||    
T  9722332 tcttaaatttattattaaatatacttttacataaatacattaaaacataaa 9722282  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 241
Target Start/End: Original strand, 38516306 - 38516364
Alignment:
Q  183 cttaaattcgttgttaaatatacttttatataaatacattcaaacataaatcattttac 241  Q
    ||||||||| ||||||||  || ||||| |||||||||| ||||||||||||| |||||    
T  38516306 cttaaattcattgttaaaactatttttacataaatacatccaaacataaatcactttac 38516364  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 240
Target Start/End: Complemental strand, 32888965 - 32888929
Alignment:
Q  204 acttttatataaatacattcaaacataaatcatttta 240  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  32888965 acttttacataaatatattcaaacataaatcatttta 32888929  T

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