View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7897_low_1 (Length: 252)
Name: NF7897_low_1
Description: NF7897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7897_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 17 - 233
Target Start/End: Original strand, 5031155 - 5031371
Alignment:
| Q |
17 |
atatgtatgtatgaaagtgaacatgaattaaactttgtattataaatttaataatttaaaattgaacataatttgaatatatgcagtactgtcaccaaaa |
116 |
Q |
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| T |
5031155 |
atatgtatgtatgaaagtgaacataaattaaactttgtattataaatttaatagtttaaaattgaacataatttgaatatatgcagtactgtcaccaaaa |
5031254 |
T |
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| Q |
117 |
aacggcttgtgtacgaccttaaagcaagcaatataatgcttgacaagaattataatgcaagtttaggtgatttgggatcagcatatgcagtagagaatga |
216 |
Q |
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| T |
5031255 |
aacggcttgtgtacgaccttaaagcaagcaatataatgcttgacaagaattataatgcaagtttaggtgatttgggatcagcatatgcagtagagaatga |
5031354 |
T |
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| Q |
217 |
aaaaacatcctatgagt |
233 |
Q |
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| T |
5031355 |
aaaaacatcctatgagt |
5031371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 230
Target Start/End: Complemental strand, 10128627 - 10128528
Alignment:
| Q |
131 |
gaccttaaagcaagcaatataatgcttgacaagaattataatgcaagtttaggtgatttgggatcagcatatgcagtagagaatgaaaaaacatcctatg |
230 |
Q |
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| T |
10128627 |
gacctgaaagcaagcaacataatgctagacgttgatttcaatgcacgtttaggtgatttcggcttagcacgtgcactagagaatgaaaaaacatcgtatg |
10128528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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