View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7898_high_1 (Length: 710)

Name: NF7898_high_1
Description: NF7898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7898_high_1
NF7898_high_1
[»] chr3 (1 HSPs)
chr3 (11-710)||(41026368-41027066)


Alignment Details
Target: chr3 (Bit Score: 676; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 676; E-Value: 0
Query Start/End: Original strand, 11 - 710
Target Start/End: Complemental strand, 41027066 - 41026368
Alignment:
Q  11 gtttggtgttaccgttgactttatttatcgacaaaaactttaatgttgtccttcaatgcagtttgattggtgctactgtgattgttattgggttttattc 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41027066 gtttggtgttaccgttgactttatttatcgacaaaaactttaatgttgtccttcaatgcagtttgattggtgctactgtgattgttattgggttttattc 41026967  T
Q  111 tgtactgtgggggaaatccaaagatattgaagcgagaagcttggaatcaagaggcaagcagacccctcttttgaaggaaaacagcagtgaagacgtatga 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41026966 tgtactgtgggggaaatccaaagatattgaagcgagaagcttggaatcaagaggcaagcagacccctcttttgaaggaaaacagcagtgaagacgtatga 41026867  T
Q  211 agttgttgttagttcatttaaaaggatgctacaattctgcaatgaattagactgtttcaattgttttactcagagtaaaggaaacaactctgactctgag 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  41026866 agttgttgttagttcatttaaaaggatgctacaattctgcaatgaattagactgtttcaattgttttactcagagtaaaggaaacaactttgactctgag 41026767  T
Q  311 aagtatataatttttctcttttaagggggcatggatagttttgtgattaaagctataggtcaaatcatcaagaactatttgaattcaaatggtttaataa 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41026766 aagtatataatttttctcttttaagggggcatggatagttttgtgattaaagctataggtcaaatcatcaagaactatttgaattcaaatggtttaataa 41026667  T
Q  411 tagaacagaatgttgtcaattgattcatatagccaaccagccaaccccatatagtgataaaagtctttgattgttgttgccagaaaaacttcgaagattg 510  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41026666 tagaacagaa-gttgtcaattgattcatatagccaaccagccaaccccatatagtgataaaagtctttgattgttgttgccagaaaaacttcgaagattg 41026568  T
Q  511 ttgttgttaatgtgggtctaggagggagatcaatatattactagtttgaaggtgagttgtaaccttttttgtttgcaaaatcttgaagaaaaactattgt 610  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  41026567 ttgttgttaatgtgggtctaggagggagatcaatatattactagtttgaaggtgagttgcaaccttttttgtttgcaaaatcttgaagaaaaactattgt 41026468  T
Q  611 tgtaatactatgtaaggtatatacagtttacaaacactctgtttgattacaatacaactgcgaaagatatcaatctaaaattattgggaagtctttgaaa 710  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  41026467 tgtaatactatgtaaggtatatacagtttacaaacactctgtttgattacaatacaactgcgaaagatatcaatctaaaattcttgggaattctttgaaa 41026368  T

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