View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7898_high_11 (Length: 243)
Name: NF7898_high_11
Description: NF7898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7898_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 39270255 - 39270029
Alignment:
| Q |
1 |
catcaacatttaattctaattatttattatggcaaaaaacatgaaactcatatagatacattattattatggtcacatatctatgactacaagaacacta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
39270255 |
catcaacatttaattctaattatttattatggcaaaaaacatgaaactcatatagatacattattattatggtcacatatctatgactacaaaaacacta |
39270156 |
T |
|
| Q |
101 |
accatggtcatatatacacgtggcgacacgtgtagggttttgtaagtatatgagtgaggtgataaaacnnnnnnntatatggagctttcactatcacaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
39270155 |
accatggtcatatatacacgtggcgacacgtgtagggttttgtaagtatatgagtgaggtgataaaacaaaaaaatatatggagctttcactatcacaaa |
39270056 |
T |
|
| Q |
201 |
aatagcatgtttgagaaagccacgtgt |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
39270055 |
aatagcatgtttgagaaagccacgtgt |
39270029 |
T |
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