View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7898_high_4 (Length: 348)
Name: NF7898_high_4
Description: NF7898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7898_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 19 - 342
Target Start/End: Original strand, 801065 - 801386
Alignment:
| Q |
19 |
cctacaacaaatgatctcaagtagcataactccatagctgaaaacatcaacttttgcagttattggtgcactccttaaccattcaggtgctatgtacctt |
118 |
Q |
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| T |
801065 |
cctacaacaaatgatctcaagtagcataactccatagctgaaaacatcaacttttgcagttatcggtgcactccttaaccattcaggtgctatgtaccct |
801164 |
T |
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| Q |
119 |
attgtccctctaaaatttgtacttattctggtttgatctttgttcaaaagcttggaaagtccaaaatctgcaatctttgcaatatgattagcatcaagta |
218 |
Q |
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| T |
801165 |
attgtccctctaaaatttgtacttgttctggtttgatctttgttcaaaagcttggaaagtccaaaatctgcaatctttgcaatatgattagcatcaagta |
801264 |
T |
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| Q |
219 |
acacattttgtggcttgatatcacaatatgtatgatctgcgtttcacactcttcatgcaagtagagtaagcctcttgctattccaagagccatttcaacc |
318 |
Q |
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| T |
801265 |
acacattttgtggcttgatatcaca--atgtatgatctgcgtttcacactcttcatgcaagtagagtaagcctcttgctattccaagagccatttcaacc |
801362 |
T |
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| Q |
319 |
ctttgactccattgaggtctctct |
342 |
Q |
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| T |
801363 |
ctttgactccattgaggtctctct |
801386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 241
Target Start/End: Complemental strand, 11041097 - 11041068
Alignment:
| Q |
212 |
tcaagtaacacattttgtggcttgatatca |
241 |
Q |
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| T |
11041097 |
tcaagtaacacattttgtggcttgatatca |
11041068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 240
Target Start/End: Complemental strand, 11026394 - 11026366
Alignment:
| Q |
212 |
tcaagtaacacattttgtggcttgatatc |
240 |
Q |
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| T |
11026394 |
tcaagtaacacattttgtggcttgatatc |
11026366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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