View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7898_high_6 (Length: 332)

Name: NF7898_high_6
Description: NF7898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7898_high_6
NF7898_high_6
[»] chr5 (5 HSPs)
chr5 (18-332)||(41900329-41900643)
chr5 (27-332)||(32268442-32268747)
chr5 (50-238)||(41886474-41886662)
chr5 (192-237)||(28532815-28532860)
chr5 (203-239)||(29021797-29021833)
[»] chr4 (9 HSPs)
chr4 (42-152)||(645194-645304)
chr4 (128-237)||(553761-553870)
chr4 (193-237)||(3437630-3437674)
chr4 (97-151)||(1545952-1546006)
chr4 (51-125)||(21833142-21833216)
chr4 (185-242)||(2391266-2391323)
chr4 (192-237)||(7308553-7308598)
chr4 (205-237)||(1755555-1755587)
chr4 (185-237)||(2381638-2381690)
[»] chr7 (2 HSPs)
chr7 (185-237)||(10615715-10615767)
chr7 (108-158)||(15091524-15091574)
[»] chr6 (7 HSPs)
chr6 (97-152)||(11935952-11936007)
chr6 (97-152)||(11947932-11947987)
chr6 (185-237)||(6417094-6417146)
chr6 (185-238)||(6423906-6423959)
chr6 (121-239)||(6395537-6395652)
chr6 (185-235)||(19633104-19633154)
chr6 (204-237)||(8913441-8913474)
[»] chr3 (4 HSPs)
chr3 (97-152)||(1657614-1657669)
chr3 (42-237)||(51113056-51113251)
chr3 (185-237)||(51763392-51763444)
chr3 (185-237)||(13469651-13469703)
[»] chr8 (6 HSPs)
chr8 (97-152)||(28245972-28246027)
chr8 (128-237)||(17642880-17642989)
chr8 (271-322)||(27923092-27923143)
chr8 (194-237)||(32151970-32152013)
chr8 (107-160)||(34935911-34935964)
chr8 (185-237)||(17635658-17635710)
[»] chr1 (4 HSPs)
chr1 (43-237)||(9587263-9587456)
chr1 (173-261)||(7555176-7555264)
chr1 (205-237)||(19467453-19467485)
chr1 (118-158)||(33161279-33161319)
[»] scaffold1155 (1 HSPs)
scaffold1155 (118-222)||(1821-1925)
[»] scaffold0345 (1 HSPs)
scaffold0345 (118-222)||(8291-8395)
[»] scaffold0105 (1 HSPs)
scaffold0105 (118-222)||(30584-30688)
[»] chr2 (1 HSPs)
chr2 (115-239)||(45244780-45244904)


Alignment Details
Target: chr5 (Bit Score: 295; Significance: 1e-166; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 18 - 332
Target Start/End: Original strand, 41900329 - 41900643
Alignment:
Q  18 caaactctcccttttcttcctactctctttcatagatttaccaatctcacctccctcaatctctcgcgcttctacggtaacctcaacaaacttctatgtc 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  41900329 caaactctcccttttcttcctactctctttcatagatttaccaatctcacctccctcaatctctcgcgcttctatggtaacctcaacaaacttctttgtc 41900428  T
Q  118 aaatctctaattttccattgaaactcacatcactcaaactctcagaccaaagcgtcatccccgcatttgggtttcgagctttttccaaaaagattacaac 217  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41900429 aaatctctcattttccattgaaactcacatcactcaaactctcagaccaaagcgtcatccccgcatttgggtttcgagctttttccaaaaagattacaac 41900528  T
Q  218 tttgacctctctcacttgttacgaaatgcattatatcaacagcagcgatcttttacttatctctgactgtttccctttgttggaagttctcgacctcaga 317  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  41900529 tttgacctctctcacttgttacgaaatgcattatatcaatagcagcgatcttttacttatctctgactgtttccctttgttggaagttctcgatctcaga 41900628  T
Q  318 taccccacacaatgc 332  Q
    |||||||||||||||    
T  41900629 taccccacacaatgc 41900643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 27 - 332
Target Start/End: Complemental strand, 32268747 - 32268442
Alignment:
Q  27 ccttttcttcctactctctttcatagatttaccaatctcacctccctcaatctctcgcgcttctacggtaacctcaacaaacttctatgtcaaatctcta 126  Q
    |||||||||||||||||||| | |||||| ||||| |||||||||||| | |||||| | ||| ||||||| |||||||| ||||| ||||||||||||     
T  32268747 ccttttcttcctactctcttgcgtagattcaccaacctcacctccctcgacctctcgtgtttcaacggtaaactcaacaagcttctctgtcaaatctctc 32268648  T
Q  127 attttccattgaaactcacatcactcaaactctcagaccaaagcgtcatccccgcatttgggtttcgagctttttccaaaaagattacaactttgacctc 226  Q
     |||||||||||||||||| |||||||| |||||| || || || |||| ||| || ||||||| |   ||||||| || ||||||||||||||||||||    
T  32268647 gttttccattgaaactcacgtcactcaatctctcaaacaaatgcatcattcccacaattgggttgcagactttttcgaagaagattacaactttgacctc 32268548  T
Q  227 tctcacttgttacgaaatgcattatatcaacagcagcgatcttttacttatctctgactgtttccctttgttggaagttctcgacctcagataccccaca 326  Q
    ||||||||||| | ||||||| |||||||| |||||||||||| ||||||||||| | |||||||| ||||||||||| || |||||||  |||||||||    
T  32268547 tctcacttgttccaaaatgcaatatatcaatagcagcgatcttgtacttatctctcattgtttccccttgttggaagtcctagacctcaattaccccaca 32268448  T
Q  327 caatgc 332  Q
    ||||||    
T  32268447 caatgc 32268442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 50 - 238
Target Start/End: Original strand, 41886474 - 41886662
Alignment:
Q  50 tagatttaccaatctcacctccctcaatctctcgcgcttctacggtaacctcaacaaacttctatgtcaaatctctaattttccattgaaactcacatca 149  Q
    |||||| | |||||||||||| ||| | || ||  |||||  ||||||||||| |||||||||  | |||||||||||||||||||||||||||||||||    
T  41886474 tagattcatcaatctcacctctctcgacctttctagcttccgcggtaacctcagcaaacttctcggccaaatctctaattttccattgaaactcacatca 41886573  T
Q  150 ctcaaactctcagaccaaagcgtcatccccgcatttgggtttcgagctttttccaaaaagattacaactttgacctctctcacttgtta 238  Q
    ||||| || ||  | ||| |  | || ||| ||  |||||| |||| |||| ||||||||||||||||||| |||||||||| ||||||    
T  41886574 ctcaatctttcgtatcaacgtattattcccacaaatgggttgcgagtttttgccaaaaagattacaactttaacctctctcatttgtta 41886662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 237
Target Start/End: Complemental strand, 28532860 - 28532815
Alignment:
Q  192 cgagctttttccaaaaagattacaactttgacctctctcacttgtt 237  Q
    |||||||||||  |||| |||||||||||||||||| |||||||||    
T  28532860 cgagctttttcacaaaacattacaactttgacctctttcacttgtt 28532815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 239
Target Start/End: Complemental strand, 29021833 - 29021797
Alignment:
Q  203 caaaaagattacaactttgacctctctcacttgttac 239  Q
    |||||| ||||| ||||||||||||||||||||||||    
T  29021833 caaaaacattactactttgacctctctcacttgttac 29021797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 42 - 152
Target Start/End: Complemental strand, 645304 - 645194
Alignment:
Q  42 ctctttcatagatttaccaatctcacctccctcaatctctcgcgcttctacggtaacctcaacaaacttctatgtcaaatctctaattttccattgaaac 141  Q
    |||||||| || |||||||| || | ||||||  | |||||| ||| ||  ||| |||||||||| |||||||| |||||||||| ||||||||||| ||    
T  645304 ctctttcaaaggtttaccaaccttaactcccttgacctctcgtgctactcgggttacctcaacaagcttctatgccaaatctctagttttccattgagac 645205  T
Q  142 tcacatcactc 152  Q
    |||||||||||    
T  645204 tcacatcactc 645194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 128 - 237
Target Start/End: Complemental strand, 553870 - 553761
Alignment:
Q  128 ttttccattgaaactcacatcactcaaactctcagaccaaagcgtcatccccgcatttgggtttcgagctttttccaaaaagattacaactttgacctct 227  Q
    |||||||||||| |||||||||||| | |||||  |  ||  |  ||| ||||||  |||||| |||||||| ||| |||| ||||||||||||||||||    
T  553870 ttttccattgaacctcacatcactcgatctctcccaaaaacccaccattcccgcaaatgggttgcgagctttctcccaaaacattacaactttgacctct 553771  T
Q  228 ctcacttgtt 237  Q
    ||||| ||||    
T  553770 ctcacctgtt 553761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 237
Target Start/End: Original strand, 3437630 - 3437674
Alignment:
Q  193 gagctttttccaaaaagattacaactttgacctctctcacttgtt 237  Q
    ||||||| ||| ||||||||||||||||||||||||||| |||||    
T  3437630 gagctttctcccaaaagattacaactttgacctctctcagttgtt 3437674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 151
Target Start/End: Complemental strand, 1546006 - 1545952
Alignment:
Q  97 acctcaacaaacttctatgtcaaatctctaattttccattgaaactcacatcact 151  Q
    |||||||||| ||||| |  |||||||||| ||||||||||||||||||| ||||    
T  1546006 acctcaacaagcttctctaccaaatctctacttttccattgaaactcacaacact 1545952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 125
Target Start/End: Original strand, 21833142 - 21833216
Alignment:
Q  51 agatttaccaatctcacctccctcaatctctcgcgcttctacggtaacctcaacaaacttctatgtcaaatctct 125  Q
    ||||| ||||| || |||||||| || ||||| |||||| ||||| |||||||||| |||||  |||||||||||    
T  21833142 agattcaccaaccttacctcccttaacctctctcgcttccacggtgacctcaacaaccttctccgtcaaatctct 21833216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 242
Target Start/End: Original strand, 2391266 - 2391323
Alignment:
Q  185 tgggtttcgagctttttccaaaaagattacaactttgacctctctcacttgttacgaa 242  Q
    |||||| |||||||| ||||||||||| | || |||||||||||| ||||||| ||||    
T  2391266 tgggttccgagctttgtccaaaaagatgaaaaatttgacctctcttacttgttccgaa 2391323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 237
Target Start/End: Complemental strand, 7308598 - 7308553
Alignment:
Q  192 cgagctttttccaaaaagattacaactttgacctctctcacttgtt 237  Q
    |||||||| ||| | ||||||||||||||||||| |||||||||||    
T  7308598 cgagctttgtcccagaagattacaactttgacctgtctcacttgtt 7308553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 237
Target Start/End: Complemental strand, 1755587 - 1755555
Alignment:
Q  205 aaaagattacaactttgacctctctcacttgtt 237  Q
    |||||||||||||||||||||||||||| ||||    
T  1755587 aaaagattacaactttgacctctctcacatgtt 1755555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 237
Target Start/End: Original strand, 2381638 - 2381690
Alignment:
Q  185 tgggtttcgagctttttccaaaaagattacaactttgacctctctcacttgtt 237  Q
    |||||| |||||||| ||||||||||| | || |||||||||||| |||||||    
T  2381638 tgggttccgagctttgtccaaaaagatgaaaaatttgacctctcttacttgtt 2381690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 185 - 237
Target Start/End: Complemental strand, 10615767 - 10615715
Alignment:
Q  185 tgggtttcgagctttttccaaaaagattacaactttgacctctctcacttgtt 237  Q
    |||||| |||||||| ||| |||||||||||||||||||||||||||||||||    
T  10615767 tgggttacgagctttctcccaaaagattacaactttgacctctctcacttgtt 10615715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 158
Target Start/End: Original strand, 15091524 - 15091574
Alignment:
Q  108 cttctatgtcaaatctctaattttccattgaaactcacatcactcaaactc 158  Q
    ||||| ||||||||||| | ||| ||||||||||||| |||||||||||||    
T  15091524 cttctctgtcaaatctcaattttcccattgaaactcaaatcactcaaactc 15091574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 97 - 152
Target Start/End: Original strand, 11935952 - 11936007
Alignment:
Q  97 acctcaacaaacttctatgtcaaatctctaattttccattgaaactcacatcactc 152  Q
    |||||||||| |||||||| |||||||||| ||||||||||| |||||||||||||    
T  11935952 acctcaacaagcttctatgccaaatctctagttttccattgagactcacatcactc 11936007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 97 - 152
Target Start/End: Original strand, 11947932 - 11947987
Alignment:
Q  97 acctcaacaaacttctatgtcaaatctctaattttccattgaaactcacatcactc 152  Q
    |||||||||| |||||||| |||||||||| ||||||||||| |||||||||||||    
T  11947932 acctcaacaagcttctatgccaaatctctagttttccattgagactcacatcactc 11947987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 185 - 237
Target Start/End: Complemental strand, 6417146 - 6417094
Alignment:
Q  185 tgggtttcgagctttttccaaaaagattacaactttgacctctctcacttgtt 237  Q
    |||||| |||||||| ||| |||||| ||||||||||||||||||||||||||    
T  6417146 tgggttacgagctttctcccaaaagaatacaactttgacctctctcacttgtt 6417094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 185 - 238
Target Start/End: Complemental strand, 6423959 - 6423906
Alignment:
Q  185 tgggtttcgagctttttccaaaaagattacaactttgacctctctcacttgtta 238  Q
    |||||| |||||||| ||| |||| || ||||||||||||||||||||||||||    
T  6423959 tgggttgcgagctttctcccaaaacataacaactttgacctctctcacttgtta 6423906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 239
Target Start/End: Complemental strand, 6395652 - 6395537
Alignment:
Q  121 tctctaattttccattgaaactcacatcactcaaactctcagaccaaagcgtcatccccgcatttgggtttcgagctttttccaaaaagattacaacttt 220  Q
    |||| ||||| |||||||||||||||||||||||||||   ||| || ||  | | ||| ||  |||||| | |||| | ||| |||| |||||||||||    
T  6395652 tctcaaatttcccattgaaactcacatcactcaaactc---gacgaatgctactttcccacagatgggttgcaagctctctcccaaaatattacaacttt 6395556  T
Q  221 gacctctctcacttgttac 239  Q
    ||||||||||| |||||||    
T  6395555 gacctctctcagttgttac 6395537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 235
Target Start/End: Complemental strand, 19633154 - 19633104
Alignment:
Q  185 tgggtttcgagctttttccaaaaagattacaactttgacctctctcacttg 235  Q
    |||||| |||||||| ||| |||  ||||||||||||||||||||||||||    
T  19633154 tgggttgcgagctttctccgaaagcattacaactttgacctctctcacttg 19633104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 237
Target Start/End: Original strand, 8913441 - 8913474
Alignment:
Q  204 aaaaagattacaactttgacctctctcacttgtt 237  Q
    |||||||||||||||||||||||||||| |||||    
T  8913441 aaaaagattacaactttgacctctctcaattgtt 8913474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 97 - 152
Target Start/End: Complemental strand, 1657669 - 1657614
Alignment:
Q  97 acctcaacaaacttctatgtcaaatctctaattttccattgaaactcacatcactc 152  Q
    |||||||||| |||||||| |||||||||| ||||||||||| |||||||||||||    
T  1657669 acctcaacaagcttctatgccaaatctctagttttccattgagactcacatcactc 1657614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 237
Target Start/End: Original strand, 51113056 - 51113251
Alignment:
Q  42 ctctttcatagatttaccaatctcacctccctcaatctctcgcgcttctacggtaacctcaacaaacttctatgtcaaatctctaattttccattgaaac 141  Q
    ||||||| |||||| ||||| |||||||||||||| ||  |  ||| || |  | |||||||||| || |||| | ||||||||  ||| ||||||||||    
T  51113056 ctctttcttagattcaccaacctcacctccctcaaccttacatgctactcctttgacctcaacaacctgctatttgaaatctctcgtttcccattgaaac 51113155  T
Q  142 tcacatcactcaaactctcagaccaaagcgtcatccccgcatttgggtttcgagctttttccaaaaagattacaactttgacctctctcacttgtt 237  Q
    | || ||||||||  ||||  || ||||| | || ||| ||  ||| || |||||||| ||  |||| ||||||||| ||||||||||||||||||    
T  51113156 ttacttcactcaatatctccaacaaaagcattattcccacaaatggattgcgagctttctcggaaaatattacaactctgacctctctcacttgtt 51113251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 237
Target Start/End: Original strand, 51763392 - 51763444
Alignment:
Q  185 tgggtttcgagctttttccaaaaagattacaactttgacctctctcacttgtt 237  Q
    |||||| |||| ||||||  ||||||||||||||||||| |||||||||||||    
T  51763392 tgggttgcgagttttttcacaaaagattacaactttgacatctctcacttgtt 51763444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 237
Target Start/End: Original strand, 13469651 - 13469703
Alignment:
Q  185 tgggtttcgagctttttccaaaaagattacaactttgacctctctcacttgtt 237  Q
    |||||| |||||||| ||| |||||| ||||||  ||||||||||||||||||    
T  13469651 tgggttacgagctttctcccaaaagaatacaacgctgacctctctcacttgtt 13469703  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 152
Target Start/End: Original strand, 28245972 - 28246027
Alignment:
Q  97 acctcaacaaacttctatgtcaaatctctaattttccattgaaactcacatcactc 152  Q
    |||||||||| |||||||| |||||||||| ||||||||||| | |||||||||||    
T  28245972 acctcaacaagcttctatgccaaatctctagttttccattgagattcacatcactc 28246027  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 128 - 237
Target Start/End: Original strand, 17642880 - 17642989
Alignment:
Q  128 ttttccattgaaactcacatcactcaaactctcagaccaaagcgtcatccccgcatttgggtttcgagctttttccaaaaagattacaactttgacctct 227  Q
    ||||||||||||||||||||||||||| |||||  ||||   |  ||| ||| |   |||||| | |||||| ||| | || ||||||||||||||||||    
T  17642880 ttttccattgaaactcacatcactcaatctctccaaccatctcaccattcccaccaatgggttacaagctttctcccagaatattacaactttgacctct 17642979  T
Q  228 ctcacttgtt 237  Q
    ||||||||||    
T  17642980 ctcacttgtt 17642989  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 271 - 322
Target Start/End: Complemental strand, 27923143 - 27923092
Alignment:
Q  271 tacttatctctgactgtttccctttgttggaagttctcgacctcagataccc 322  Q
    ||||||||||| | | |||||||||||||||||| ||||||||||| |||||    
T  27923143 tacttatctctcattatttccctttgttggaagtcctcgacctcagttaccc 27923092  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 194 - 237
Target Start/End: Complemental strand, 32152013 - 32151970
Alignment:
Q  194 agctttttccaaaaagattacaactttgacctctctcacttgtt 237  Q
    |||||| ||| |||| ||||||||||||||||||||||||||||    
T  32152013 agctttctcccaaaacattacaactttgacctctctcacttgtt 32151970  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 160
Target Start/End: Original strand, 34935911 - 34935964
Alignment:
Q  107 acttctatgtcaaatctctaattttccattgaaactcacatcactcaaactctc 160  Q
    ||||||||||||||| |||| ||| |||||||| || ||||||||||| |||||    
T  34935911 acttctatgtcaaatttctagtttcccattgaaccttacatcactcaatctctc 34935964  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 237
Target Start/End: Original strand, 17635658 - 17635710
Alignment:
Q  185 tgggtttcgagctttttccaaaaagattacaactttgacctctctcacttgtt 237  Q
    |||||| |||||||| |||   || ||||||||||||||||||||||||||||    
T  17635658 tgggttacgagctttctcccggaatattacaactttgacctctctcacttgtt 17635710  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 237
Target Start/End: Complemental strand, 9587456 - 9587263
Alignment:
Q  43 tctttcatagatttaccaatctcacctccctcaatctctcgcgcttctacggtaacctcaacaaacttctatgtcaaatctctaattttccattgaaact 142  Q
    ||||||| ||||| ||||| |||||||||||| | ||| || ||| | | ||| |||||||| | ||||||| |||| |||||  ||| |||||||||||    
T  9587456 tctttcaaagattcaccaacctcacctccctcgacctcacg-gctacaaaggtgacctcaacgagcttctatctcaagtctcttgtttcccattgaaact 9587358  T
Q  143 cacatcactcaaactctcagaccaaagcgtcatccccgcatttgggtttcgagctttttccaaaaagattacaactttgacctctctcacttgtt 237  Q
    |||||| ||||| |||||    |||  |  ||| |||||| ||||||| |  ||||| |||  |||||||||||| ||||| ||||||| |||||    
T  9587357 cacatcgctcaatctctccagtcaatcctgcattcccgcaattgggttgcatgctttctccttaaagattacaacgttgacatctctcatttgtt 9587263  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 261
Target Start/End: Complemental strand, 7555264 - 7555176
Alignment:
Q  173 catccccgcatttgggtttcgagctttttccaaaaagattacaactttgacctctctcacttgttacgaaatgcattatatcaacagca 261  Q
    |||||| ||| |||| || |||||||| ||| |||| ||||||||||| ||||| |||||||||| | ||||| ||| |||||| ||||    
T  7555264 catccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaaaatggattctatcaatagca 7555176  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 237
Target Start/End: Original strand, 19467453 - 19467485
Alignment:
Q  205 aaaagattacaactttgacctctctcacttgtt 237  Q
    |||| ||||||||||||||||||||||||||||    
T  19467453 aaaatattacaactttgacctctctcacttgtt 19467485  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 158
Target Start/End: Complemental strand, 33161319 - 33161279
Alignment:
Q  118 aaatctctaattttccattgaaactcacatcactcaaactc 158  Q
    |||||| |||||| |||||||||||| ||||||||||||||    
T  33161319 aaatctataatttcccattgaaactctcatcactcaaactc 33161279  T

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Target: scaffold1155 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1155
Description:

Target: scaffold1155; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 222
Target Start/End: Original strand, 1821 - 1925
Alignment:
Q  118 aaatctctaattttccattgaaactcacatcactcaaactctcagaccaaagcgtcatccccgcatttgggtttcgagctttttccaaaaagattacaac 217  Q
    ||||||||  ||| |||||||| |||||||||||||| |||||  |||||  | | || ||||||  |||||| |||| ||| ||| |||| ||||||||    
T  1821 aaatctctcgtttcccattgaacctcacatcactcaatctctcctaccaacccataattcccgcagatgggttgcgagttttatcccaaaatattacaac 1920  T
Q  218 tttga 222  Q
    |||||    
T  1921 tttga 1925  T

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Target: scaffold0345 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 222
Target Start/End: Complemental strand, 8395 - 8291
Alignment:
Q  118 aaatctctaattttccattgaaactcacatcactcaaactctcagaccaaagcgtcatccccgcatttgggtttcgagctttttccaaaaagattacaac 217  Q
    ||||||||  ||| |||||||| |||||||||||||| |||||  |||||  | | || ||||||  |||||| |||| ||| ||| |||| ||||||||    
T  8395 aaatctctcgtttcccattgaacctcacatcactcaatctctcctaccaacccataattcccgcagatgggttgcgagttttatcccaaaatattacaac 8296  T
Q  218 tttga 222  Q
    |||||    
T  8295 tttga 8291  T

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Target: scaffold0105 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 222
Target Start/End: Original strand, 30584 - 30688
Alignment:
Q  118 aaatctctaattttccattgaaactcacatcactcaaactctcagaccaaagcgtcatccccgcatttgggtttcgagctttttccaaaaagattacaac 217  Q
    ||||||||  ||| |||||||| |||||||||||||| |||||  |||||  | | || ||||||  |||||| |||| ||| ||| |||| ||||||||    
T  30584 aaatctctcgtttcccattgaacctcacatcactcaatctctcctaccaacccataattcccgcagatgggttgcgagttttatcccaaaatattacaac 30683  T
Q  218 tttga 222  Q
    |||||    
T  30684 tttga 30688  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 239
Target Start/End: Original strand, 45244780 - 45244904
Alignment:
Q  115 gtcaaatctctaattttccattgaaactcacatcactcaaactctcagaccaaagcgtcatccccgcatttgggtttcgagctttttccaaaaagattac 214  Q
    ||||||||||| | || ||||||||| || | |||||| | ||||| |||||||||  ||| |||||   |||||| | |||||| ||| |||  ||||     
T  45244780 gtcaaatctctcagttaccattgaaaatctcgtcactctatctctccgaccaaagcaccattcccgcgaatgggttgcaagctttctcccaaactattag 45244879  T
Q  215 aactttgacctctctcacttgttac 239  Q
    || |||||||||||||| |||||||    
T  45244880 aaatttgacctctctcatttgttac 45244904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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