View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7898_high_7 (Length: 318)
Name: NF7898_high_7
Description: NF7898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7898_high_7 |
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| [»] chr5 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 19 - 318
Target Start/End: Complemental strand, 42464001 - 42463702
Alignment:
| Q |
19 |
atacctggaaccaattaggattctcaggactttgctgagcagcaagaacctcaacaaaaccttcatttttgtagccaccgaggttgcttgcataagcacg |
118 |
Q |
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| T |
42464001 |
atacctggaaccaattaggattctcaggactttgctgagcagcaagaacctcaacaaaaccttcatttttgtagccaccgaggttgcttgcataagcacg |
42463902 |
T |
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| Q |
119 |
agaaagatgtcgattgagggacgcagaattgaattgagtaagaacatagatcttcgatatgttgctgtttaagcagttgctaacaggaatatcaatgagt |
218 |
Q |
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| T |
42463901 |
agaaagatgtcgattgagggacgcagaattgaattgagtaagaacatagatcttagatatgttgctgtttaagcagttgctaacaggtatatcaatgagt |
42463802 |
T |
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| Q |
219 |
ctatagttagctccaagaggaacagctggttttgctcgcttcttggtgagtggatatagacgagtaccagcaccacctccaagtataatgccaagtacac |
318 |
Q |
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| T |
42463801 |
ctatagttagctccaagaggaacagctggttttgctctcttcttggtgagtggatatagacgagtaccagcaccacctccaagtataatgccaagtacac |
42463702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 131; Significance: 6e-68; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 20 - 318
Target Start/End: Complemental strand, 37078065 - 37077767
Alignment:
| Q |
20 |
tacctggaaccaattaggattctcaggactttgctgagcagcaagaacctcaacaaaaccttcatttttgtagccaccgaggttgcttgcataagcacga |
119 |
Q |
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| T |
37078065 |
tacctggaaccagtttggattctcaggactctgctgtgcagcaagaacctcaacgaaaccttcatttttgtaaccacccatgttgctcgcatatgcacgg |
37077966 |
T |
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| Q |
120 |
gaaagatgtcgattgagggacgcagaattgaattgagtaagaacatagatcttcgatatgttgctgtttaagcagttgctaacaggaatatcaatgagtc |
219 |
Q |
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| T |
37077965 |
gacaagtgcctattcaaggatgctgaattgaattgtgtgaggacgtagatctttgatatgttactgtttaggcagttgctgacagggatatcaatcagcc |
37077866 |
T |
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| Q |
220 |
tatagttagctccaagaggaacagctggttttgctcgcttcttggtgagtggatatagacgagtaccagcaccacctccaagtataatgccaagtacac |
318 |
Q |
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| T |
37077865 |
tatagtttgctccaagaggaacagctggttttgcccgcttcttggtcaatggataaagacgcgtcccggcaccccctccaagtataataccaagcacac |
37077767 |
T |
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