View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7898_high_8 (Length: 303)
Name: NF7898_high_8
Description: NF7898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7898_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 94; Significance: 7e-46; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 171 - 284
Target Start/End: Complemental strand, 33634084 - 33633971
Alignment:
| Q |
171 |
gttcgcctccgtaaccgtcctccacgtggcacatggatctcctcctccacctccgttttcctccgattctcctccgatctcaacttctcctacgtcattc |
270 |
Q |
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| T |
33634084 |
gttcgcatccgtaaccgtcctccacgtggcacatggatctcctcctccacctccgctttcctccgattctcctccgatctcaacttctccgacgtcgttc |
33633985 |
T |
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| Q |
271 |
tcaccgttgacttc |
284 |
Q |
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| T |
33633984 |
tcaccgttgccttc |
33633971 |
T |
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Target: chr2; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 16 - 107
Target Start/End: Complemental strand, 33634242 - 33634151
Alignment:
| Q |
16 |
aagaagaaaagagataattcaaacaaatggcgggaacagttgcagtaagatcaaactcactgagtgacgagtgggaaatttcgttcgcacga |
107 |
Q |
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| T |
33634242 |
aagaagaaaagagataattcaaacaaatggcgggaacagttgcagtaagatcaaactcactgagtgacgagtgggaaatttcgttcgcacga |
33634151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 171 - 279
Target Start/End: Original strand, 29191750 - 29191858
Alignment:
| Q |
171 |
gttcgcctccgtaaccgtcctccacgtggcacatggatctcctcctccacctccgttttcctccgattctcctccgatctcaacttctcctacgtcattc |
270 |
Q |
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| T |
29191750 |
gttcgcctccgtaaccgtcctccacgtggcacatggatctcctcctccacctccgctttcctccgtttctcctccgatctcaacttctccgatgtcgtcc |
29191849 |
T |
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| Q |
271 |
tcaccgttg |
279 |
Q |
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| T |
29191850 |
tcaccgttg |
29191858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 104
Target Start/End: Original strand, 29191591 - 29191683
Alignment:
| Q |
21 |
gaaaagagataattcaaacaaatggcgggaacagttgcagtaagatcaa---------actcactgagtgacgagtgggaaatttcgttcgca |
104 |
Q |
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|||| |||| |||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||| |
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| T |
29191591 |
gaaaggagagaattcaaaaaaatggcgggaacagttgcagtgagatcaacaacaacaaactcactgagtgacgagtgggaaatttccttcgca |
29191683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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