View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7898_low_10 (Length: 297)
Name: NF7898_low_10
Description: NF7898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7898_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 27847410 - 27847133
Alignment:
| Q |
1 |
aatcattttcatctttcgtaaattaaaacattctgaattgtcgcatttggtgatttatgtaaaagaaaaatatttggtgaccaaaatttgctaaataaat |
100 |
Q |
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| T |
27847410 |
aatcattttcatctttcgtaaattaaaacattctgaattgtcacatttggtgatttatgtaaaagaaaaatatttggtgaccaaaatttgctaaataa-t |
27847312 |
T |
|
| Q |
101 |
tattagaaggtctaaaaacgaaatttgagatattcggtaagaaattatgaatttaattagtatacactgtcagtatacaattatcttacacgttaaatca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
27847311 |
tattagaaggtctaaaaacgaaatttgagatattcggtaagaaattataaatttaattagtatacactgtcagtgtacaattatcttacacgataaatca |
27847212 |
T |
|
| Q |
201 |
atgatgtgttgcaacttgcaacgttgatgaatataaaaacacaaaatttgtcatattcatgttgatagcttgatgcaac |
279 |
Q |
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| T |
27847211 |
atgatgtgttgcaacttgcaacgttgatgaatataaaaacacaaaatttgtcatattcatgttgatagcttgatgcaac |
27847133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 191
Target Start/End: Complemental strand, 1955419 - 1955378
Alignment:
| Q |
150 |
aatttaattagtatacactgtcagtatacaattatcttacac |
191 |
Q |
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| T |
1955419 |
aatttaattagtatacattgtcagtgtacaattattttacac |
1955378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 191
Target Start/End: Complemental strand, 18358954 - 18358909
Alignment:
| Q |
146 |
tatgaatttaattagtatacactgtcagtatacaattatcttacac |
191 |
Q |
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| T |
18358954 |
tatgaatttaattagtatactctgtcagtgtataattattttacac |
18358909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 191
Target Start/End: Complemental strand, 31053126 - 31053086
Alignment:
| Q |
151 |
atttaattagtatacactgtcagtatacaattatcttacac |
191 |
Q |
| |
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||||||||||||||||||||||| ||| |||||| |||||| |
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| T |
31053126 |
atttaattagtatacactgtcagaatataattattttacac |
31053086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 184
Target Start/End: Complemental strand, 35497910 - 35497874
Alignment:
| Q |
148 |
tgaatttaattagtatacactgtcagtatacaattat |
184 |
Q |
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|||||||||||| ||||| |||||||||||||||||| |
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| T |
35497910 |
tgaatttaattaatatactctgtcagtatacaattat |
35497874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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