View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7898_low_2 (Length: 635)

Name: NF7898_low_2
Description: NF7898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7898_low_2
NF7898_low_2
[»] chr4 (19 HSPs)
chr4 (1-619)||(2883585-2884203)
chr4 (480-620)||(2900760-2900900)
chr4 (93-221)||(2901137-2901271)
chr4 (504-611)||(2874094-2874201)
chr4 (258-384)||(18628506-18628643)
chr4 (351-420)||(54325104-54325173)
chr4 (351-419)||(30338659-30338727)
chr4 (322-420)||(7749120-7749218)
chr4 (351-420)||(46013367-46013436)
chr4 (333-394)||(43372016-43372079)
chr4 (351-418)||(21953209-21953276)
chr4 (357-420)||(46247152-46247215)
chr4 (351-405)||(927425-927479)
chr4 (351-417)||(18630617-18630683)
chr4 (351-420)||(21593079-21593147)
chr4 (351-388)||(39931371-39931408)
chr4 (351-420)||(41606120-41606189)
chr4 (356-388)||(19429560-19429592)
chr4 (258-294)||(24718746-24718782)
[»] chr2 (20 HSPs)
chr2 (502-619)||(44213458-44213575)
chr2 (491-619)||(44225619-44225747)
chr2 (491-619)||(44236432-44236560)
chr2 (351-420)||(10143106-10143175)
chr2 (351-418)||(13866825-13866892)
chr2 (351-420)||(37053528-37053597)
chr2 (315-388)||(36863654-36863729)
chr2 (249-292)||(757532-757575)
chr2 (351-418)||(5133708-5133775)
chr2 (353-420)||(28803575-28803642)
chr2 (374-420)||(12215741-12215787)
chr2 (325-420)||(18962077-18962174)
chr2 (326-469)||(42974240-42974378)
chr2 (351-388)||(7103550-7103587)
chr2 (304-394)||(11513858-11513950)
chr2 (351-420)||(33192127-33192196)
chr2 (229-302)||(41905840-41905913)
chr2 (352-404)||(14209227-14209279)
chr2 (353-417)||(17952770-17952834)
chr2 (302-387)||(36415689-36415776)
[»] chr5 (16 HSPs)
chr5 (301-415)||(28586781-28586897)
chr5 (356-418)||(37063146-37063208)
chr5 (351-404)||(14295456-14295509)
chr5 (351-420)||(19177413-19177482)
chr5 (258-301)||(7907956-7907999)
chr5 (259-302)||(13244505-13244548)
chr5 (351-418)||(16889671-16889738)
chr5 (370-420)||(7096213-7096263)
chr5 (248-302)||(10907451-10907505)
chr5 (357-469)||(20982208-20982317)
chr5 (377-469)||(26516186-26516275)
chr5 (351-388)||(583840-583877)
chr5 (351-388)||(32059656-32059693)
chr5 (351-420)||(35135729-35135798)
chr5 (347-403)||(29116993-29117049)
chr5 (304-417)||(32172590-32172705)
[»] scaffold0053 (1 HSPs)
scaffold0053 (352-420)||(20113-20181)
[»] chr8 (12 HSPs)
chr8 (252-302)||(7918728-7918778)
chr8 (371-469)||(14482090-14482185)
chr8 (252-294)||(1664450-1664492)
chr8 (302-420)||(38036128-38036248)
chr8 (301-382)||(11795064-11795147)
chr8 (321-388)||(6509338-6509407)
chr8 (301-404)||(11183495-11183600)
chr8 (351-420)||(34770826-34770895)
chr8 (299-420)||(35298490-35298614)
chr8 (351-403)||(4763869-4763921)
chr8 (252-300)||(9700076-9700124)
chr8 (370-414)||(39392747-39392791)
[»] chr6 (13 HSPs)
chr6 (302-420)||(32386579-32386699)
chr6 (351-420)||(5550066-5550135)
chr6 (372-420)||(2456886-2456933)
chr6 (351-418)||(29274296-29274363)
chr6 (252-302)||(32917270-32917320)
chr6 (352-421)||(507153-507222)
chr6 (351-420)||(2514636-2514705)
chr6 (351-420)||(4006648-4006717)
chr6 (351-420)||(10452427-10452496)
chr6 (363-420)||(24774692-24774749)
chr6 (257-302)||(30863319-30863364)
chr6 (261-302)||(33498692-33498733)
chr6 (351-387)||(9326923-9326959)
[»] chr3 (13 HSPs)
chr3 (351-420)||(20192673-20192742)
chr3 (299-404)||(24887296-24887403)
chr3 (354-420)||(27792806-27792872)
chr3 (302-388)||(23785221-23785309)
chr3 (351-396)||(31337468-31337513)
chr3 (352-404)||(49586984-49587036)
chr3 (301-405)||(34954032-34954137)
chr3 (301-388)||(1816549-1816638)
chr3 (252-294)||(45590732-45590774)
chr3 (351-416)||(40122820-40122884)
chr3 (352-420)||(1395605-1395673)
chr3 (299-388)||(2201094-2201185)
chr3 (352-420)||(41028919-41028987)
[»] chr7 (19 HSPs)
chr7 (356-420)||(7243578-7243642)
chr7 (301-420)||(28165025-28165146)
chr7 (351-420)||(31002695-31002764)
chr7 (370-417)||(2176846-2176893)
chr7 (351-420)||(5373159-5373228)
chr7 (252-302)||(23214928-23214978)
chr7 (356-418)||(31341130-31341192)
chr7 (354-420)||(33894557-33894622)
chr7 (351-420)||(3610807-3610876)
chr7 (351-420)||(9527157-9527226)
chr7 (249-302)||(22387840-22387893)
chr7 (351-404)||(30456517-30456570)
chr7 (351-388)||(31338474-31338511)
chr7 (355-415)||(1417203-1417263)
chr7 (247-291)||(5288195-5288239)
chr7 (352-420)||(24975838-24975906)
chr7 (505-577)||(39592093-39592165)
chr7 (356-388)||(46531499-46531531)
chr7 (351-415)||(49060479-49060543)
[»] scaffold0199 (1 HSPs)
scaffold0199 (252-294)||(6891-6933)
[»] chr1 (13 HSPs)
chr1 (351-403)||(15360845-15360897)
chr1 (303-339)||(52190146-52190182)
chr1 (254-296)||(49282548-49282590)
chr1 (351-420)||(4363699-4363767)
chr1 (302-388)||(4548687-4548775)
chr1 (351-416)||(17420141-17420206)
chr1 (351-388)||(40833902-40833939)
chr1 (351-420)||(45999355-45999424)
chr1 (299-339)||(7472328-7472368)
chr1 (351-415)||(15565899-15565963)
chr1 (250-302)||(17420276-17420328)
chr1 (351-387)||(28788605-28788641)
chr1 (351-403)||(52286629-52286681)
[»] scaffold0590 (1 HSPs)
scaffold0590 (370-420)||(1160-1210)
[»] scaffold0275 (1 HSPs)
scaffold0275 (370-420)||(2765-2815)


Alignment Details
Target: chr4 (Bit Score: 599; Significance: 0; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 599; E-Value: 0
Query Start/End: Original strand, 1 - 619
Target Start/End: Original strand, 2883585 - 2884203
Alignment:
Q  1 tcaacatttattgcaacaaaacaagttaatgaaattaattctaaggcaataaatattaacacattctattgactttggatatacaggcaatggcaactgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2883585 tcaacatttattgcaacaaaacaagttaatgaaattaattctaaggcaataaatattaacacattctattgactttggatatacaggcaatggcaactgg 2883684  T
Q  101 aggccaacaggaaagtgtagcaactgattatgtactaaaggtattgccaaattgagattctctcattctttaaaagttttgtaagattatttatgcaata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  2883685 aggccaacaggaaagtgtagcaactgattatgtactaaaggtattgccaaattgagattttctcattctttaaaagttttgtaagattatttatgcaata 2883784  T
Q  201 cagtcacaaggtatttagagtctatctggatttgacttatattaattaatttactagcataaacacttatgagactgtttggtagagcttatgaaatcaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  2883785 cagtcacaaggtatttagagtctatctggatttgacttatattaattaatttactagcataaacagttatgagactgtttgggagagcttatgaaatcaa 2883884  T
Q  301 ctgttttcagcttcttttcgtaagctctccatgatagctcatcaaatcagtatagcttatataaaaactgtttgactttattttatctgttgttttcgaa 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2883885 ctgttttcagcttcttttcgtaagctctccatgatagctcatcaaatcagtatagcttatataaaaactgtttgactttattttatctgttgttttcgaa 2883984  T
Q  401 atagtgtatacataagcactagtaatatgacaagtacttatgttataagctctcaattaaattgtttatacatggtctaatttacttgaaaattatgtag 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  2883985 atagtgtatacataagcactagtaatatgacaagtacttatgttataagctctcaattaaattatttatacatggtctaatttacttgaaaattatgtag 2884084  T
Q  501 cttttgggattggatgtatgtgctgacactatggtggggaatgaaatgttgcgtggtatttccggaggtcaaagaaagcgagttaccacaggagagatgt 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2884085 cttttgggattggatgtatgtgctgacactatggtggggaatgaaatgttgcgtggtatttccggaggtcaaagaaagcgagttaccacaggagagatgt 2884184  T
Q  601 tggtcggaccagcaaatgc 619  Q
    ||||||| |||||||||||    
T  2884185 tggtcgggccagcaaatgc 2884203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 480 - 620
Target Start/End: Complemental strand, 2900900 - 2900760
Alignment:
Q  480 atttacttgaaaattatgtagcttttgggattggatgtatgtgctgacactatggtggggaatgaaatgttgcgtggtatttccggaggtcaaagaaagc 579  Q
    ||||| |||||||| ||  |||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||| ||||||||||    
T  2900900 atttaattgaaaatcatacagcttttggggttggatgtatgtgctgatactatggtggggaatgaaatgttacgtggtatctccggaggacaaagaaagc 2900801  T
Q  580 gagttaccacaggagagatgttggtcggaccagcaaatgct 620  Q
    |||||||||||||||| |||||||| |||||||||||||||    
T  2900800 gagttaccacaggagaaatgttggttggaccagcaaatgct 2900760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 93 - 221
Target Start/End: Complemental strand, 2901271 - 2901137
Alignment:
Q  93 gcaactggaggccaacaggaaagtgtagcaactgattatgtactaaaggtatt------gccaaattgagattctctcattctttaaaagttttgtaaga 186  Q
    |||||||||||||||||||||||||| | ||| || |||||||||||||||||      ||||||  |||| ||||| |||||||| ||||| | |||||    
T  2901271 gcaactggaggccaacaggaaagtgtggtaacagactatgtactaaaggtattagcacagccaaaacgagactctcttattctttacaagttctttaaga 2901172  T
Q  187 ttatttatgcaatacagtcacaaggtatttagagt 221  Q
    || | |||| | || ||||||||||||||||||||    
T  2901171 ttgtctatgaagtaaagtcacaaggtatttagagt 2901137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 504 - 611
Target Start/End: Original strand, 2874094 - 2874201
Alignment:
Q  504 ttgggattggatgtatgtgctgacactatggtggggaatgaaatgttgcgtggtatttccggaggtcaaagaaagcgagttaccacaggagagatgttgg 603  Q
    ||||| |||||| |||||||||| || ||||| ||  ||||||||   |||||||| ||||| || ||||||||| || ||||||||||||| |||||||    
T  2874094 ttggggttggatatatgtgctgataccatggtaggagatgaaatgcaccgtggtatctccggtggacaaagaaagagacttaccacaggagaaatgttgg 2874193  T
Q  604 tcggacca 611  Q
    | ||||||    
T  2874194 ttggacca 2874201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 258 - 384
Target Start/End: Original strand, 18628506 - 18628643
Alignment:
Q  258 cataaacacttatgagactgtttggtagagcttatgaaatcaac---------tgttttcagcttcttttcgtaagctctccatgatagctcatcaaatc 348  Q
    ||||||||||| ||||||||||||| ||||||||||||| ||||         |||||||||||| ||| | ||||||||||| |||| || || ||| |    
T  18628506 cataaacacttgtgagactgtttgggagagcttatgaaaacaacttatgaagttgttttcagcttatttccataagctctccaagataacttatgaaaac 18628605  T
Q  349 ag--tatagcttatataaaaactgtttgactttatttt 384  Q
    ||  |||| ||||||||||||| |||||||| ||||||    
T  18628606 agtttataacttatataaaaacagtttgactatatttt 18628643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 351 - 420
Target Start/End: Original strand, 54325104 - 54325173
Alignment:
Q  351 tatagcttatataaaaactgtttgactttattttatctgttgttttcgaaatagtgtatacataagcact 420  Q
    |||||||||||| ||||| ||||||||||||||||||| ||||  | |||||||| |||||| |||||||    
T  54325104 tatagcttatatgaaaacagtttgactttattttatcttttgtaatagaaatagtttatacacaagcact 54325173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 351 - 419
Target Start/End: Original strand, 30338659 - 30338727
Alignment:
Q  351 tatagcttatataaaaactgtttgactttattttatctgttgttttcgaaatagtgtatacataagcac 419  Q
    |||||||||||| ||||| |||| |||||||| ||||| ||||| | |||||||| |||||||||||||    
T  30338659 tatagcttatatgaaaacagtttaactttattctatcttttgttatagaaatagtttatacataagcac 30338727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 322 - 420
Target Start/End: Original strand, 7749120 - 7749218
Alignment:
Q  322 aagctctccatgatagctcatcaaatcagtatagcttatataaaaactgtttgactttattttatctgttgttttcgaaatagtgtatacataagcact 420  Q
    |||||||||| ||||||| || |||||||| ||| |||||||||||  ||| || |||||||| ||| || || | ||||||| |||||||||| ||||    
T  7749120 aagctctccaagatagcttatgaaatcagtttagtttatataaaaatagttcgattttattttctcttttattatagaaatagcgtatacataaacact 7749218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 351 - 420
Target Start/End: Original strand, 46013367 - 46013436
Alignment:
Q  351 tatagcttatataaaaactgtttgactttattttatctgttgttttcgaaatagtgtatacataagcact 420  Q
    |||| ||||||||||||| ||||||||||||||||||| |||||   |||||||| || |||||| ||||    
T  46013367 tataacttatataaaaacagtttgactttattttatcttttgttccagaaatagtttacacataaacact 46013436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 333 - 394
Target Start/End: Original strand, 43372016 - 43372079
Alignment:
Q  333 gatagctcatcaaatcagt--atagcttatataaaaactgtttgactttattttatctgttgtt 394  Q
    ||||||| || ||||||||  ||||||||||||||||| |||||||| |||||||||| |||||    
T  43372016 gatagcttatgaaatcagtttatagcttatataaaaacagtttgactgtattttatcttttgtt 43372079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 418
Target Start/End: Complemental strand, 21953276 - 21953209
Alignment:
Q  351 tatagcttatataaaaactgtttgactttattttatctgttgttttcgaaatagtgtatacataagca 418  Q
    |||||||||||||||||  |||||||||||||||  || ||||| | |||||||| ||||||| ||||    
T  21953276 tatagcttatataaaaagagtttgactttattttcccttttgttatagaaatagtttatacatgagca 21953209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 420
Target Start/End: Complemental strand, 46247215 - 46247152
Alignment:
Q  357 ttatataaaaactgtttgactttattttatctgttgttttcgaaatagtgtatacataagcact 420  Q
    |||||||||||| ||||||||||||||||||| |||||   |||||||| || |||||| ||||    
T  46247215 ttatataaaaacagtttgactttattttatcttttgttccagaaatagtttacacataaacact 46247152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 351 - 405
Target Start/End: Complemental strand, 927479 - 927425
Alignment:
Q  351 tatagcttatataaaaactgtttgactttattttatctgttgttttcgaaatagt 405  Q
    |||||||||||| ||||| |||||||||||||| |||| |||| || ||||||||    
T  927479 tatagcttatatgaaaacagtttgactttatttcatcttttgtattagaaatagt 927425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 351 - 417
Target Start/End: Complemental strand, 18630683 - 18630617
Alignment:
Q  351 tatagcttatataaaaactgtttgactttattttatctgttgttttcgaaatagtgtatacataagc 417  Q
    |||||||||||| |||||   ||||||||||||||||| ||||| | |||||||| ||| |||||||    
T  18630683 tatagcttatatgaaaaccaattgactttattttatcttttgttattgaaatagtttatgcataagc 18630617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 420
Target Start/End: Original strand, 21593079 - 21593147
Alignment:
Q  351 tatagcttatataaaaactgtttgactttattttatctgttgttttcgaaatagtgtatacataagcact 420  Q
    |||||||||||| ||||  ||| ||||||||||||||| | ||| | |||||||| ||||||||||||||    
T  21593079 tatagcttatatgaaaatagtt-gactttattttatctttagttatagaaatagtttatacataagcact 21593147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 388
Target Start/End: Original strand, 39931371 - 39931408
Alignment:
Q  351 tatagcttatataaaaactgtttgactttattttatct 388  Q
    ||||||||| ||||||| ||||||||||||||||||||    
T  39931371 tatagcttacataaaaaatgtttgactttattttatct 39931408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 420
Target Start/End: Complemental strand, 41606189 - 41606120
Alignment:
Q  351 tatagcttatataaaaactgtttgactttattttatctgttgttttcgaaatagtgtatacataagcact 420  Q
    |||||||||||||| |||  |||||||||||||||||  ||||| || ||||||| | ||||||| ||||    
T  41606189 tatagcttatataagaaccatttgactttattttatcctttgttatcaaaatagtttttacataaacact 41606120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 356 - 388
Target Start/End: Original strand, 19429560 - 19429592
Alignment:
Q  356 cttatataaaaactgtttgactttattttatct 388  Q
    ||||||||||||| |||||||||||||||||||    
T  19429560 cttatataaaaacagtttgactttattttatct 19429592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 258 - 294
Target Start/End: Complemental strand, 24718782 - 24718746
Alignment:
Q  258 cataaacacttatgagactgtttggtagagcttatga 294  Q
    |||||||||||||||||||||||||| || |||||||    
T  24718782 cataaacacttatgagactgtttggtcgaacttatga 24718746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 7e-29; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 502 - 619
Target Start/End: Complemental strand, 44213575 - 44213458
Alignment:
Q  502 ttttgggattggatgtatgtgctgacactatggtggggaatgaaatgttgcgtggtatttccggaggtcaaagaaagcgagttaccacaggagagatgtt 601  Q
    ||||||| |||||| ||||||| || || ||||| ||| ||||||||||||||||||| |||||||| ||||| ||||| ||||||||||||||||||||    
T  44213575 ttttggggttggatatatgtgcggataccatggtaggggatgaaatgttgcgtggtatctccggaggacaaaggaagcgtgttaccacaggagagatgtt 44213476  T
Q  602 ggtcggaccagcaaatgc 619  Q
    ||| |||||||| |||||    
T  44213475 ggttggaccagccaatgc 44213458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 491 - 619
Target Start/End: Complemental strand, 44225747 - 44225619
Alignment:
Q  491 aattatgtagcttttgggattggatgtatgtgctgacactatggtggggaatgaaatgttgcgtggtatttccggaggtcaaagaaagcgagttaccaca 590  Q
    |||| ||||| ||||||| |||||| |||| || || || ||||||||  |||||||||| |||||||| || ||||| || || ||||| || || |||    
T  44225747 aattttgtagattttggggttggatatatgcgcggataccatggtgggagatgaaatgttacgtggtatctctggaggacagaggaagcgtgtaactaca 44225648  T
Q  591 ggagagatgttggtcggaccagcaaatgc 619  Q
    |||||||||||||| |||||||| |||||    
T  44225647 ggagagatgttggttggaccagccaatgc 44225619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 491 - 619
Target Start/End: Complemental strand, 44236560 - 44236432
Alignment:
Q  491 aattatgtagcttttgggattggatgtatgtgctgacactatggtggggaatgaaatgttgcgtggtatttccggaggtcaaagaaagcgagttaccaca 590  Q
    |||| ||||| ||||||| |||||| |||| || || || ||||||||  |||||||||| |||||||| || ||||| || || ||||| || || |||    
T  44236560 aattttgtagattttggggttggatatatgcgcggataccatggtgggagatgaaatgttacgtggtatctctggaggacagaggaagcgtgtaactaca 44236461  T
Q  591 ggagagatgttggtcggaccagcaaatgc 619  Q
    |||||||||||||| |||||||| |||||    
T  44236460 ggagagatgttggttggaccagccaatgc 44236432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 351 - 420
Target Start/End: Complemental strand, 10143175 - 10143106
Alignment:
Q  351 tatagcttatataaaaactgtttgactttattttatctgttgttttcgaaatagtgtatacataagcact 420  Q
    |||||||||||||||||| ||||||||| ||||||||| ||||| | ||||||   ||||||||||||||    
T  10143175 tatagcttatataaaaacagtttgacttaattttatcttttgttatagaaataacttatacataagcact 10143106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 351 - 418
Target Start/End: Complemental strand, 13866892 - 13866825
Alignment:
Q  351 tatagcttatataaaaactgtttgactttattttatctgttgttttcgaaatagtgtatacataagca 418  Q
    ||||| |||||||||||| ||||||||| ||||||||| ||| | | |||||||| ||||||||||||    
T  13866892 tatagattatataaaaacagtttgacttaattttatcttttgctatagaaatagtttatacataagca 13866825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 351 - 420
Target Start/End: Complemental strand, 37053597 - 37053528
Alignment:
Q  351 tatagcttatataaaaactgtttgactttattttatctgttgttttcgaaatagtgtatacataagcact 420  Q
    |||| ||||||| ||||| ||||||||||||||||| |  |||| | |||||||| ||||||||||||||    
T  37053597 tataacttatatgaaaacagtttgactttattttattttctgttatagaaatagtctatacataagcact 37053528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 315 - 388
Target Start/End: Original strand, 36863654 - 36863729
Alignment:
Q  315 ttttcgtaagctctccatgatagctcatcaaatcagt--atagcttatataaaaactgtttgactttattttatct 388  Q
    ||||| ||||||||||| ||||||| || ||| || |  ||| |||||||||||| ||||||||||||||||||||    
T  36863654 ttttcataagctctccaagatagcttatgaaaacaatttataacttatataaaaattgtttgactttattttatct 36863729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 249 - 292
Target Start/End: Complemental strand, 757575 - 757532
Alignment:
Q  249 atttactagcataaacacttatgagactgtttggtagagcttat 292  Q
    ||||||||||||||| |||||||||||||||||| || ||||||    
T  757575 atttactagcataaatacttatgagactgtttgggagggcttat 757532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 418
Target Start/End: Complemental strand, 5133775 - 5133708
Alignment:
Q  351 tatagcttatataaaaactgtttgactttattttatctgttgttttcgaaatagtgtatacataagca 418  Q
    |||| ||||||||||||| ||||  ||||||||||||| ||||| | |||||||  ||||||||||||    
T  5133775 tatatcttatataaaaacagtttatctttattttatcttttgttatagaaatagcttatacataagca 5133708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 420
Target Start/End: Original strand, 28803575 - 28803642
Alignment:
Q  353 tagcttatataaaaactgtttgactttattttatctgttgttttcgaaatagtgtatacataagcact 420  Q
    |||||||||| ||| | ||||||||||||||||||| ||||| ||||||||   |||| |||||||||    
T  28803575 tagcttatatgaaatcagtttgactttattttatcttttgttatcgaaataacttatatataagcact 28803642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 374 - 420
Target Start/End: Complemental strand, 12215787 - 12215741
Alignment:
Q  374 gactttattttatctgttgttttcgaaatagtgtatacataagcact 420  Q
    ||||||||||||||| ||||| | |||||||| ||||||||||||||    
T  12215787 gactttattttatcttttgttgtagaaatagtttatacataagcact 12215741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 325 - 420
Target Start/End: Original strand, 18962077 - 18962174
Alignment:
Q  325 ctctccatgatagctcatcaaatcagt--atagcttatataaaaactgtttgactttattttatctgttgttttcgaaatagtgtatacataagcact 420  Q
    ||||||||||||||| || |||  |||  ||||||||||| ||||| |||| |||||||||||||| ||||| |  ||||||   |||||||||||||    
T  18962077 ctctccatgatagcttatgaaaatagtttatagcttatatgaaaacagtttaactttattttatcttttgttataaaaatagctaatacataagcact 18962174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 326 - 469
Target Start/End: Complemental strand, 42974378 - 42974240
Alignment:
Q  326 tctccatgatagctcatcaaatcagtatagcttatataaaaactgtttgactttattttatctgttgttttcgaaatagtgtatacataagcactagtaa 425  Q
    ||||||||||||||||| ||| |||| ||  | | || |||| ||||||||||||| | | || ||||| | |||||||| |||||| ||||||   |||    
T  42974378 tctccatgatagctcatgaaaacagttta--taacatgaaaattgtttgactttatatgaccttttgttatagaaatagtttatacacaagcac---taa 42974284  T
Q  426 tatgacaagtacttatgttataagctctcaattaaattgtttat 469  Q
    ||||| ||||  ||||| |||||||||| |||||| ||| ||||    
T  42974283 tatgataagtgtttatgctataagctcttaattaagttgcttat 42974240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 388
Target Start/End: Original strand, 7103550 - 7103587
Alignment:
Q  351 tatagcttatataaaaactgtttgactttattttatct 388  Q
    |||||||||||| ||||| |||||||||||||||||||    
T  7103550 tatagcttatattaaaacagtttgactttattttatct 7103587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 394
Target Start/End: Complemental strand, 11513950 - 11513858
Alignment:
Q  304 ttttcagcttcttttcgtaagctctccatgatagctcatcaaatcag--tatagcttatataaaaactgtttgactttattttatctgttgtt 394  Q
    |||||||||| ||| |  ||| |||||||||||||| || ||| ||   |||||||||||| |||||  |||||||||||||||||| |||||    
T  11513950 ttttcagcttatttccaaaagttctccatgatagcttatgaaaacaacttatagcttatatgaaaacaatttgactttattttatcttttgtt 11513858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 420
Target Start/End: Complemental strand, 33192196 - 33192127
Alignment:
Q  351 tatagcttatataaaaactgtttgactttattttatctgttgttttcgaaatagtgtatacataagcact 420  Q
    |||| ||||||| ||||| |||||||||||||||||||  |||| | |||||||| | || |||||||||    
T  33192196 tataacttatatgaaaacagtttgactttattttatcttatgttatagaaatagtttttatataagcact 33192127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 302
Target Start/End: Original strand, 41905840 - 41905913
Alignment:
Q  229 gatttgacttatattaattaatttactagcataaacacttatgagactgtttggtagagcttatgaaatcaact 302  Q
    |||||||||||| | || | ||||| | |||||||||||||||||||| || |  ||||||||||||| |||||    
T  41905840 gatttgacttatttgaacttatttatttgcataaacacttatgagactcttcgagagagcttatgaaaacaact 41905913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 352 - 404
Target Start/End: Complemental strand, 14209279 - 14209227
Alignment:
Q  352 atagcttatataaaaactgtttgactttattttatctgttgttttcgaaatag 404  Q
    ||||||||||| ||||| |||||| |||||||||||| ||||| | |||||||    
T  14209279 atagcttatatgaaaacagtttgaatttattttatcttttgttattgaaatag 14209227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 353 - 417
Target Start/End: Original strand, 17952770 - 17952834
Alignment:
Q  353 tagcttatataaaaactgtttgactttattttatctgttgttttcgaaatagtgtatacataagc 417  Q
    |||||||||| ||||  ||||||||||||||||||| ||||| | |||||||  |||| ||||||    
T  17952770 tagcttatatgaaaatagtttgactttattttatcttttgttatagaaatagcttatatataagc 17952834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 302 - 387
Target Start/End: Original strand, 36415689 - 36415776
Alignment:
Q  302 tgttttcagcttcttttcgtaagctctccatgatagctcatcaaatcag--tatagcttatataaaaactgtttgactttattttatc 387  Q
    |||||||| ||| |||||||||| ||| |||||||||| || ||| |||  |||||| |  || |||| |||||||||||||||||||    
T  36415689 tgttttcatcttattttcgtaagttctacatgatagcttatgaaaacagcttatagcatcaatgaaaaatgtttgactttattttatc 36415776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 6e-17; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 301 - 415
Target Start/End: Original strand, 28586781 - 28586897
Alignment:
Q  301 ctgttttcagcttcttttcgtaagctctccatgatagctcatcaaatcag--tatagcttatataaaaactgtttgactttattttatctgttgttttcg 398  Q
    ||||||||||||| |||   ||||||||| | |||||||| ||||| |||  ||||  |||||| ||||| ||||||||||||||||||| ||||| | |    
T  28586781 ctgttttcagcttatttcgataagctctctaggatagctcgtcaaaacagcttataatttatatgaaaacagtttgactttattttatcttttgttatag 28586880  T
Q  399 aaatagtgtatacataa 415  Q
    |||||||||||||||||    
T  28586881 aaatagtgtatacataa 28586897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 418
Target Start/End: Original strand, 37063146 - 37063208
Alignment:
Q  356 cttatataaaaactgtttgactttattttatctgttgttttcgaaatagtgtatacataagca 418  Q
    ||||||| ||||  ||||||||||||||||||| ||||| | |||||||| ||||||||||||    
T  37063146 cttatatgaaaatagtttgactttattttatcttttgttatagaaatagtttatacataagca 37063208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 351 - 404
Target Start/End: Complemental strand, 14295509 - 14295456
Alignment:
Q  351 tatagcttatataaaaactgtttgactttattttatctgttgttttcgaaatag 404  Q
    |||||||||||| ||||| ||||||||||||||||||| ||||| | |||||||    
T  14295509 tatagcttatatgaaaacagtttgactttattttatcttttgttatagaaatag 14295456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 351 - 420
Target Start/End: Complemental strand, 19177482 - 19177413
Alignment:
Q  351 tatagcttatataaaaactgtttgactttattttatctgttgttttcgaaatagtgtatacataagcact 420  Q
    |||||||||||| ||||| ||| ||||| |||||||||  |||| | |||||||| ||||||||||||||    
T  19177482 tatagcttatatgaaaacagttagacttaattttatcttctgttgtagaaatagtttatacataagcact 19177413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 258 - 301
Target Start/End: Complemental strand, 7907999 - 7907956
Alignment:
Q  258 cataaacacttatgagactgtttggtagagcttatgaaatcaac 301  Q
    ||||||||||||||||||||||||| ||| ||||||||| ||||    
T  7907999 cataaacacttatgagactgtttggaagaacttatgaaaacaac 7907956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 302
Target Start/End: Original strand, 13244505 - 13244548
Alignment:
Q  259 ataaacacttatgagactgtttggtagagcttatgaaatcaact 302  Q
    |||||||||||||| ||||||||| ||||||||||||| |||||    
T  13244505 ataaacacttatgacactgtttggaagagcttatgaaaacaact 13244548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 418
Target Start/End: Complemental strand, 16889738 - 16889671
Alignment:
Q  351 tatagcttatataaaaactgtttgactttattttatctgttgttttcgaaatagtgtatacataagca 418  Q
    |||||||| ||||||||| ||||||||| | ||||||| ||||| | |||||||  ||||||||||||    
T  16889738 tatagcttctataaaaacagtttgacttaagtttatcttttgttatggaaatagcttatacataagca 16889671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 370 - 420
Target Start/End: Original strand, 7096213 - 7096263
Alignment:
Q  370 gtttgactttattttatctgttgttttcgaaatagtgtatacataagcact 420  Q
    ||||||||||||||||||| ||||| | |||||||  ||||||||||||||    
T  7096213 gtttgactttattttatcttttgttatagaaatagcttatacataagcact 7096263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 248 - 302
Target Start/End: Complemental strand, 10907505 - 10907451
Alignment:
Q  248 aatttactagcataaacacttatgagactgtttggtagagcttatgaaatcaact 302  Q
    |||||| | |||| ||||||| ||||||||||||| ||||||||||||| |||||    
T  10907505 aatttattggcatgaacacttgtgagactgtttggaagagcttatgaaaacaact 10907451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 357 - 469
Target Start/End: Original strand, 20982208 - 20982317
Alignment:
Q  357 ttatataaaaactgtttgactttattttatctgttgttttcgaaatagtgtatacataagcactagtaatatgacaagtacttatgttataagctctcaa 456  Q
    |||||| ||||| | ||||||||||||||||  ||||| | |||||||  |||||||||||||   | |||||| ||| ||||||| ||||||| || ||    
T  20982208 ttatatgaaaacgggttgactttattttatcctttgttatagaaatagcttatacataagcac---ttatatgataagcacttatgctataagcacttaa 20982304  T
Q  457 ttaaattgtttat 469  Q
    | || ||||||||    
T  20982305 tgaagttgtttat 20982317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 469
Target Start/End: Complemental strand, 26516275 - 26516186
Alignment:
Q  377 tttattttatctgttgttttcgaaatagtgtatacataagcactagtaatatgacaagtacttatgttataagctctcaattaaattgtttat 469  Q
    |||||||||||| ||||||| |||||||  |||||||||||||   | |||||| |||  |||||| ||||||| || |||||| ||||||||    
T  26516275 tttattttatcttttgttttagaaatagcttatacataagcac---ttatatgataagcgcttatgctataagcgcttaattaagttgtttat 26516186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 388
Target Start/End: Original strand, 583840 - 583877
Alignment:
Q  351 tatagcttatataaaaactgtttgactttattttatct 388  Q
    |||||||||||| ||||| |||||||||||||||||||    
T  583840 tatagcttatatgaaaacagtttgactttattttatct 583877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 388
Target Start/End: Original strand, 32059656 - 32059693
Alignment:
Q  351 tatagcttatataaaaactgtttgactttattttatct 388  Q
    |||||||||||| ||||| |||||||||||||||||||    
T  32059656 tatagcttatatgaaaacagtttgactttattttatct 32059693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 420
Target Start/End: Original strand, 35135729 - 35135798
Alignment:
Q  351 tatagcttatataaaaactgtttgactttattttatctgttgttttcgaaatagtgtatacataagcact 420  Q
    |||||||||||| ||||  ||||||||||||||||||| ||||| | ||||||   ||||||||| ||||    
T  35135729 tatagcttatatgaaaatagtttgactttattttatcttttgttatagaaatatcttatacataaacact 35135798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 347 - 403
Target Start/End: Original strand, 29116993 - 29117049
Alignment:
Q  347 tcagtatagcttatataaaaactgtttgactttattttatctgttgttttcgaaata 403  Q
    |||| ||||||||||  ||||| ||||||||||||||||||| ||||| | ||||||    
T  29116993 tcaggatagcttatacgaaaacagtttgactttattttatcttttgttatagaaata 29117049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 304 - 417
Target Start/End: Complemental strand, 32172705 - 32172590
Alignment:
Q  304 ttttcagcttcttttcgtaagctctccatgatagctcatcaaatcag--tatagcttatataaaaactgtttgactttattttatctgttgttttcgaaa 401  Q
    |||||||||| ||| | | || ||| |||||||||| || ||| |||  ||||||||||||  ||||   ||||||| ||||||||| ||||| | ||||    
T  32172705 ttttcagcttatttccattagttcttcatgatagcttatgaaaacagcttatagcttatatgtaaacaacttgacttcattttatcttttgttgtagaaa 32172606  T
Q  402 tagtgtatacataagc 417  Q
    |||| |||||||||||    
T  32172605 tagtttatacataagc 32172590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 352 - 420
Target Start/End: Complemental strand, 20181 - 20113
Alignment:
Q  352 atagcttatataaaaactgtttgactttattttatctgttgttttcgaaatagtgtatacataagcact 420  Q
    ||||||||||| | ||||||||||||||||||||||| | ||| | |||||||| ||||||||||||||    
T  20181 atagcttatatgataactgtttgactttattttatctttggttatagaaatagtatatacataagcact 20113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 252 - 302
Target Start/End: Original strand, 7918728 - 7918778
Alignment:
Q  252 tactagcataaacacttatgagactgtttggtagagcttatgaaatcaact 302  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||| |||||    
T  7918728 tactagcataaacacttgtgagactgtttgggagagcttatgaaaacaact 7918778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 371 - 469
Target Start/End: Complemental strand, 14482185 - 14482090
Alignment:
Q  371 tttgactttattttatctgttgttttcgaaatagtgtatacataagcactagtaatatgacaagtacttatgttataagctctcaattaaattgtttat 469  Q
    |||||||||||||||||| ||||| | |||||||| |||||||||||||   | |||||| ||| ||| ||| ||||||  || |||||||||||||||    
T  14482185 tttgactttattttatcttttgttatagaaatagtttatacataagcac---ttatatgataagcactaatgctataagaacttaattaaattgtttat 14482090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 252 - 294
Target Start/End: Complemental strand, 1664492 - 1664450
Alignment:
Q  252 tactagcataaacacttatgagactgtttggtagagcttatga 294  Q
    ||||||||||||||||| ||||||||||||| |||||||||||    
T  1664492 tactagcataaacacttgtgagactgtttgggagagcttatga 1664450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 302 - 420
Target Start/End: Original strand, 38036128 - 38036248
Alignment:
Q  302 tgttttcagcttcttttcgtaagctctccatgatagctcatcaaatcag--tatagcttatataaaaactgtttgactttattttatctgttgttttcga 399  Q
    |||||||||||| |||   ||||||||||| ||||||| |||||| |||  ||||||||| | ||||||  ||||| |||||||||| | |||||    |    
T  38036128 tgttttcagcttatttcaataagctctccaagatagctaatcaaaacagtttatagcttacacaaaaacaatttgaatttattttattttttgttaaata 38036227  T
Q  400 aatagtgtatacataagcact 420  Q
    |||||| ||||||||||||||    
T  38036228 aatagtttatacataagcact 38036248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 301 - 382
Target Start/End: Complemental strand, 11795147 - 11795064
Alignment:
Q  301 ctgttttcagcttcttttcgtaagctctccatgatagctcatcaaatcag--tatagcttatataaaaactgtttgactttatt 382  Q
    ||||||||||||| ||| | |||||||||||| |||||| || |||||||  |||| ||||||| ||||| || ||||||||||    
T  11795147 ctgttttcagcttatttccataagctctccataatagcttatgaaatcagcttataacttatatgaaaacagtgtgactttatt 11795064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 321 - 388
Target Start/End: Original strand, 6509338 - 6509407
Alignment:
Q  321 taagctctccatgatagctcatcaaatcag--tatagcttatataaaaactgtttgactttattttatct 388  Q
    ||||||||||| ||||||| || ||| |||  ||||||||||||||| ||  ||||||||||||||||||    
T  6509338 taagctctccaggatagcttatgaaaacagcttatagcttatataaatacaatttgactttattttatct 6509407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 301 - 404
Target Start/End: Complemental strand, 11183600 - 11183495
Alignment:
Q  301 ctgttttcagcttcttttcgtaagctctccatgatagctcatcaaatcag--tatagcttatataaaaactgtttgactttattttatctgttgttttcg 398  Q
    ||||||||||||| ||| | ||||||||||| | |||||  | ||| |||  ||||||| |||| |  || |||||||||| |||||||||||||||| |    
T  11183600 ctgttttcagcttatttccataagctctccagggtagcttgtgaaaacagcttatagctaatatgaggacagtttgactttgttttatctgttgttttag 11183501  T
Q  399 aaatag 404  Q
    ||||||    
T  11183500 aaatag 11183495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 420
Target Start/End: Complemental strand, 34770895 - 34770826
Alignment:
Q  351 tatagcttatataaaaactgtttgactttattttatctgttgttttcgaaatagtgtatacataagcact 420  Q
    ||||||||| || |||||  |||||||||||||||||| ||||  | |||||||| | ||||||||||||    
T  34770895 tatagcttaaatgaaaacaatttgactttattttatcttttgtaatggaaatagtttttacataagcact 34770826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 420
Target Start/End: Original strand, 35298490 - 35298614
Alignment:
Q  299 aactgttttcagcttcttttcgtaagctctccatgatagctcatcaaatcag--tatagcttatata-aaaactgtttgactttattttatctgttgttt 395  Q
    |||| |||||||||| |||  ||| |||| ||||||||||| || ||| ||   ||||| ||||||  ||||||||||| ||||||||||||| |||||     
T  35298490 aactattttcagcttatttatgtaggctcaccatgatagcttatgaaaacaacttatagtttatattgaaaactgtttggctttattttatcttttgtta 35298589  T
Q  396 tcgaaatagtgtatacataagcact 420  Q
      |||||||  ||||||||||||||    
T  35298590 ctgaaatagcttatacataagcact 35298614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 351 - 403
Target Start/End: Complemental strand, 4763921 - 4763869
Alignment:
Q  351 tatagcttatataaaaactgtttgactttattttatctgttgttttcgaaata 403  Q
    |||||||||| | ||||| |||||| |||||||||||| ||||| ||||||||    
T  4763921 tatagcttatgtgaaaacggtttgaatttattttatcttttgttgtcgaaata 4763869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 252 - 300
Target Start/End: Complemental strand, 9700124 - 9700076
Alignment:
Q  252 tactagcataaacacttatgagactgtttggtagagcttatgaaatcaa 300  Q
    ||||||||||||||||| ||||||| ||||  ||||||| |||||||||    
T  9700124 tactagcataaacacttgtgagactatttgagagagcttgtgaaatcaa 9700076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 370 - 414
Target Start/End: Original strand, 39392747 - 39392791
Alignment:
Q  370 gtttgactttattttatctgttgttttcgaaatagtgtatacata 414  Q
    ||||||||||||||||||| ||||| | |||||||| ||||||||    
T  39392747 gtttgactttattttatcttttgttatagaaatagtttatacata 39392791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 302 - 420
Target Start/End: Original strand, 32386579 - 32386699
Alignment:
Q  302 tgttttcagcttcttttcgtaagctctccatgatagctcatcaaatca--gtatagcttatataaaaactgtttgactttattttatctgttgttttcga 399  Q
    |||||||||||| ||||| ||||||||||| |||| || || ||| ||  ||||| ||||||| |||||  |||||| ||||||||||| || ||   ||    
T  32386579 tgttttcagcttattttcataagctctccaggataactaatgaaaacaacgtataccttatatgaaaacaatttgaccttattttatcttttcttagtga 32386678  T
Q  400 aatagtgtatacataagcact 420  Q
    |||||| ||||||||||||||    
T  32386679 aatagtctatacataagcact 32386699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 351 - 420
Target Start/End: Complemental strand, 5550135 - 5550066
Alignment:
Q  351 tatagcttatataaaaactgtttgactttattttatctgttgttttcgaaatagtgtatacataagcact 420  Q
    |||||||||||| |||||  ||||||||||| |||||| || || |||||||| | ||||||||||||||    
T  5550135 tatagcttatatgaaaacaatttgactttatgttatctcttattatcgaaatactatatacataagcact 5550066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 372 - 420
Target Start/End: Complemental strand, 2456933 - 2456886
Alignment:
Q  372 ttgactttattttatctgttgttttcgaaatagtgtatacataagcact 420  Q
    ||||||||||||||||| ||||| |||||||||| ||||||||||||||    
T  2456933 ttgactttattttatct-ttgttatcgaaatagtttatacataagcact 2456886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 418
Target Start/End: Original strand, 29274296 - 29274363
Alignment:
Q  351 tatagcttatataaaaactgtttgactttattttatctgttgttttcgaaatagtgtatacataagca 418  Q
    |||||||||||| |||||  |||||||||||||||||| ||| | | |||||||  ||||||||||||    
T  29274296 tatagcttatatgaaaacaatttgactttattttatcttttgctatagaaatagcttatacataagca 29274363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 252 - 302
Target Start/End: Complemental strand, 32917320 - 32917270
Alignment:
Q  252 tactagcataaacacttatgagactgtttggtagagcttatgaaatcaact 302  Q
    |||||| |||||||||| ||||||||||||| |||||||||| || |||||    
T  32917320 tactagaataaacacttgtgagactgtttgggagagcttatggaaacaact 32917270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 421
Target Start/End: Complemental strand, 507222 - 507153
Alignment:
Q  352 atagcttatataaaaactgtttgactttattttatctgttgttttcgaaatagtgtatacataagcacta 421  Q
    |||||||||| ||||||  | | |||||||||||||| ||||| | |||||| | |||||||||||||||    
T  507222 atagcttatacaaaaacaatctaactttattttatcttttgttatagaaataatttatacataagcacta 507153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 420
Target Start/End: Complemental strand, 2514705 - 2514636
Alignment:
Q  351 tatagcttatataaaaactgtttgactttattttatctgttgttttcgaaatagtgtatacataagcact 420  Q
    ||||||| ||||||||   ||||||||||||||||||| || || | |||||||  ||||||||||||||    
T  2514705 tatagctcatataaaattagtttgactttattttatcttttattatagaaatagcttatacataagcact 2514636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 420
Target Start/End: Complemental strand, 4006717 - 4006648
Alignment:
Q  351 tatagcttatataaaaactgtttgactttattttatctgttgttttcgaaatagtgtatacataagcact 420  Q
    ||||||||||||||||||  |||||||||||||||||  ||||| | ||||||   ||| ||||||||||    
T  4006717 tatagcttatataaaaacaatttgactttattttatcatttgttatagaaatatcttatgcataagcact 4006648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 420
Target Start/End: Original strand, 10452427 - 10452496
Alignment:
Q  351 tatagcttatataaaaactgtttgactttattttatctgttgttttcgaaatagtgtatacataagcact 420  Q
    |||||||||||| ||||  |||||| |||||||||| | ||||| | |||||||  ||||||||||||||    
T  10452427 tatagcttatatgaaaatagtttgattttattttatattttgttatagaaatagcttatacataagcact 10452496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 420
Target Start/End: Complemental strand, 24774749 - 24774692
Alignment:
Q  363 aaaaactgtttgactttattttatctgttgttttcgaaatagtgtatacataagcact 420  Q
    |||||| ||||||||||||||||| | ||||| | |||||||| |||| |||||||||    
T  24774749 aaaaacagtttgactttattttatattttgttatagaaatagtttatatataagcact 24774692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 302
Target Start/End: Complemental strand, 30863364 - 30863319
Alignment:
Q  257 gcataaacacttatgagactgtttggtagagcttatgaaatcaact 302  Q
    |||||||||||| | ||||| ||||||||||||||||||| |||||    
T  30863364 gcataaacacttgttagactctttggtagagcttatgaaaacaact 30863319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 302
Target Start/End: Complemental strand, 33498733 - 33498692
Alignment:
Q  261 aaacacttatgagactgtttggtagagcttatgaaatcaact 302  Q
    |||||||| ||||||| ||||||||||||||||||| |||||    
T  33498733 aaacacttctgagactttttggtagagcttatgaaaacaact 33498692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 351 - 387
Target Start/End: Complemental strand, 9326959 - 9326923
Alignment:
Q  351 tatagcttatataaaaactgtttgactttattttatc 387  Q
    |||||||||||||||||| ||||||||||||| ||||    
T  9326959 tatagcttatataaaaacagtttgactttattatatc 9326923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 351 - 420
Target Start/End: Original strand, 20192673 - 20192742
Alignment:
Q  351 tatagcttatataaaaactgtttgactttattttatctgttgttttcgaaatagtgtatacataagcact 420  Q
    ||||| |||||| ||||||||||||||||||||||||| ||||| |  ||||||  ||||||||||||||    
T  20192673 tatagattatatgaaaactgtttgactttattttatcttttgttatataaatagcttatacataagcact 20192742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 299 - 404
Target Start/End: Original strand, 24887296 - 24887403
Alignment:
Q  299 aactgttttcagcttcttttcgtaagctctccatgatagctcatcaaatcag--tatagcttatataaaaactgtttgactttattttatctgttgtttt 396  Q
    ||||||||||||||| ||  | ||||||||||| ||||||| || ||| |||  | |||||||||| || || ||||||||||||||||||| ||||| |    
T  24887296 aactgttttcagcttattcccataagctctccaggatagcttatgaaaacagcttttagcttatatgaatacagtttgactttattttatctattgttat 24887395  T
Q  397 cgaaatag 404  Q
     |||||||    
T  24887396 agaaatag 24887403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 420
Target Start/End: Complemental strand, 27792872 - 27792806
Alignment:
Q  354 agcttatataaaaactgtttgactttattttatctgttgttttcgaaatagtgtatacataagcact 420  Q
    ||||||||| ||||  ||||||| ||||||||||| ||||||| |||||||  ||||||||||||||    
T  27792872 agcttatatgaaaatagtttgaccttattttatcttttgtttttgaaatagcttatacataagcact 27792806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 302 - 388
Target Start/End: Complemental strand, 23785309 - 23785221
Alignment:
Q  302 tgttttcagcttcttttcgtaagctctccatgatagctcatcaaatcagt--atagcttatataaaaactgtttgactttattttatct 388  Q
    |||||||||||| ||| | |||||||||||||| ||||  | ||| ||||  ||||||||||| || || |||||||||||||||||||    
T  23785309 tgttttcagcttgtttccataagctctccatgagagcttgtgaaaacagtttatagcttatatgaatacagtttgactttattttatct 23785221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 351 - 396
Target Start/End: Original strand, 31337468 - 31337513
Alignment:
Q  351 tatagcttatataaaaactgtttgactttattttatctgttgtttt 396  Q
    |||| ||||||||||||| ||||||||||||||||||| |||||||    
T  31337468 tataacttatataaaaacagtttgactttattttatcttttgtttt 31337513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 352 - 404
Target Start/End: Original strand, 49586984 - 49587036
Alignment:
Q  352 atagcttatataaaaactgtttgactttattttatctgttgttttcgaaatag 404  Q
    ||||||||||| ||||| ||||||||||||||||||| ||||| | |||||||    
T  49586984 atagcttatatgaaaacagtttgactttattttatcttttgttatagaaatag 49587036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 405
Target Start/End: Complemental strand, 34954137 - 34954032
Alignment:
Q  301 ctgttttcagcttcttttcgtaagctctccatgatagctcatcaaatcagtat--agcttatataaaaactgtttgactttattttatctgttgttttcg 398  Q
    ||||||||||||| ||||| |||||| |||||||||| | || ||| ||||||  || |||||| ||||| | |||||||||||||||||  |||| | |    
T  34954137 ctgttttcagcttattttcataagctatccatgataggttat-aaaacagtatacagattatatgaaaacagcttgactttattttatcttgtgttatag 34954039  T
Q  399 aaatagt 405  Q
    |||||||    
T  34954038 aaatagt 34954032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 301 - 388
Target Start/End: Complemental strand, 1816638 - 1816549
Alignment:
Q  301 ctgttttcagcttcttttcgtaagctctccatgatagctcatcaaatcag--tatagcttatataaaaactgtttgactttattttatct 388  Q
    ||||||||||||| ||||  |||||||||||  |||||| || ||| ||   |||| |||||| |||||| |||||||||||||||||||    
T  1816638 ctgttttcagcttattttgataagctctccagtatagcttatgaaaacaacttatatcttatacaaaaacagtttgactttattttatct 1816549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 252 - 294
Target Start/End: Complemental strand, 45590774 - 45590732
Alignment:
Q  252 tactagcataaacacttatgagactgtttggtagagcttatga 294  Q
    ||||||||||| ||||| ||||||||||||| |||||||||||    
T  45590774 tactagcataagcacttgtgagactgtttgggagagcttatga 45590732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 416
Target Start/End: Original strand, 40122820 - 40122884
Alignment:
Q  351 tatagcttatataaaaactgtttgactttattttatctgttgttttcgaaatagtgtatacataag 416  Q
    |||||||| ||| ||||| ||||||||||||||||||| ||||| | |||||||  ||||||||||    
T  40122820 tatagctt-tatgaaaacagtttgactttattttatcttttgttattgaaatagcttatacataag 40122884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 352 - 420
Target Start/End: Complemental strand, 1395673 - 1395605
Alignment:
Q  352 atagcttatataaaaactgtttgactttattttatctgttgttttcgaaatagtgtatacataagcact 420  Q
    ||||||||||| ||||   |||||||||||||||||| ||||| | |||||||  |||||||| |||||    
T  1395673 atagcttatatgaaaataatttgactttattttatcttttgttatagaaatagcttatacatatgcact 1395605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 299 - 388
Target Start/End: Complemental strand, 2201185 - 2201094
Alignment:
Q  299 aactgttttcagcttcttttcgtaagctctccatgatagctcatcaaatcag--tatagcttatataaaaactgtttgactttattttatct 388  Q
    |||| |||||||||| ||| | ||| || |||| ||||||| || ||| |||  |||||||||||| ||||| |||||||||| ||||||||    
T  2201185 aactcttttcagcttttttccttaaactatccaagatagctaatgaaaacagcttatagcttatatgaaaacagtttgactttgttttatct 2201094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 352 - 420
Target Start/End: Original strand, 41028919 - 41028987
Alignment:
Q  352 atagcttatataaaaactgtttgactttattttatctgttgttttcgaaatagtgtatacataagcact 420  Q
    ||||||||| | ||||| | ||||||||||||| ||| ||||| | |||||||  ||||||||||||||    
T  41028919 atagcttatttgaaaacagattgactttattttttcttttgttatagaaatagcttatacataagcact 41028987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 356 - 420
Target Start/End: Complemental strand, 7243642 - 7243578
Alignment:
Q  356 cttatataaaaactgtttgactttattttatctgttgttttcgaaatagtgtatacataagcact 420  Q
    ||||||||||||||||||||| ||||||||||| ||||| |  |||||||||| ||| |||||||    
T  7243642 cttatataaaaactgtttgacgttattttatcttttgttataaaaatagtgtaaacacaagcact 7243578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 301 - 420
Target Start/End: Complemental strand, 28165146 - 28165025
Alignment:
Q  301 ctgttttcagcttcttttcgtaagctctccatgatagctcatcaaatcagt--atagcttatataaaaactgtttgactttattttatctgttgttttcg 398  Q
    ||||||||| ||| ||| | ||||||||||||||||||| || ||  ||||  ||||||||||| |||||  |||||||| ||||||||| ||||| | |    
T  28165146 ctgttttcaacttatttccataagctctccatgatagcttataaagacagtttatagcttatattaaaacaatttgacttcattttatcttttgttatag 28165047  T
Q  399 aaatagtgtatacataagcact 420  Q
    ||| |   ||||||||||||||    
T  28165046 aaagaacttatacataagcact 28165025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 351 - 420
Target Start/End: Complemental strand, 31002764 - 31002695
Alignment:
Q  351 tatagcttatataaaaactgtttgactttattttatctgttgttttcgaaatagtgtatacataagcact 420  Q
    |||||||||||| ||||   |||||||||||||||||| ||||  | |||||||| ||||||||||||||    
T  31002764 tatagcttatatgaaaatattttgactttattttatcttttgtggttgaaatagtttatacataagcact 31002695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 417
Target Start/End: Complemental strand, 2176893 - 2176846
Alignment:
Q  370 gtttgactttattttatctgttgttttcgaaatagtgtatacataagc 417  Q
    ||||||||||||||||||| |||||   ||||||||||||||||||||    
T  2176893 gtttgactttattttatcttttgttactgaaatagtgtatacataagc 2176846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 351 - 420
Target Start/End: Complemental strand, 5373228 - 5373159
Alignment:
Q  351 tatagcttatataaaaactgtttg-actttattttatctgttgttttcgaaatagtgtatacataagcact 420  Q
    |||| |||||||||||| |||||| |||||||||||||| ||||| | |||||||  ||||||||||||||    
T  5373228 tataacttatataaaaa-tgtttggactttattttatcttttgttatagaaatagcatatacataagcact 5373159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 252 - 302
Target Start/End: Complemental strand, 23214978 - 23214928
Alignment:
Q  252 tactagcataaacacttatgagactgtttggtagagcttatgaaatcaact 302  Q
    ||||||||||||||||||||||||||||||  |||  |||||||| |||||    
T  23214978 tactagcataaacacttatgagactgtttgagagaatttatgaaaacaact 23214928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 356 - 418
Target Start/End: Complemental strand, 31341192 - 31341130
Alignment:
Q  356 cttatataaaaactgtttgactttattttatctgttgttttcgaaatagtgtatacataagca 418  Q
    ||||||||||| | ||||||||||||||||||| ||||| |  ||||||  ||||||||||||    
T  31341192 cttatataaaaccagtttgactttattttatcttttgttatacaaatagcttatacataagca 31341130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 354 - 420
Target Start/End: Complemental strand, 33894622 - 33894557
Alignment:
Q  354 agcttatataaaaactgtttgactttattttatctgttgttttcgaaatagtgtatacataagcact 420  Q
    ||||||||| ||||| ||||||||| ||||||||| ||||| | |||||||  ||||||||||||||    
T  33894622 agcttatatgaaaacagtttgactt-attttatcttttgttatagaaatagcttatacataagcact 33894557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 420
Target Start/End: Original strand, 3610807 - 3610876
Alignment:
Q  351 tatagcttatataaaaactgtttgactttattttatctgttgttttcgaaatagtgtatacataagcact 420  Q
    |||||||||||  ||||| ||||| ||| ||||||||| ||||| | |||||||  ||||||||||||||    
T  3610807 tatagcttataccaaaacagtttgccttcattttatcttttgttgtagaaatagcttatacataagcact 3610876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 420
Target Start/End: Original strand, 9527157 - 9527226
Alignment:
Q  351 tatagcttatataaaaactgtttgactttattttatctgttgttttcgaaatagtgtatacataagcact 420  Q
    ||||| |||||| ||||| ||||||||||||| ||||| ||||| | || |||| ||||| |||||||||    
T  9527157 tatagtttatatgaaaacagtttgactttattatatcttttgttatagatatagcgtatatataagcact 9527226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 302
Target Start/End: Original strand, 22387840 - 22387893
Alignment:
Q  249 atttactagcataaacacttatgagactgtttggtagagcttatgaaatcaact 302  Q
    |||||||  ||||||||| | ||||||||||||| ||||||||||||| |||||    
T  22387840 atttactgacataaacacgtgtgagactgtttgggagagcttatgaaaacaact 22387893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 404
Target Start/End: Original strand, 30456517 - 30456570
Alignment:
Q  351 tatagcttatataaaaactgtttgactttattttatctgttgttttcgaaatag 404  Q
    |||| ||||||| |||||  |||||||||||||||||| ||||||| |||||||    
T  30456517 tataacttatatgaaaacaatttgactttattttatcttttgttttagaaatag 30456570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 388
Target Start/End: Complemental strand, 31338511 - 31338474
Alignment:
Q  351 tatagcttatataaaaactgtttgactttattttatct 388  Q
    |||| ||||||||||||| |||||||||||||||||||    
T  31338511 tataacttatataaaaacagtttgactttattttatct 31338474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 355 - 415
Target Start/End: Complemental strand, 1417263 - 1417203
Alignment:
Q  355 gcttatataaaaactgtttgactttattttatctgttgttttcgaaatagtgtatacataa 415  Q
    |||||||| |||||  |||||||||||||||||| ||||| |  ||||||| |||||||||    
T  1417263 gcttatatgaaaacaatttgactttattttatcttttgttatataaatagtttatacataa 1417203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 247 - 291
Target Start/End: Complemental strand, 5288239 - 5288195
Alignment:
Q  247 taatttactagcataaacacttatgagactgtttggtagagctta 291  Q
    |||| ||||||||||| ||||||||||||||||||| ||| ||||    
T  5288239 taatctactagcataagcacttatgagactgtttgggagaactta 5288195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 352 - 420
Target Start/End: Complemental strand, 24975906 - 24975838
Alignment:
Q  352 atagcttatataaaaactgtttgactttattttatctgttgttttcgaaatagtgtatacataagcact 420  Q
    ||||||||||||||||| ||| | ||||||||||||| ||||| | ||| |||  ||||||| ||||||    
T  24975906 atagcttatataaaaacagttcgcctttattttatcttttgttatagaagtagattatacatcagcact 24975838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 505 - 577
Target Start/End: Complemental strand, 39592165 - 39592093
Alignment:
Q  505 tgggattggatgtatgtgctgacactatggtggggaatgaaatgttgcgtggtatttccggaggtcaaagaaa 577  Q
    ||||||||||  ||||||| || ||| ||||||| |||||||||||  | |||||||| ||||| ||||||||    
T  39592165 tgggattggagatatgtgcagatactgtggtgggaaatgaaatgttaagaggtatttctggaggacaaagaaa 39592093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 356 - 388
Target Start/End: Complemental strand, 46531531 - 46531499
Alignment:
Q  356 cttatataaaaactgtttgactttattttatct 388  Q
    ||||||||||||| |||||||||||||||||||    
T  46531531 cttatataaaaacagtttgactttattttatct 46531499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 351 - 415
Target Start/End: Complemental strand, 49060543 - 49060479
Alignment:
Q  351 tatagcttatataaaaactgtttgactttattttatctgttgttttcgaaatagtgtatacataa 415  Q
    |||||||||||||||||   |||||||||||||||| | ||||| | |||||||  |||||||||    
T  49060543 tatagcttatataaaaataatttgactttattttattttttgttatagaaatagcttatacataa 49060479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 252 - 294
Target Start/End: Complemental strand, 6933 - 6891
Alignment:
Q  252 tactagcataaacacttatgagactgtttggtagagcttatga 294  Q
    ||||||||||||||||| ||||||||||||| |||||||||||    
T  6933 tactagcataaacacttgtgagactgtttgggagagcttatga 6891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 351 - 403
Target Start/End: Complemental strand, 15360897 - 15360845
Alignment:
Q  351 tatagcttatataaaaactgtttgactttattttatctgttgttttcgaaata 403  Q
    |||||||||||| ||||| ||||||||||||||||||| ||||| | ||||||    
T  15360897 tatagcttatatgaaaacagtttgactttattttatcttttgttatagaaata 15360845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 303 - 339
Target Start/End: Complemental strand, 52190182 - 52190146
Alignment:
Q  303 gttttcagcttcttttcgtaagctctccatgatagct 339  Q
    ||||||||||| |||||||||||||||||||||||||    
T  52190182 gttttcagcttattttcgtaagctctccatgatagct 52190146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 254 - 296
Target Start/End: Original strand, 49282548 - 49282590
Alignment:
Q  254 ctagcataaacacttatgagactgtttggtagagcttatgaaa 296  Q
    ||||||||| ||||||||||||||||||| | |||||||||||    
T  49282548 ctagcataagcacttatgagactgtttgggaaagcttatgaaa 49282590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 420
Target Start/End: Original strand, 4363699 - 4363767
Alignment:
Q  351 tatagcttatataaaaactgtttgactttattttatctgttgttttcgaaatagtgtatacataagcact 420  Q
    |||||||||||| ||||| ||||||| |||||| |||| ||||| |  |||||| |||||||||||||||    
T  4363699 tatagcttatatgaaaacagtttgacattatttaatcttttgttat-aaaatagagtatacataagcact 4363767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 388
Target Start/End: Complemental strand, 4548775 - 4548687
Alignment:
Q  302 tgttttcagcttcttttcgtaagctctccatgatagctcatcaaatcag--tatagcttatataaaaactgtttgactttattttatct 388  Q
    |||||| ||||| |||||  |||||||||| ||||||| || ||| |||  |||  ||| ||||||||| |||||||||||||||||||    
T  4548775 tgtttttagcttattttctgaagctctccaagatagcttatgaaaacagcttatgacttgtataaaaacagtttgactttattttatct 4548687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 416
Target Start/End: Complemental strand, 17420206 - 17420141
Alignment:
Q  351 tatagcttatataaaaactgtttgactttattttatctgttgttttcgaaatagtgtatacataag 416  Q
    |||||||||||| |||| |||| ||||||||||||||| || || |  ||||||| ||||||||||    
T  17420206 tatagcttatatgaaaattgttcgactttattttatcttttcttataaaaatagtttatacataag 17420141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 388
Target Start/End: Original strand, 40833902 - 40833939
Alignment:
Q  351 tatagcttatataaaaactgtttgactttattttatct 388  Q
    |||||||||||||||||| |||||| ||||||||||||    
T  40833902 tatagcttatataaaaacagtttgattttattttatct 40833939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 420
Target Start/End: Original strand, 45999355 - 45999424
Alignment:
Q  351 tatagcttatataaaaactgtttgactttattttatctgttgttttcgaaatagtgtatacataagcact 420  Q
    |||||||||||| ||| | |||||||||||| |||||| ||||| | |||||||  ||||||| ||||||    
T  45999355 tatagcttatatgaaagcagtttgactttatcttatcttttgttatagaaatagcttatacatgagcact 45999424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 299 - 339
Target Start/End: Complemental strand, 7472368 - 7472328
Alignment:
Q  299 aactgttttcagcttcttttcgtaagctctccatgatagct 339  Q
    ||||||||||||||| ||||| ||||||||||| |||||||    
T  7472368 aactgttttcagcttattttcataagctctccaagatagct 7472328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 351 - 415
Target Start/End: Original strand, 15565899 - 15565963
Alignment:
Q  351 tatagcttatataaaaactgtttgactttattttatctgttgttttcgaaatagtgtatacataa 415  Q
    ||||| ||||| |||||  ||||||||||||||||||| ||| ||| |||||| | |||||||||    
T  15565899 tatagtttatacaaaaatagtttgactttattttatcttttgctttggaaatattatatacataa 15565963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 250 - 302
Target Start/End: Complemental strand, 17420328 - 17420276
Alignment:
Q  250 tttactagcataaacacttatgagactgtttggtagagcttatgaaatcaact 302  Q
    |||| |||||||||||||| | ||||||||| | ||||||||||||| |||||    
T  17420328 tttattagcataaacacttgttagactgttttgaagagcttatgaaaacaact 17420276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 351 - 387
Target Start/End: Original strand, 28788605 - 28788641
Alignment:
Q  351 tatagcttatataaaaactgtttgactttattttatc 387  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  28788605 tatagcttatatgaaaacagtttgactttattttatc 28788641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 351 - 403
Target Start/End: Complemental strand, 52286681 - 52286629
Alignment:
Q  351 tatagcttatataaaaactgtttgactttattttatctgttgttttcgaaata 403  Q
    |||||||||||| |||| ||||| |||||||||||||| ||||| | ||||||    
T  52286681 tatagcttatatgaaaattgtttaactttattttatcttttgttgtagaaata 52286629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 370 - 420
Target Start/End: Original strand, 1160 - 1210
Alignment:
Q  370 gtttgactttattttatctgttgttttcgaaatagtgtatacataagcact 420  Q
    ||||||||||||||||||| ||||| | |||||||  ||||||||||||||    
T  1160 gtttgactttattttatcttttgttatagaaatagcttatacataagcact 1210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 370 - 420
Target Start/End: Complemental strand, 2815 - 2765
Alignment:
Q  370 gtttgactttattttatctgttgttttcgaaatagtgtatacataagcact 420  Q
    ||||||||||||||||||| ||||| | |||||||  ||||||||||||||    
T  2815 gtttgactttattttatcttttgttatagaaatagcttatacataagcact 2765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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