View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7898_low_3 (Length: 602)
Name: NF7898_low_3
Description: NF7898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7898_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 535; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 18 - 587
Target Start/End: Original strand, 41716797 - 41717367
Alignment:
| Q |
18 |
gaataattggtgaaaatgatcttttagagcagtatagcaaatacaaaggtgcaaacagagagaaggggaaaaatctctctggttttcaagccaaaatttc |
117 |
Q |
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| T |
41716797 |
gaataattggtgaaaatgatcttttagagcagtatagcaaatacaaaggtgcaaacagagagaaggggaaaaatctctctggttttcaagccaaaatttc |
41716896 |
T |
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| Q |
118 |
agaagtttagaatattaaagactgaagtgcatatcacgatccaagaaaaaacacattgagaaaggaaacagaatcgccaatgctagaagttatctgggag |
217 |
Q |
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| T |
41716897 |
agaagtttagaatattaaagactgaagtgcatatcacgatccaagaaaaaacacattgagaaaggaaagagaatcgccaatgctagaagttatctgggag |
41716996 |
T |
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| Q |
218 |
tgagcagctagttcacagagttttgtttgaagaactacttttttctttgttgcatactaattgtcggccttagccctgaagtccctccccggttatcttc |
317 |
Q |
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| T |
41716997 |
tgagcagctagttcacagagttttgtttgaagaaatacttttttctttgttgcatactaattgtcggccttagccctgaagtccctccccggttatcttc |
41717096 |
T |
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| Q |
318 |
cccttaatacgtacaatatttcaagttaattgtcttagttgtttatcaaagtgtgtatgagtatgactcggtcgaagaattatatttcaatgtcaaagtt |
417 |
Q |
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| T |
41717097 |
cccttaatacgtacaatatttcaagttaattgtcttagttgtttatcaaagtgtgtatgagtatgactcggtcgaagaattatatttcaatgtcaaagtt |
41717196 |
T |
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| Q |
418 |
caaatgtcat-ttaaataactgcctttctagttgaaaataatatgaaagtcaacaatactattataatgaagagaaacgaatcacagaacatgacaatag |
516 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41717197 |
caaatgtcataaaaaataactgcctttctagttgaaaataatatgacagtcgacaatactattataatgaagagaaacgaatcacagaacatgacaatag |
41717296 |
T |
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| Q |
517 |
caatgcacacaaaaatttacctccggaagctttttacggaacactacatccagccgtgcatcaagagtatt |
587 |
Q |
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| T |
41717297 |
caatgcacacaaaaaattacctccggaagctttttacggaacactacatccagccgtgcatcaagagtatt |
41717367 |
T |
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