View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7899_high_1 (Length: 611)
Name: NF7899_high_1
Description: NF7899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7899_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 176 - 602
Target Start/End: Complemental strand, 33506177 - 33505746
Alignment:
| Q |
176 |
attaaaaaatatataaagatagtaaattaaagtagcaatattgcaatattataaatgttatgtgttttttatggagtta-----ttctcacataatcaca |
270 |
Q |
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| T |
33506177 |
attaaaaaatatataaagatagtaaattaaagtagcaatattgcaatattataaatgttatgtgttttttatggagttacgttattctcacataatcaca |
33506078 |
T |
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| Q |
271 |
agataaatcaataatgtttaaccacacaaacaataaaatacnnnnnnnaatagttnnnnnnntttgatttaacattttaagagaaaaattatatttgtgt |
370 |
Q |
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| T |
33506077 |
agataaatcaataatgtttaaccacacaaacaataaaatactttttttaatagttaaaaaaatttgatttaacattttaagagaaaatttatatttgtgt |
33505978 |
T |
|
| Q |
371 |
gtacgcctctaaactctatagatttgaagggatcatttttgctagtgttctatgcactacaataatgataaacaaataacggaaggaaacttcgtaatct |
470 |
Q |
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| T |
33505977 |
gtacgcctctaaacactatagatttgaagggatcatttttgctagtgttctatgcactacaataatgataaacaaataacggaaggaaacttcgtaatct |
33505878 |
T |
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| Q |
471 |
attggcaaagtttcagggaaccatccatttatttatttatcaatttcattgcataacttcatggaataaaattgattataatatagattatgacaataat |
570 |
Q |
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| T |
33505877 |
attgacaaagtttcagggaaccatccatttatttatttatcaatttcattgcataacttcatggaataaaattgattataatatagattatgacaataat |
33505778 |
T |
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| Q |
571 |
tttgttcggagaatgttcttattcatctcact |
602 |
Q |
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| T |
33505777 |
tttgttcggagaatgttcttattcatctcact |
33505746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 17 - 184
Target Start/End: Complemental strand, 33506544 - 33506377
Alignment:
| Q |
17 |
acttttgggccattggcaatgatgcagtggttaattaaacttttttcttgagaggttaatcaaacctagtacttcagtttgtgattgatatgcaatggaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33506544 |
acttttgggccattggcaatgatgcagtggttaattaaacttttttctggagaggttaatcaaacctagtacttcagtttgtgattgatatgcaatggaa |
33506445 |
T |
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| Q |
117 |
cacattcatgattcacatgacttgtccaagacctagctagtgctataaaaacggtacaaattaaaaaa |
184 |
Q |
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| T |
33506444 |
cacattcatgattcacatgacttgtccaagacctagctagtgctataaaaacggtacaaattaaaaaa |
33506377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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