View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7899_high_19 (Length: 232)
Name: NF7899_high_19
Description: NF7899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7899_high_19 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 13 - 215
Target Start/End: Complemental strand, 43376987 - 43376785
Alignment:
| Q |
13 |
agcagagaatatatagaatagtaatgttgtttttcttattgtctgattaaaagggattaaacaggcactagttaaactttatagtgtatactaagaaagc |
112 |
Q |
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| T |
43376987 |
agcagagaatatatagaatagtaatgttgtttttcttattgtctgattaaaagggattaaacaggcactagttaaactttatagtgtatactaagaaagc |
43376888 |
T |
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| Q |
113 |
taaaatttaactctccatatacgggaacactgccaggatcatgctgtattttttatttggaaaggcattcaaatgctcgattaacattcacataaatttc |
212 |
Q |
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| T |
43376887 |
aaaaatttaactctccatatacgggaacactgccaggatcatgctgtattttttatttggaaaggcattcaaatgctcgattaacattcacataaatttc |
43376788 |
T |
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| Q |
213 |
ctg |
215 |
Q |
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| T |
43376787 |
ctg |
43376785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 107
Target Start/End: Complemental strand, 43377610 - 43377555
Alignment:
| Q |
52 |
tgtctgattaaaagggattaaacaggcactagttaaactttatagtgtatactaag |
107 |
Q |
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| T |
43377610 |
tgtctgattaaaagggattaaacatacaccagttcaactttatagtttatactaag |
43377555 |
T |
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