View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7899_high_2 (Length: 588)

Name: NF7899_high_2
Description: NF7899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7899_high_2
NF7899_high_2
[»] chr6 (1 HSPs)
chr6 (27-571)||(723558-724104)
[»] chr8 (6 HSPs)
chr8 (36-84)||(27868335-27868383)
chr8 (147-229)||(7755181-7755263)
chr8 (46-84)||(11637189-11637227)
chr8 (35-84)||(8418311-8418360)
chr8 (35-84)||(27973695-27973744)
chr8 (35-84)||(28030964-28031013)
[»] chr4 (6 HSPs)
chr4 (45-105)||(49401684-49401744)
chr4 (33-84)||(35998124-35998175)
chr4 (47-84)||(52677052-52677089)
chr4 (41-101)||(8759811-8759871)
chr4 (68-108)||(39979805-39979845)
chr4 (147-223)||(40021071-40021146)
[»] scaffold0086 (1 HSPs)
scaffold0086 (33-84)||(5867-5918)
[»] chr3 (2 HSPs)
chr3 (33-84)||(29858872-29858923)
chr3 (45-81)||(32977809-32977845)
[»] chr7 (2 HSPs)
chr7 (33-103)||(18731469-18731539)
chr7 (68-109)||(49100544-49100585)
[»] scaffold0045 (1 HSPs)
scaffold0045 (68-109)||(26346-26387)
[»] chr5 (1 HSPs)
chr5 (33-122)||(4475257-4475346)
[»] chr1 (5 HSPs)
chr1 (67-108)||(5563039-5563080)
chr1 (40-100)||(25869716-25869776)
chr1 (45-82)||(28706643-28706680)
chr1 (37-78)||(40061864-40061905)
chr1 (45-101)||(12267651-12267707)
[»] chr2 (1 HSPs)
chr2 (33-101)||(9724910-9724978)


Alignment Details
Target: chr6 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 27 - 571
Target Start/End: Original strand, 723558 - 724104
Alignment:
Q  27 cggatctgagtgttcttatcaagtattgatacatttatctttatcataaatgtaaagtggacgatattgcattggaaatgatagaatgagtattaagagt 126  Q
    ||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  723558 cggatctgagtgttcttatcaagtattaatgcattcatctttatcataaatgtaaagtggatgatattgcattggaaatgatagaatgagtattaagagt 723657  T
Q  127 gtataattgnnnnnnnnnnt--attaatattgcattgaaaaatgaaatgtgccaattattttagaataatatatgtttttacaaatgagtctcttattat 224  Q
    |||||||||             ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  723658 gtataattgaaaaaaaaatatcattaatattgcattgaaaaatgaaatgagccaattattttagaataatatatgtttttacaaatgagtctcttattat 723757  T
Q  225 ggaacaaagataatcccttnnnnnnnnnnnntggaacaaaggtaaggtattatgttatacgagtatacaattaactcagtggttgataagcttcctaaaa 324  Q
    |||||||||||||||||||            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||    
T  723758 ggaacaaagataatcccttaaaaaagaaaaatggaacaaaggtaaggtattatgttatatgagtatacaattaactcagtggttgataggcttcctaaaa 723857  T
Q  325 atcctagttgattttagccaaattatacgtatctcacgatcgaactttagatcataagagccttttccggatggaaatcgtagggttaacatcaaaaaca 424  Q
    |||||||||| ||||||||| |||| | |||||| ||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||     
T  723858 atcctagttggttttagccagattaaatgtatcttacgatcgaattttagatcataagagcctttttcggatggaaatcggagggttaacatcaaaaact 723957  T
Q  425 ttttgactcttacttttattattttaataatagtaacactaaagattaaacatatccaaaacatagaacaaaaactaaacgaacactacactcactttca 524  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  723958 ttttgactcttacttttattattttaataatagtaacactaaagattaaacatatccaaaacatagaacaaaaactaaacgaacactacactcactttca 724057  T
Q  525 cttttcaattttcatcaggtgaattcttttgatcaaggtgagtattt 571  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  724058 cttttcaattttcatcaggtgaattcttttgatcaaggtgagtattt 724104  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 27868335 - 27868383
Alignment:
Q  36 gtgttcttatcaagtattgatacatttatctttatcataaatgtaaagt 84  Q
    |||||||| |||||||||||| |||||||| |||||||||||| |||||    
T  27868335 gtgttcttgtcaagtattgatccatttatcattatcataaatgcaaagt 27868383  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 147 - 229
Target Start/End: Original strand, 7755181 - 7755263
Alignment:
Q  147 attaatattgcattgaaaaatgaaatgtgccaattattttagaataatatatgtttttacaaatgagtctcttattatggaac 229  Q
    |||||||||||||| |||| ||||||| | || ||||||||  ||||||| | ||||||||||  | || |||||||||||||    
T  7755181 attaatattgcattaaaaattgaaatgagtcagttattttacgataatatttttttttacaaaatactcacttattatggaac 7755263  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 46 - 84
Target Start/End: Complemental strand, 11637227 - 11637189
Alignment:
Q  46 caagtattgatacatttatctttatcataaatgtaaagt 84  Q
    ||||||||||||||||  |||||||||||||||||||||    
T  11637227 caagtattgatacattattctttatcataaatgtaaagt 11637189  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 84
Target Start/End: Original strand, 8418311 - 8418360
Alignment:
Q  35 agtgttcttatcaagtattgatacatttatctttatcataaatgtaaagt 84  Q
    |||||| || |||||||||||| ||||  |||||||||||||||||||||    
T  8418311 agtgtttttgtcaagtattgatgcattattctttatcataaatgtaaagt 8418360  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 84
Target Start/End: Original strand, 27973695 - 27973744
Alignment:
Q  35 agtgttcttatcaagtattgatacatttatctttatcataaatgtaaagt 84  Q
    ||||||||| |||||||||||| |||||| | |||||||||||| |||||    
T  27973695 agtgttcttgtcaagtattgatccatttaccattatcataaatgcaaagt 27973744  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 84
Target Start/End: Original strand, 28030964 - 28031013
Alignment:
Q  35 agtgttcttatcaagtattgatacatttatctttatcataaatgtaaagt 84  Q
    ||||||||| |||||||||||| |||||| | |||||||||||| |||||    
T  28030964 agtgttcttgtcaagtattgatccatttaccattatcataaatgcaaagt 28031013  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 45 - 105
Target Start/End: Complemental strand, 49401744 - 49401684
Alignment:
Q  45 tcaagtattgatacatttatctttatcataaatgtaaagtggacgatattgcattggaaat 105  Q
    |||||||||||||||||  ||||||| ||||||||||||| ||  |||||| |||||||||    
T  49401744 tcaagtattgatacattgttctttattataaatgtaaagtagaatatattgaattggaaat 49401684  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 84
Target Start/End: Original strand, 35998124 - 35998175
Alignment:
Q  33 tgagtgttcttatcaagtattgatacatttatctttatcataaatgtaaagt 84  Q
    |||||||  ||||||||||||| ||||||  |||||||||||||||||||||    
T  35998124 tgagtgtctttatcaagtattggtacattcttctttatcataaatgtaaagt 35998175  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 84
Target Start/End: Original strand, 52677052 - 52677089
Alignment:
Q  47 aagtattgatacatttatctttatcataaatgtaaagt 84  Q
    |||||||||| |||||||| ||||||||||||||||||    
T  52677052 aagtattgatgcatttatcattatcataaatgtaaagt 52677089  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 41 - 101
Target Start/End: Complemental strand, 8759871 - 8759811
Alignment:
Q  41 cttatcaagtattgatacatttatctttatcataaatgtaaagtggacgatattgcattgg 101  Q
    |||||||| ||||||| ||||| ||||||||||||||| ||||| ||  |||||| |||||    
T  8759871 cttatcaactattgatgcatttttctttatcataaatgcaaagtagaatatattgaattgg 8759811  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 68 - 108
Target Start/End: Complemental strand, 39979845 - 39979805
Alignment:
Q  68 tatcataaatgtaaagtggacgatattgcattggaaatgat 108  Q
    ||||||||||||||||||||  |||||| ||||||||||||    
T  39979845 tatcataaatgtaaagtggaatatattgaattggaaatgat 39979805  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 147 - 223
Target Start/End: Original strand, 40021071 - 40021146
Alignment:
Q  147 attaatattgcattgaaaaatgaaatgtgccaattattttagaataatatatgtttttacaaatgagtctcttatta 223  Q
    |||||||||||||||| || ||||||| | || ||||||||| | ||||| | |||||||||| ||||| |||||||    
T  40021071 attaatattgcattgagaactgaaatgggtcagttattttaggacaatat-tttttttacaaaagagtcacttatta 40021146  T

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Target: scaffold0086 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 5918 - 5867
Alignment:
Q  33 tgagtgttcttatcaagtattgatacatttatctttatcataaatgtaaagt 84  Q
    |||||||  ||||||||||||||| ||||  |||||||||||||||||||||    
T  5918 tgagtgtctttatcaagtattgatgcattgctctttatcataaatgtaaagt 5867  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 84
Target Start/End: Original strand, 29858872 - 29858923
Alignment:
Q  33 tgagtgttcttatcaagtattgatacatttatctttatcataaatgtaaagt 84  Q
    |||||||| || |||||||||| ||||||  |||||||||||||||||||||    
T  29858872 tgagtgtttttgtcaagtattggtacattcttctttatcataaatgtaaagt 29858923  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 32977809 - 32977845
Alignment:
Q  45 tcaagtattgatacatttatctttatcataaatgtaa 81  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  32977809 tcaagtattgatgcatttttctttatcataaatgtaa 32977845  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 33 - 103
Target Start/End: Complemental strand, 18731539 - 18731469
Alignment:
Q  33 tgagtgttcttatcaagtattgatacatttatctttatcataaatgtaaagtggacgatattgcattggaa 103  Q
    |||||||  |||||||||||||||  |||  ||||||||||||||||||||| ||  |||||| |||||||    
T  18731539 tgagtgtctttatcaagtattgatgaattcttctttatcataaatgtaaagtagaatatattgaattggaa 18731469  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 109
Target Start/End: Original strand, 49100544 - 49100585
Alignment:
Q  68 tatcataaatgtaaagtggacgatattgcattggaaatgata 109  Q
    ||||||||||||||||||||  |||||| |||||||||||||    
T  49100544 tatcataaatgtaaagtggaatatattgaattggaaatgata 49100585  T

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Target: scaffold0045 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 109
Target Start/End: Complemental strand, 26387 - 26346
Alignment:
Q  68 tatcataaatgtaaagtggacgatattgcattggaaatgata 109  Q
    ||||||||||||||||||||  |||||| |||||||||||||    
T  26387 tatcataaatgtaaagtggaatatattgaattggaaatgata 26346  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 122
Target Start/End: Complemental strand, 4475346 - 4475257
Alignment:
Q  33 tgagtgttcttatcaagtattgatacatttatctttatcataaatgtaaagtggacgatattgcattggaaatgatagaatgagtattaa 122  Q
    ||||||| ||| |||||||||| | |||| | | |||||||||||| ||||||||  || ||| ||||||||||||| ||  ||||||||    
T  4475346 tgagtgtccttgtcaagtattggtgcattcaccattatcataaatgcaaagtggaaaatgttgaattggaaatgataaaagtagtattaa 4475257  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 108
Target Start/End: Complemental strand, 5563080 - 5563039
Alignment:
Q  67 ttatcataaatgtaaagtggacgatattgcattggaaatgat 108  Q
    |||||||||||||||||||||  |||||| ||||||||||||    
T  5563080 ttatcataaatgtaaagtggaacatattgaattggaaatgat 5563039  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 100
Target Start/End: Complemental strand, 25869776 - 25869716
Alignment:
Q  40 tcttatcaagtattgatacatttatct-ttatcataaatgtaaagtggacgatattgcattg 100  Q
    |||||| |||||||||||||||| ||| |||||||||||||||||| ||  |||||||||||    
T  25869776 tcttattaagtattgatacattt-tctattatcataaatgtaaagtagaatatattgcattg 25869716  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 82
Target Start/End: Original strand, 28706643 - 28706680
Alignment:
Q  45 tcaagtattgatacatttatctttatcataaatgtaaa 82  Q
    |||||||||||| ||||| |||||||||||||||||||    
T  28706643 tcaagtattgatgcatttttctttatcataaatgtaaa 28706680  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 78
Target Start/End: Complemental strand, 40061905 - 40061864
Alignment:
Q  37 tgttcttatcaagtattgatacatttatctttatcataaatg 78  Q
    |||||||||||||||||| ||||||| || ||||||||||||    
T  40061905 tgttcttatcaagtattgttacatttttcattatcataaatg 40061864  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 12267651 - 12267707
Alignment:
Q  45 tcaagtattgatacatttatctttatcataaatgtaaagtggacgatattgcattgg 101  Q
    |||||||||| ||||||  ||||||||||||||||||||| ||  |||||| |||||    
T  12267651 tcaagtattggtacattcttctttatcataaatgtaaagtagaatatattgaattgg 12267707  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 101
Target Start/End: Complemental strand, 9724978 - 9724910
Alignment:
Q  33 tgagtgttcttatcaagtattgatacatttatctttatcataaatgtaaagtggacgatattgcattgg 101  Q
    |||||| | ||||||||||||| | ||||  ||||||||||||||||||||| ||  |||||| |||||    
T  9724978 tgagtgcttttatcaagtattggtgcattcttctttatcataaatgtaaagtagaatatattgaattgg 9724910  T

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