View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7899_high_3 (Length: 542)
Name: NF7899_high_3
Description: NF7899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7899_high_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 18 - 524
Target Start/End: Original strand, 29412641 - 29413147
Alignment:
| Q |
18 |
cctttgacacatccaatccttctaatgtcaagttttcttcatcctttccactaggcttggctgcttcttcataagtctcttcaaaggcaacacctttgtc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29412641 |
cctttgacacatccaatccttctaatgtcaagttttcttcatcctttccactaggcttggatgcttcttcataagtctcttcaaaggcaacacctttgtc |
29412740 |
T |
|
| Q |
118 |
tccggattcattctgaatctcactatagtccatttccaatggcaagttttcatgcttacttggtggaaaggcgaagtgaccagacatgaacaaagtgttc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
29412741 |
tccggattcattctgaatctcactatagtccttttccaatggcaagttttcatgcttacttggtggaaaggcgaagtgaccagacatgaacaaagcgttc |
29412840 |
T |
|
| Q |
218 |
gatgtctcagcttcatttattgcgtatgcatcttccttgtcatcatccttcaattcaacttcacgtggaccaggagcagctgcataagttgatgctgtga |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29412841 |
gatgtctcagcttcatttattgcgtatgcatcttccttgtcatcatccttcaactcaacttcacgtggaccaggagcagctgcataagttgatgctgtga |
29412940 |
T |
|
| Q |
318 |
gagatacaacctcccagtcattaccgcgagaagacttgtccccttcatcttcagttcctgccatcttttgtcttcatcaaaaagttgatatcagagttct |
417 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29412941 |
gagatacaacctcccagtcattactgcgagaagacttttccccttcatcttcagttcctgccatcttttgtcttcatcaaaaagttgatatcagagttct |
29413040 |
T |
|
| Q |
418 |
aatttaactacaaaaccaaaaagtgaaaaacaaacatacatagcaaaagcaattatgcaggcaggggagaggtagggcagctaggttgaccaaaaaagat |
517 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| | |
|
|
| T |
29413041 |
aattttactacaaaaccaaaaagtgaaaaacaaacgcacgtagcaaaaacaattatgcaggcaggggagaggtagggcagttaggttgaccaaaaaaggt |
29413140 |
T |
|
| Q |
518 |
gtctgat |
524 |
Q |
| |
|
||||||| |
|
|
| T |
29413141 |
gtctgat |
29413147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 18 - 515
Target Start/End: Complemental strand, 10161538 - 10161035
Alignment:
| Q |
18 |
cctttgacacatccaatccttctaatgtcaagttttcttcatcctttccactaggcttggctgcttcttcataagtctcttcaaaggcaacacctttgtc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10161538 |
cctttgacacatccaatccttctaatgtcaagttttcttcatcctttccactaggcttggctgcttcttcataagtctcttcaaaggcaacacctttgtc |
10161439 |
T |
|
| Q |
118 |
tccggattcattctgaatctcactatagtccatttccaatggcaagttttcatgcttacttggtggaaaggcgaagtgaccagacatgaacaaagtgttc |
217 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
10161438 |
tccggattcattatgaatctcactatagtctgtttccaatggcaagttttcatgcttacttggtggaaaggcgaagtgaccagacatgaacaaagcgttc |
10161339 |
T |
|
| Q |
218 |
gatgtctcagcttcatttattgcgtatgcatcttccttgtcatcatccttcaattcaacttcacgtggaccaggagcagctgcataagttgatgctgtga |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
10161338 |
gatgtctcagcttcatttattgcgtatgcatcttccttgtcatcatccttcaactcaacttcacgtggaccaggagtagctgcataagttgatgttgtga |
10161239 |
T |
|
| Q |
318 |
gagatacaacctcccagtcattaccgcgagaagacttgtccccttcatcttcagttcctgccatcttttgtcttcatcaaaaagttgatatcagagttct |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
10161238 |
gagatacaacctcccagtcattaccgcgagaagacttgtccccttcattttcagttcctgccatcttttgtcttcatcaaaaagttgctatcagagttct |
10161139 |
T |
|
| Q |
418 |
aatttaactacaaaacc------aaaaagtgaaaaacaaacatacatagcaaaagcaattatgcaggcaggggagaggtagggcagctaggttgaccaaa |
511 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
10161138 |
aattttactacaaaaccaaaaccaaaaagtgaaaaacaaacatacatagcaaaagcaattatgcaggcaggggagaggtagggcagttaggttgatcaaa |
10161039 |
T |
|
| Q |
512 |
aaag |
515 |
Q |
| |
|
|||| |
|
|
| T |
10161038 |
aaag |
10161035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University