View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7899_high_4 (Length: 496)
Name: NF7899_high_4
Description: NF7899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7899_high_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 1 - 487
Target Start/End: Original strand, 38737221 - 38737716
Alignment:
| Q |
1 |
ggaaataatgaaagagactcatcttccggtgatgaggggggtacagaactccgacagagaaaacgaaagagatggaccagagttcgctcctctcagccct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38737221 |
ggaaataatgaaagagactcatcttccggtgatgaggggggtacagaactccgacagagaaaacgaaagagatggaccagagttcgctcctctcagccct |
38737320 |
T |
|
| Q |
101 |
catcgtcaatggcaagtcctgatggtggaagtatagaaagtgatctggatataaatagagaaaatcgaggaacttctaggctggtgacaaaagctagaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38737321 |
catcgtcaatggcaagtcctgatggtggaagcatagaaagtgatctggatataaatagagaaaatcgaggaacttctaggctggtgacaaaagctagaaa |
38737420 |
T |
|
| Q |
201 |
gcttacttggggaaggggtggttttcggagtaacacaagatatggcagtggtggtggtagcaacggcaagagttcccgtagtggtcgaatgtctaggttg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38737421 |
gcttacttggggaaggggtggttttcggagtaacacaagatatggcagtggtggtggtagcaacggcaagagttcccgtagtggtcgaatgtctaggttg |
38737520 |
T |
|
| Q |
301 |
gttgattatctcaaaaacttgaatgagaacactgatgaggtataagttc---------nnnnnnnnctctctctcttgtaatggaccaatgaaaaatgat |
391 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
38737521 |
gttgattatctcaaaaacttgaatgagaacactgatgaggtataagttctttttttttttttttctctctctctcttgtaatggaccaatgaaaaatgat |
38737620 |
T |
|
| Q |
392 |
actacgtattgcttctttattatacttgtattcttatttcagttcaatttaacaaatagataccgtcttttatttacagtttgatgtccatttcat |
487 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||| |
|
|
| T |
38737621 |
actacgtattgcttctttattatacttgtattcttatttcagttcaatttaacaaatagatactgtcttttatttacagtttgatgttcatctcat |
38737716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University