View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7899_high_9 (Length: 340)
Name: NF7899_high_9
Description: NF7899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7899_high_9 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 9 - 340
Target Start/End: Complemental strand, 13979631 - 13979300
Alignment:
| Q |
9 |
tgagatgaacaatatcaccatctaacatggacctttcgacaaaacatctaaactaaactcacatcttagacaaagatggtcattttcaaataacaaattt |
108 |
Q |
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| T |
13979631 |
tgagatgaacaatatcaccatctaacatggacctttcgacaaaacatctaaactaaactcacatcttagacaaagatggtcattttcaaataacaaattt |
13979532 |
T |
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| Q |
109 |
tatattggatgaattgaatacacttacaataatgtcacaatgtctttctattgaacatcacatgtgataccctacaacatatgtcgacctcaaacattac |
208 |
Q |
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| T |
13979531 |
tatattggatgaattgaatacacttacaataatgtcacaatgtctttctattgaacatcacatgtgataccctacaacatatgtcgacctcaaacattac |
13979432 |
T |
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| Q |
209 |
ataattaatcatacatatttgaacttgaaaagccaaattcatatgaattggttggcacttcaattctgtcccaaaataggctacaattataccaaacagc |
308 |
Q |
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| T |
13979431 |
ataattaatcatacatatttgaacttgaaaagccaaattcatatgaattggttggcacttcaattctgtcccaaaataggctacaattataccaaacagc |
13979332 |
T |
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| Q |
309 |
atcttgtaggatctaaaaactccaattatgtc |
340 |
Q |
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| T |
13979331 |
atcttgtaggatctaaaaactccaattatgtc |
13979300 |
T |
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