View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7899_low_10 (Length: 328)
Name: NF7899_low_10
Description: NF7899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7899_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 11 - 304
Target Start/End: Original strand, 17489008 - 17489300
Alignment:
| Q |
11 |
agaaaataacgaaccaacgaccccccacaatgatttatttttcattggataataacgaatctttcactttgcttaagctacactctttttgtagagggtt |
110 |
Q |
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|||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
17489008 |
agaatataacgaaccaacgaccccccacaaagatttatttt-cattggataataacgaacctttcactttgcttaagctacactctttttgtagagggtt |
17489106 |
T |
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| Q |
111 |
ttaaattaaactacccaattaattttgggaaaagggaagaagatgataaattactgccttnnnnnnnnnnnnnnnnnnnnnnnnngaagtgtatgctatt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
17489107 |
ttaaattaaactacccaattaattttgggaaaagggaagaagatgataaattactgcctttaaaatataataaaaataataagaagaagtgtatgctatt |
17489206 |
T |
|
| Q |
211 |
gacttcacttaatcgttacctttgtttaaaccacactcttaagtaaaatttaaactatatgaaagatataaaataatgagtgtaaaaatataag |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17489207 |
gacttcacttaatcgttacctttgtttaaaccacactcttaagtaaaatttaaactatatgaaagatataaaataatgagtgtaaaaatataag |
17489300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 11 - 304
Target Start/End: Complemental strand, 17564206 - 17563914
Alignment:
| Q |
11 |
agaaaataacgaaccaacgaccccccacaatgatttatttttcattggataataacgaatctttcactttgcttaagctacactctttttgtagagggtt |
110 |
Q |
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|||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
17564206 |
agaatataacgaaccaacgaccccccacaaagatttatttt-cattggataataacgaacctttcactttgcttaagctacactctttttgtagagggtt |
17564108 |
T |
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| Q |
111 |
ttaaattaaactacccaattaattttgggaaaagggaagaagatgataaattactgccttnnnnnnnnnnnnnnnnnnnnnnnnngaagtgtatgctatt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
17564107 |
ttaaattaaactacccaattaattttgggaaaagggaagaagatgataaattactgcctttaaaatataataaaaataataagaagaagtgtatgctatt |
17564008 |
T |
|
| Q |
211 |
gacttcacttaatcgttacctttgtttaaaccacactcttaagtaaaatttaaactatatgaaagatataaaataatgagtgtaaaaatataag |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17564007 |
gacttcacttaatcgttacctttgtttaaaccacactcttaagtaaaatttaaactatatgaaagatataaaataatgagtgtaaaaatataag |
17563914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 11 - 304
Target Start/End: Original strand, 1917194 - 1917486
Alignment:
| Q |
11 |
agaaaataacgaaccaacgaccccccacaatgatttatttttcattggataataacgaatctttcactttgcttaagctacactctttttgtagagggtt |
110 |
Q |
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|
|||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
1917194 |
agaatataacgcaccaacgaccccccacaatgatttatttt-cattggataataacgaacctttcactttgcttaagctacactctttttgtagagggtt |
1917292 |
T |
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| Q |
111 |
ttaaattaaactacccaattaattttgggaaaagggaagaagatgataaattactgccttnnnnnnnnnnnnnnnnnnnnnnnnngaagtgtatgctatt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
1917293 |
ttaaattaaactacccaattaattttgggaaaagggaagaagatgataaattactgcctttaaaatataataaaaataataataagaagtgtatgctatt |
1917392 |
T |
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| Q |
211 |
gacttcacttaatcgttacctttgtttaaaccacactcttaagtaaaatttaaactatatgaaagatataaaataatgagtgtaaaaatataag |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1917393 |
gacttcacttaatcgttacctttgtttaaaccacactcttaagtaaaatttaaactatatgaaagatataaaataatgagtgtaaaaatataag |
1917486 |
T |
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