View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7899_low_13 (Length: 285)

Name: NF7899_low_13
Description: NF7899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7899_low_13
NF7899_low_13
[»] chr4 (6 HSPs)
chr4 (15-267)||(38178453-38178705)
chr4 (163-244)||(5531862-5531943)
chr4 (171-244)||(5922085-5922158)
chr4 (65-101)||(5654607-5654643)
chr4 (65-101)||(10546155-10546191)
chr4 (65-101)||(18513257-18513293)
[»] chr2 (3 HSPs)
chr2 (163-267)||(11733557-11733661)
chr2 (65-101)||(18570979-18571015)
chr2 (65-101)||(25544488-25544524)
[»] chr8 (4 HSPs)
chr8 (164-263)||(45319609-45319708)
chr8 (63-100)||(1639495-1639532)
chr8 (72-101)||(27733861-27733890)
chr8 (63-100)||(34201063-34201100)
[»] chr7 (5 HSPs)
chr7 (168-267)||(34840062-34840161)
chr7 (72-107)||(35917390-35917425)
chr7 (67-101)||(30516373-30516407)
chr7 (65-101)||(38134422-38134458)
chr7 (65-101)||(44172906-44172942)
[»] chr3 (2 HSPs)
chr3 (65-101)||(40150587-40150623)
chr3 (65-101)||(34409358-34409394)
[»] scaffold0037 (1 HSPs)
scaffold0037 (65-100)||(102912-102947)
[»] chr6 (5 HSPs)
chr6 (65-100)||(6299519-6299554)
chr6 (65-100)||(6306329-6306364)
chr6 (63-96)||(33135837-33135870)
chr6 (64-96)||(1893390-1893422)
chr6 (65-101)||(19602197-19602233)
[»] chr1 (4 HSPs)
chr1 (192-263)||(45453282-45453353)
chr1 (64-101)||(3921673-3921710)
chr1 (66-102)||(2471228-2471264)
chr1 (65-101)||(11571592-11571628)
[»] scaffold0011 (1 HSPs)
scaffold0011 (65-101)||(240037-240073)
[»] chr5 (1 HSPs)
chr5 (65-101)||(11596471-11596507)


Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 15 - 267
Target Start/End: Complemental strand, 38178705 - 38178453
Alignment:
Q  15 agcagagacattgacacgacatgccgtaaataatttgataaaatgacgtaataatactttgagaaaatgatataattcaatgtaatctcattttggtgct 114  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  38178705 agcacagacattgacacgacatgccgtaaataatttgataaaatgacgtaataatactttgagaaaatgatataattcaatgtaatctcctttcggtgct 38178606  T
Q  115 acaaactactttatgtgttgtgtgtttgagaaatttgtaatgtgtgaacaggatttcaagtgtgtcattcattgggaggtggaactggttctggaatggg 214  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38178605 acaaactacattatgtgttgtgtgtttgagaaatttgtaatgtgtgaacaggatttcaagtgtgtcattcattgggaggtggaactggttctggaatggg 38178506  T
Q  215 aacacttcttatttcgaagattagggaagagtatccggatcgtatgatgttga 267  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38178505 aacacttcttatttcgaagattagggaagagtatccggatcgtatgatgttga 38178453  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 163 - 244
Target Start/End: Original strand, 5531862 - 5531943
Alignment:
Q  163 caggatttcaagtgtgtcattcattgggaggtggaactggttctggaatgggaacacttcttatttcgaagattagggaaga 244  Q
    ||||||||||||| || || ||| | || || |||||||| |||||||||||||| ||||| ||||| ||||| ||||||||    
T  5531862 caggatttcaagtatgccactcacttggtggaggaactgggtctggaatgggaactcttctgatttcaaagatcagggaaga 5531943  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 244
Target Start/End: Complemental strand, 5922158 - 5922085
Alignment:
Q  171 caagtgtgtcattcattgggaggtggaactggttctggaatgggaacacttcttatttcgaagattagggaaga 244  Q
    ||||| ||||||||| | || || |||||||| |||||||||||||| ||||| ||||| ||||| ||||||||    
T  5922158 caagtatgtcattcactaggtggaggaactggatctggaatgggaacccttctcatttcaaagatcagggaaga 5922085  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 5654643 - 5654607
Alignment:
Q  65 ataatactttgagaaaatgatataattcaatgtaatc 101  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  5654643 ataataatttgagaaaatgacataattcaatgtaatc 5654607  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 10546155 - 10546191
Alignment:
Q  65 ataatactttgagaaaatgatataattcaatgtaatc 101  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  10546155 ataataatttgagaaaatgacataattcaatgtaatc 10546191  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 18513293 - 18513257
Alignment:
Q  65 ataatactttgagaaaatgatataattcaatgtaatc 101  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  18513293 ataataatttgagaaaatgacataattcaatgtaatc 18513257  T

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Target: chr2 (Bit Score: 69; Significance: 5e-31; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 163 - 267
Target Start/End: Complemental strand, 11733661 - 11733557
Alignment:
Q  163 caggatttcaagtgtgtcattcattgggaggtggaactggttctggaatgggaacacttcttatttcgaagattagggaagagtatccggatcgtatgat 262  Q
    |||||||||||||||||||||||||||||||||| || ||||| || |||||||||||| | |||||||||||| | ||||| |||||||||||||||||    
T  11733661 caggatttcaagtgtgtcattcattgggaggtggcacgggttcaggcatgggaacacttttgatttcgaagattcgagaagaatatccggatcgtatgat 11733562  T
Q  263 gttga 267  Q
    |||||    
T  11733561 gttga 11733557  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 18570979 - 18571015
Alignment:
Q  65 ataatactttgagaaaatgatataattcaatgtaatc 101  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  18570979 ataataatttgagaaaatgacataattcaatgtaatc 18571015  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 25544488 - 25544524
Alignment:
Q  65 ataatactttgagaaaatgatataattcaatgtaatc 101  Q
    |||||| |||||||||||||||||||||| |||||||    
T  25544488 ataataatttgagaaaatgatataattcagtgtaatc 25544524  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 263
Target Start/End: Original strand, 45319609 - 45319708
Alignment:
Q  164 aggatttcaagtgtgtcattcattgggaggtggaactggttctggaatgggaacacttcttatttcgaagattagggaagagtatccggatcgtatgatg 263  Q
    ||||||||||||||| || || |||||||| ||||| ||||||||||||||||| || || ||||| ||||| || ||||| || || ||||| ||||||    
T  45319609 aggatttcaagtgtgccactccttgggaggaggaacgggttctggaatgggaactctactcatttcaaagatcagagaagaataccctgatcgaatgatg 45319708  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 100
Target Start/End: Original strand, 1639495 - 1639532
Alignment:
Q  63 taataatactttgagaaaatgatataattcaatgtaat 100  Q
    |||||||| ||||||||||||| |||||||||||||||    
T  1639495 taataatattttgagaaaatgacataattcaatgtaat 1639532  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 101
Target Start/End: Original strand, 27733861 - 27733890
Alignment:
Q  72 tttgagaaaatgatataattcaatgtaatc 101  Q
    ||||||||||||||||||||||||||||||    
T  27733861 tttgagaaaatgatataattcaatgtaatc 27733890  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 100
Target Start/End: Complemental strand, 34201100 - 34201063
Alignment:
Q  63 taataatactttgagaaaatgatataattcaatgtaat 100  Q
    |||||||| ||||||||||||| |||||||||||||||    
T  34201100 taataataatttgagaaaatgacataattcaatgtaat 34201063  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 267
Target Start/End: Original strand, 34840062 - 34840161
Alignment:
Q  168 tttcaagtgtgtcattcattgggaggtggaactggttctggaatgggaacacttcttatttcgaagattagggaagagtatccggatcgtatgatgttga 267  Q
    ||||| ||||||||||| |||||||| ||||| || ||||||||||||||  |  | |||||||||||||| || || ||||| ||| | ||||||||||    
T  34840062 tttcaggtgtgtcattcgttgggaggaggaacgggatctggaatgggaactttgttgatttcgaagattagagaggaatatcctgataggatgatgttga 34840161  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 72 - 107
Target Start/End: Complemental strand, 35917425 - 35917390
Alignment:
Q  72 tttgagaaaatgatataattcaatgtaatctcattt 107  Q
    |||||||||||||||||||||||||||||| |||||    
T  35917425 tttgagaaaatgatataattcaatgtaatcacattt 35917390  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 101
Target Start/End: Complemental strand, 30516407 - 30516373
Alignment:
Q  67 aatactttgagaaaatgatataattcaatgtaatc 101  Q
    |||| ||||||||||||||||||||||||||||||    
T  30516407 aataatttgagaaaatgatataattcaatgtaatc 30516373  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 38134458 - 38134422
Alignment:
Q  65 ataatactttgagaaaatgatataattcaatgtaatc 101  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  38134458 ataataatttgagaaaatgacataattcaatgtaatc 38134422  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 44172942 - 44172906
Alignment:
Q  65 ataatactttgagaaaatgatataattcaatgtaatc 101  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  44172942 ataataatttgagaaaatgacataattcaatgtaatc 44172906  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 40150623 - 40150587
Alignment:
Q  65 ataatactttgagaaaatgatataattcaatgtaatc 101  Q
    |||||| ||||||||||||||||||||||||||||||    
T  40150623 ataataatttgagaaaatgatataattcaatgtaatc 40150587  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 34409394 - 34409358
Alignment:
Q  65 ataatactttgagaaaatgatataattcaatgtaatc 101  Q
    ||||||||| |||||||||| ||||||||||||||||    
T  34409394 ataatacttcgagaaaatgacataattcaatgtaatc 34409358  T

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Target: scaffold0037 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 65 - 100
Target Start/End: Original strand, 102912 - 102947
Alignment:
Q  65 ataatactttgagaaaatgatataattcaatgtaat 100  Q
    |||||| |||||||||||||||||||||||||||||    
T  102912 ataataatttgagaaaatgatataattcaatgtaat 102947  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 65 - 100
Target Start/End: Original strand, 6299519 - 6299554
Alignment:
Q  65 ataatactttgagaaaatgatataattcaatgtaat 100  Q
    |||||| |||||||||||||||||||||||||||||    
T  6299519 ataataatttgagaaaatgatataattcaatgtaat 6299554  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 65 - 100
Target Start/End: Original strand, 6306329 - 6306364
Alignment:
Q  65 ataatactttgagaaaatgatataattcaatgtaat 100  Q
    |||||| |||||||||||||||||||||||||||||    
T  6306329 ataataatttgagaaaatgatataattcaatgtaat 6306364  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 96
Target Start/End: Original strand, 33135837 - 33135870
Alignment:
Q  63 taataatactttgagaaaatgatataattcaatg 96  Q
    |||||||| |||||||||||||||||||||||||    
T  33135837 taataataatttgagaaaatgatataattcaatg 33135870  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 96
Target Start/End: Complemental strand, 1893422 - 1893390
Alignment:
Q  64 aataatactttgagaaaatgatataattcaatg 96  Q
    ||||||| |||||||||||||||||||||||||    
T  1893422 aataataatttgagaaaatgatataattcaatg 1893390  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 19602233 - 19602197
Alignment:
Q  65 ataatactttgagaaaatgatataattcaatgtaatc 101  Q
    |||||| |||||||||||||||||||||| |||||||    
T  19602233 ataataatttgagaaaatgatataattcagtgtaatc 19602197  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 263
Target Start/End: Complemental strand, 45453353 - 45453282
Alignment:
Q  192 ggtggaactggttctggaatgggaacacttcttatttcgaagattagggaagagtatccggatcgtatgatg 263  Q
    ||||| |||||||||||||||||||||||| | ||||| ||||| ||||| || || || ||||| ||||||    
T  45453353 ggtggtactggttctggaatgggaacacttttgatttctaagatcagggaggaataccctgatcgaatgatg 45453282  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 101
Target Start/End: Original strand, 3921673 - 3921710
Alignment:
Q  64 aataatactttgagaaaatgatataattcaatgtaatc 101  Q
    ||||||| ||||||||||||| ||||||||||||||||    
T  3921673 aataataatttgagaaaatgacataattcaatgtaatc 3921710  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 102
Target Start/End: Complemental strand, 2471264 - 2471228
Alignment:
Q  66 taatactttgagaaaatgatataattcaatgtaatct 102  Q
    ||||| ||||||||||||| |||||||||||||||||    
T  2471264 taataatttgagaaaatgagataattcaatgtaatct 2471228  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 11571592 - 11571628
Alignment:
Q  65 ataatactttgagaaaatgatataattcaatgtaatc 101  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  11571592 ataataatttgagaaaatgacataattcaatgtaatc 11571628  T

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Target: scaffold0011 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 240073 - 240037
Alignment:
Q  65 ataatactttgagaaaatgatataattcaatgtaatc 101  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  240073 ataataatttgagaaaataatataattcaatgtaatc 240037  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 11596507 - 11596471
Alignment:
Q  65 ataatactttgagaaaatgatataattcaatgtaatc 101  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  11596507 ataataatttgagaaaatgacataattcaatgtaatc 11596471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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