View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7899_low_14 (Length: 257)
Name: NF7899_low_14
Description: NF7899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7899_low_14 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 20 - 257
Target Start/End: Original strand, 13978966 - 13979203
Alignment:
| Q |
20 |
ctgtcttcattgtagtcctcctctagccacctagttgcggcatttgtgttgccttcattgaaaattctgaatttggaccgcatagatttccatcttaatc |
119 |
Q |
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| T |
13978966 |
ctgtcttcattgtagtcctcctctagccacctagttgcggcatttgtgttgccttcattgaaaattctgaatttgtaccgcatagatttccatcttaatc |
13979065 |
T |
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| Q |
120 |
atgtttatacgtttattacacacataattggaatttgagttaaaatttagctgttgaaacatctacaacacgtaaactcttgatgtatttcaggtaagag |
219 |
Q |
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| T |
13979066 |
atgtttatacgtttattacacacataattggaatttgagttaaaatttagctgttgaaacatctacaacacgtaaactcttgatgtatttcaggtaagag |
13979165 |
T |
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| Q |
220 |
ggttacctaccctattgtttattagtcctgatccaaaa |
257 |
Q |
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| T |
13979166 |
ggttacctaccctattgtttattagtcctgatccaaaa |
13979203 |
T |
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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 79
Target Start/End: Original strand, 23721060 - 23721105
Alignment:
| Q |
34 |
gtcctcctctagccacctagttgcggcatttgtgttgccttcattg |
79 |
Q |
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| T |
23721060 |
gtcctcccctagccacctaattgcggcatttgggttgccttcattg |
23721105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 39225226 - 39225174
Alignment:
| Q |
24 |
cttcattgtagtcctcctctagccacctagttgcggcatttgtgttgccttca |
76 |
Q |
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| T |
39225226 |
cttcattgtggtctccctctagccgcctaattgcggcatttgggttgccttca |
39225174 |
T |
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