View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7899_low_16 (Length: 247)
Name: NF7899_low_16
Description: NF7899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7899_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 5330654 - 5330430
Alignment:
| Q |
1 |
actatttttgaaagtccatttgtaatatcaagaatcacaacataactttgtaaccgaacctatacttgaaaactttttatacaattaatattaactttat |
100 |
Q |
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| T |
5330654 |
actatttttgaaagtccaattataatatcaagaatcacaacataactttgtaaccgaacctatacttgaaaactttttatacaattaatattaactttat |
5330555 |
T |
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| Q |
101 |
atcactgacacgtgagatcaaacatatgttatcatattcatgaccaacaacacaactataatacatatagttgcactaaatcatttcaattttataaaat |
200 |
Q |
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| T |
5330554 |
atcactgacacgtgagatcaaacatatgttatcatattcatgaccaacaacacaactataatacatatagttgcactaaatcatttcaattttataaaat |
5330455 |
T |
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| Q |
201 |
tattattaccagggtccacctatat |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
5330454 |
tattattaccagggtccacctatat |
5330430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 151 - 225
Target Start/End: Complemental strand, 20434591 - 20434517
Alignment:
| Q |
151 |
cacaactataatacatatagttgcactaaatcatttcaattttataaaattattattaccagggtccacctatat |
225 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20434591 |
cacaactataatacatatagttgcactaaattatttcaattttataaaattattattaccagggtccacctatat |
20434517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 20434626 - 20434586
Alignment:
| Q |
1 |
actatttttgaaagtccatttgtaatatcaagaatcacaac |
41 |
Q |
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|||||||||||||||||| || ||||||||||||||||||| |
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| T |
20434626 |
actatttttgaaagtccaattataatatcaagaatcacaac |
20434586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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