View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7899_low_5 (Length: 464)
Name: NF7899_low_5
Description: NF7899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7899_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 152; Significance: 3e-80; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 13 - 172
Target Start/End: Original strand, 42697303 - 42697462
Alignment:
| Q |
13 |
aatatcgaaaccttgaccaataactccaccaacactggttaagctatttatatctaaaacgttttttctcatcaacaccaccgttccttttatcttatga |
112 |
Q |
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| T |
42697303 |
aatatcgaaaccttgaccaataactccaccaacactggttaagctatttatatctaaaacattttttctcatcaacaccaccgttccttttatcttatga |
42697402 |
T |
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| Q |
113 |
cccctattcaatatacccgtcacccctgaaaacatctttgcaaataacttaatttattta |
172 |
Q |
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| T |
42697403 |
cccctattcaatatccccgtcacccctgaaaacatctttgcaaataacttaatttattta |
42697462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 202 - 270
Target Start/End: Original strand, 42697464 - 42697532
Alignment:
| Q |
202 |
caacgctgatcagagttcgtgaggatgtcaaacacaggataccagtatttatatagaggagaggtaact |
270 |
Q |
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| T |
42697464 |
caacgctgatcagagttcgtgaggatgtcaaacacaggatacaagtatttatatagaggagaggtaact |
42697532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 372 - 447
Target Start/End: Original strand, 42697626 - 42697698
Alignment:
| Q |
372 |
tgcgataaaattatgtagtaattactataccaaaaaattatttaaagtgacttattgtgtacggtacactgaatcc |
447 |
Q |
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| T |
42697626 |
tgcgataaaattatgta---attactataccaaaaaattatttaaagtgacttattgtgtactgtacactgaatcc |
42697698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 283 - 321
Target Start/End: Original strand, 42697563 - 42697601
Alignment:
| Q |
283 |
tatttttattaaaataaaaatgctttatcgttttcttca |
321 |
Q |
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| T |
42697563 |
tatttttattaaaataaaaatgctttatcgttttcttca |
42697601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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