View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7899_low_6 (Length: 458)
Name: NF7899_low_6
Description: NF7899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7899_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 411; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 20 - 446
Target Start/End: Original strand, 10614873 - 10615299
Alignment:
| Q |
20 |
tgagggccaagtgcaatactgagctcatcagatagcgaaccggcagcagtagttgagtcatcctttccaagctttacaattaaagggttctcatcaacac |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10614873 |
tgagggccaagtgcaatactgagctcatcagatagcgaaccagcagcagtagttgagtcatcctttccaagctttacaattaaagggttctcatcaacac |
10614972 |
T |
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| Q |
120 |
ggttggagtgcttttcttgttcgcgggtaagatcgataagcaaggcctggacaagtaagttggtggagttgagtctttgatgaagctccgataagatcgt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10614973 |
ggttggagtgcttttcttgttcgcgggtaagatcgataagcaaggcctggacaagtaagttggtggagttgagtctttgatgaagctccgataagatcgt |
10615072 |
T |
|
| Q |
220 |
gtggcttgcagcgagttgagctttggtggagttaagttcctgcaatatggagtttgagtcactactactcatagaggagtaccgatacatgaaactaaat |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10615073 |
gtggcttgcagcgagttgagctttggtggagttaagttcctgcaatatggagtttgagtcactactactcatagaggagtaccgatacatgaaactaaat |
10615172 |
T |
|
| Q |
320 |
ggaccggtgaatatgtaaatggtgaaaaggttggtaaatatgattagcataacaaacttcagcttgtgcttttgtgtcagaatgtgagcctgtggattat |
419 |
Q |
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| T |
10615173 |
ggaccggtgaacatgtaaatggtgaaaaggttggtaaatatgattagcataacaaacttcagcttgtgcttttgtgtcagaatgtgagtctgtggattat |
10615272 |
T |
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| Q |
420 |
tataagatggaagctttttcgaatatt |
446 |
Q |
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|||||||||||||||||||||| |||| |
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| T |
10615273 |
tataagatggaagctttttcgagtatt |
10615299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 20 - 393
Target Start/End: Original strand, 10611443 - 10611816
Alignment:
| Q |
20 |
tgagggccaagtgcaatactgagctcatcagatagcgaaccggcagcagtagttgagtcatcctttccaagctttacaattaaagggttctcatcaacac |
119 |
Q |
| |
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||||||||||||||||||| |||||||||||||| | | | ||||| ||| | || ||| | ||| |||| ||| || | || | ||||| || || |
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| T |
10611443 |
tgagggccaagtgcaataccgagctcatcagatattgtagcagcagctgtattggaatcaccgtttacaaggtttgcagtcaaggtgttcttgtctgcat |
10611542 |
T |
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| Q |
120 |
ggttggagtgcttttcttgttcgcgggtaagatcgataagcaaggcctggacaagtaagttggtggagttgagtctttgatgaagctccgataagatcgt |
219 |
Q |
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||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||| ||||||||||| ||||| ||||| || || |
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| T |
10611543 |
ggttggattgtttttcttgttcgcgggtgagatcgataagcaaggcctggacaagtaaattagtggagtttagtctttgatgcagctcagataatattgt |
10611642 |
T |
|
| Q |
220 |
gtggcttgcagcgagttgagctttggtggagttaagttcctgcaatatggagtttgagtcactactactcatagaggagtaccgatacatgaaactaaat |
319 |
Q |
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|||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||| |||||| |||||||||||||||| |
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| T |
10611643 |
gtggcttgcagcaagttgagctttggtggagttgagttcctgcaagatggagtttgagtcactaggactcatagaagagtacttatacatgaaactaaat |
10611742 |
T |
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| Q |
320 |
ggaccggtgaatatgtaaatggtgaaaaggttggtaaatatgattagcataacaaacttcagcttgtgcttttg |
393 |
Q |
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||||| ||||| ||||||||||||| ||||||||||||||||||||||||| | | ||||||||||||||||| |
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| T |
10611743 |
ggaccagtgaacatgtaaatggtgacaaggttggtaaatatgattagcatagaagatttcagcttgtgcttttg |
10611816 |
T |
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