View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7899_low_7 (Length: 435)
Name: NF7899_low_7
Description: NF7899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7899_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 390; Significance: 0; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 8 - 421
Target Start/End: Original strand, 11315444 - 11315857
Alignment:
| Q |
8 |
aaactttgctaggaaattttgagattgaaattcctccagttccagcaggtgttcctaagattcgaatcaacttccaaattgatcatgatggcatattaca |
107 |
Q |
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| T |
11315444 |
aaactttgctaggaagttttgagattgaaattcctccagttccagcaggtgttcctaagattcgaatcaacttccaaattgatcatgatggcatattaca |
11315543 |
T |
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| Q |
108 |
tgtctatgtctcggaaaaacatcttggaattcataataagaagcttgtaatcatcgcaagtgacaaggtaaggcggtcaatgaaggaaattgagaggaag |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11315544 |
tgtctatgtctcggaaaaacatcttggaattcataataagaagcttgtaatcactgtaagtgacaaggtaaggcggtcaatgaaggaaattgagaggaag |
11315643 |
T |
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| Q |
208 |
atcaacgaagctgagaagtacaaagacgaagttaagagacgtaggatgatggtagaagcagacaagagacgtaggaagaacgcgataaatgcagtaaaaa |
307 |
Q |
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| T |
11315644 |
atcaacgaagctgagaagtacaaagacgaagttaagagacgtaggatgatggtagaagcggacaagagacgtaggaagaacgcgataaatgcagtaaaaa |
11315743 |
T |
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| Q |
308 |
ggtatgcatacaagatgaaggatgccattaatgataaggatattagctttatgcttctgtcaaaagaaaagaaaaagatcaatgatgcaattggtttgac |
407 |
Q |
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| T |
11315744 |
ggtatgcatacaagatgaaggatgccattaatgataaggatattagctttatgcttttgtcaaaagaaaagaaaaagatcaatgatgcaattggtttgac |
11315843 |
T |
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| Q |
408 |
tttactctggcttc |
421 |
Q |
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| T |
11315844 |
tttactctggcttc |
11315857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 309 - 405
Target Start/End: Complemental strand, 11155435 - 11155339
Alignment:
| Q |
309 |
gtatgcatacaagatgaaggatgccattaatgataaggatattagctttatgcttctgtcaaaagaaaagaaaaagatcaatgatgcaattggtttg |
405 |
Q |
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| T |
11155435 |
gtatgcatacaacatgaggaatgctataaatgataaggatattagtttgatgctttcgtcaaaagaaaaggaaaagatcaataatgcacttgatttg |
11155339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 165 - 238
Target Start/End: Complemental strand, 11155555 - 11155482
Alignment:
| Q |
165 |
aagtgacaaggtaaggcggtcaatgaaggaaattgagaggaagatcaacgaagctgagaagtacaaagacgaag |
238 |
Q |
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| T |
11155555 |
aagtgacaagggaaggttgtcaaaggaggatattgagaggaagatcaaagaagctgagaagtacaaagatgaag |
11155482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 309 - 405
Target Start/End: Complemental strand, 11195882 - 11195786
Alignment:
| Q |
309 |
gtatgcatacaagatgaaggatgccattaatgataaggatattagctttatgcttctgtcaaaagaaaagaaaaagatcaatgatgcaattggtttg |
405 |
Q |
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| T |
11195882 |
gtatgcatacaacatgaggaatgcgataaatgataaggacattagtttgatgctttcgtcaaaagaaaaggaaaagatcaataaagcaattgatttg |
11195786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 191 - 238
Target Start/End: Complemental strand, 11195976 - 11195929
Alignment:
| Q |
191 |
aggaaattgagaggaagatcaacgaagctgagaagtacaaagacgaag |
238 |
Q |
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| T |
11195976 |
aggaaattgagaggatgatcaaagaagctgagaagtacaaagatgaag |
11195929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 191 - 238
Target Start/End: Complemental strand, 11275192 - 11275145
Alignment:
| Q |
191 |
aggaaattgagaggaagatcaacgaagctgagaagtacaaagacgaag |
238 |
Q |
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| T |
11275192 |
aggaaattgagaggatgatcaatgaagctgagaagtacaaagatgaag |
11275145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 105
Target Start/End: Complemental strand, 11155680 - 11155609
Alignment:
| Q |
34 |
gaaattcctccagttccagcaggtgttcctaagattcgaatcaacttccaaattgatcatgatggcatatta |
105 |
Q |
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| T |
11155680 |
gaaattcctccggctccggcaggtgttcctcagattaaaatcagcttccaaatcgatgatgatggcatctta |
11155609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 238
Target Start/End: Complemental strand, 11208653 - 11208583
Alignment:
| Q |
168 |
tgacaaggtaaggcggtcaatgaaggaaattgagaggaagatcaacgaagctgagaagtacaaagacgaag |
238 |
Q |
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| T |
11208653 |
tgacaagggaagactgtcaaaggaggaaattgagaggatgatcagtgaagctgagaaatacaaagatgaag |
11208583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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