View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7899_low_8 (Length: 423)
Name: NF7899_low_8
Description: NF7899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7899_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 186 - 405
Target Start/End: Complemental strand, 23522770 - 23522551
Alignment:
| Q |
186 |
tccggagactcagaggactcgtcttcggtggcgccaccaccgaattcgataccgaagaggcggatgcctttctctttgttagtaggaggaggacggatga |
285 |
Q |
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| T |
23522770 |
tccggagactcagaggactcgtcttcggtggcgccaccaccgaattcgataccgaagaggcggatgcctttctctttgttagtaggaggaggacggatga |
23522671 |
T |
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| Q |
286 |
agggaagttgagagaatgactcaacattcattaagtcatgagtttctctttcaatgannnnnnngtccatgaagagaataattttgagagtgaagttgtg |
385 |
Q |
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| T |
23522670 |
agggaagttgagagaatgactcaacattcattaagtcatgagtttctctttcaatgatttttttgtccatgaagagaataattttgagagtgaagttgtg |
23522571 |
T |
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| Q |
386 |
gagagaagaagagagaaagt |
405 |
Q |
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| T |
23522570 |
gagagaagaagagagaaagt |
23522551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 10 - 102
Target Start/End: Complemental strand, 23522949 - 23522857
Alignment:
| Q |
10 |
cgtgttgacgttctcttttgtgtgcgttttgatgaccacctaaggcttgtgaagtaggaaagtttctacaacagtaatgacattcaaatcttc |
102 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23522949 |
cgtgttgacgttctcttttgtgtgcgttttgatgaccacctaaggcttgtgaagtaggaaagtttctacaacagtaatgacattcaaatcttc |
23522857 |
T |
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