View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7900_low_1 (Length: 737)
Name: NF7900_low_1
Description: NF7900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7900_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 662; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 662; E-Value: 0
Query Start/End: Original strand, 13 - 722
Target Start/End: Complemental strand, 9213238 - 9212529
Alignment:
| Q |
13 |
agcagagagacaaaggagagagaaactaaaccatagattttatgctttaagatctgtggttccaaatgtttcaaagatggataaagcttctcttttatca |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9213238 |
agcagagagacaaaggagagagaaactaaaccatagattttacgctttaagatctgtggttccaaatgtttcaaagatggataaagcttctcttttatca |
9213139 |
T |
|
| Q |
113 |
gatgcagtggattacatcaatgagttaaaatcaaagattgaagatttagaatcagtgcaacaaaaggaatcgaaaaaggtgaagatggaaacgatggaaa |
212 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9213138 |
gatgcagtggattacatcaatgagttaaaatcaaagattgaagatttagaatcagtgcaacaaaaggaatcgaaaaaggtgaagatggaaacgatggaaa |
9213039 |
T |
|
| Q |
213 |
ttgtcgataataacagtgcaacgacaacttcaactgtggtagaccaaaaaagaccttgtaatgttaatgcttttgagattgatgtgaagattataggaaa |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
9213038 |
ttgtcgataataacagtgcaacgacaacttcaactgtggtagaccaaaaaagaccttgtaatgttaatgcgtttgagattgatgtgaagattataggaaa |
9212939 |
T |
|
| Q |
313 |
tgatgctatggtgagagtacaaagtgagaatgttaatcaccctggtgcaagattaatgagtgtattgaaggatttagagtttcaggtacatcatgctagt |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |
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| T |
9212938 |
tgatgctatggtgagagtacaaagtgagaatgttaatcaccctggtgcaagattaatgagtgtattgaaggatttggagtttcaggtgcatcatgctagt |
9212839 |
T |
|
| Q |
413 |
atatcgactgttaatgaagttatggttcaagatgttgttgttcgaattcctaatgagatgagcaaggaagagagtctaattagatctgccattctcatga |
512 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||| |
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| T |
9212838 |
atatcgactgttaatgaagttatggttcaagatgttgttgttcgaattcctaatgagatgaacaaggaagagagtttaattagatccgccattctcatga |
9212739 |
T |
|
| Q |
513 |
aattaggtcagtagtgagtagaaactcgtgtcatctcatacaaaccaatggctttgccattcatagtgtcgaagatattcttcgaacacaatttactatc |
612 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||| ||||| |
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| T |
9212738 |
aattaggtcagtagtgagtagaaactcgtgtcatctcatacaaatcaatggctttgccattcattgtgttgaagatattcttcgaacacaatttgctatc |
9212639 |
T |
|
| Q |
613 |
aatgtatgtatataaagttccaacttttgtattatttcttctttctcattgattcccaacatcacacatatccgagttgtattattacttgtgtgcatag |
712 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9212638 |
aatgtatgtatataaagttccaactgttgtattatttcttctttctcattgattcccaacatcacacatatccgagttgtattattacttgtgtgcatag |
9212539 |
T |
|
| Q |
713 |
ccgtctcaac |
722 |
Q |
| |
|
|||||||||| |
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| T |
9212538 |
ccgtctcaac |
9212529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 13 - 517
Target Start/End: Original strand, 9194792 - 9195308
Alignment:
| Q |
13 |
agcagagagacaaaggagagagaaactaaaccatagattttatgctttaagatctgtggttccaaatgtttcaaagatggataaagcttctcttttatca |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||| |
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| T |
9194792 |
agcagagagacaaaggagagagaaactaaaccatagattctatgctttaagatctgtggttccaaacgtttcaaagatggataaagcttctttgttatct |
9194891 |
T |
|
| Q |
113 |
gatgcagtggattacatcaatgagttaaaatcaaagattgaagatttagaatcagtgcaacaaaaggaatcgaaaaaggtgaagatggaaacgatggaaa |
212 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||| ||||||||| ||| || ||||||||||||||||||||||| || |||| |||||||| ||| |
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| T |
9194892 |
gatgcagtagattacatcaatgagttaaaagcaaagatcgaagatttaaaattagggcaacaaaaggaatcgaaaaaggcgatgatgaaaacgatgaaaa |
9194991 |
T |
|
| Q |
213 |
ttgtcgataataacagtgcaacgacaacttcaactgtggtagaccaaaaaagaccttgt---------aatgttaatgcttttgagattgatgtgaagat |
303 |
Q |
| |
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||||||||||||| ||||||||||||||||||| ||||||||||||||| | |||| || ||| ||| |||||| ||||||||||||||||| |
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| T |
9194992 |
ttgtcgataataatagtgcaacgacaacttcaattgtggtagaccaaaacaaacctagttgtagtaagaatcttattgctttagagattgatgtgaagat |
9195091 |
T |
|
| Q |
304 |
tataggaaatgatgctatggtgagagtacaaagtgagaatgttaatcaccctggtgcaagattaatgagtgtattgaaggatttagagtttcaggtacat |
403 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||| ||||| |||| |||||||||| |
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| T |
9195092 |
cataggacatgatgctatggtgagagttcaaagtttgaatgttaatcaccctagtgcaagattaatgagtgtattgaaagatttggagtatcaggtacat |
9195191 |
T |
|
| Q |
404 |
catgctagtatatcgactgttaatgaagtt---atggttcaagatgttgttgttcgaattcctaatgagatgagcaaggaagagagtctaattagatctg |
500 |
Q |
| |
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|| |||||||||||||| |||||| ||||| ||||||||||||||| ||||| | |||||||||||||||| || |||||||| |||||||| |||| |
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| T |
9195192 |
caggctagtatatcgaccgttaataaagttgtaatggttcaagatgttattgttaaagttcctaatgagatgagaaatgaagagagcctaattaggtctg |
9195291 |
T |
|
| Q |
501 |
ccattctcatgaaatta |
517 |
Q |
| |
|
| ||||||||||||||| |
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|
| T |
9195292 |
caattctcatgaaatta |
9195308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 336 - 532
Target Start/End: Complemental strand, 9235313 - 9235117
Alignment:
| Q |
336 |
gtgagaatgttaatcaccctggtgcaagattaatgagtgtattgaaggatttagagtttcaggtacatcatgctagtatatcgactgttaatgaagttat |
435 |
Q |
| |
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|||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
9235313 |
gtgagaatgttaattaccctagtgcaagattaatgagtgtattgaaggatttgaagtttcaggtacaacatgctagtatatcgactgttaatgaagttat |
9235214 |
T |
|
| Q |
436 |
ggttcaagatgttgttgttcgaattcctaatgagatgagcaaggaagagagtctaattagatctgccattctcatgaaattaggtcagtagtgagta |
532 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
9235213 |
ggttcaaggtgttgttgttcgaattcctaatgagatgagcaatgaagagagtctaattagatcagccattctcatgaaattaggtcagttgtgagta |
9235117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 543 - 723
Target Start/End: Complemental strand, 9235054 - 9234870
Alignment:
| Q |
543 |
tcatctcatacaaaccaatggcttt-gccattcatagtgtcgaagatattcttcgaacacaatttactatcaatgtatgtatataaagttccaacttttg |
641 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| ||||| |||||| ||||||||||||| |||||| ||| | |||| ||||||||||||| |
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|
| T |
9235054 |
tcatctcatacaaaccaatggcttttgccattcatagtatcgaaaatattcctcgaacacaatttgttatcaacttatttgtatacggttccaacttttg |
9234955 |
T |
|
| Q |
642 |
tattatttcttctttctcattgattcccaacatcacacatatccgagttgtat---tattacttgtgtgcatagccgtctcaact |
723 |
Q |
| |
|
|||| ||||||||||||| | |||| || ||| ||||||| | | |||||||| ||||||| ||||| |||||||||| |||| |
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|
| T |
9234954 |
tattgtttcttctttctcttcgatttccgacaccacacatgttcaagttgtatttatattactcgtgtgaatagccgtcttaact |
9234870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 99
Target Start/End: Original strand, 28081131 - 28081217
Alignment:
| Q |
13 |
agcagagagacaaaggagagagaaactaaaccatagattttatgctttaagatctgtggttccaaatgtttcaaagatggataaagc |
99 |
Q |
| |
|
||||||||||||||| ||||| || || ||||| | ||| |||||| || | ||||||||||||||||||| |||||||| ||||| |
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|
| T |
28081131 |
agcagagagacaaagaagagaaaagcttaaccaaaaattctatgctctacgtgctgtggttccaaatgtttctaagatggacaaagc |
28081217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 120 - 178
Target Start/End: Original strand, 17370995 - 17371053
Alignment:
| Q |
120 |
tggattacatcaatgagttaaaatcaaagattgaagatttagaatcagtgcaacaaaag |
178 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
17370995 |
tggattacatcaatgagttgaaagcaaagattgaaaatttagaattagtgcaacaaaag |
17371053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 178
Target Start/End: Original strand, 24748745 - 24748802
Alignment:
| Q |
121 |
ggattacatcaatgagttaaaatcaaagattgaagatttagaatcagtgcaacaaaag |
178 |
Q |
| |
|
|||||||||| ||||||| ||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
24748745 |
ggattacatctatgagttgaaagcaaagattgaaaatttagaatcagtgcaacaaaag |
24748802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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